Rmu_co8397811.1_g000001

RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8397811.1
OG0024250
Physical Location & Seq
Forward (+)
1 .. 280
280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8397811.1_g000001.1.cds

Sequence Viewer

Length: 202 bp
gtcacctggatactatgacggccggtactggaccatgtggaagctacccatgttcggatgcaccgactctgcacaagtgttgaaggagctcgaggaggtcaagaaggcacacccagatgctttcgtccgtatcatcggattcgacaacgtccgtcaagttcagtgcatcagtttcatcgcctacaagcctgcaggcttctaa

Protein Analysis

66

Amino Acids

7.62

Weight (kDa)

7.74

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024250)

Species Orthologous Gene IDs
malus_domestica MD13G1041800.v1.1
pyrus_communis pycom13g03620
rosa_multiflora Rmu_co8397811.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 20
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 83
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 2 cut(s) 44, 89
AluI AGCT 2 cut(s) 44, 89
Alw21I GWGCWC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 7
BciVI GTATCC 1 cut(s) 3
BfmI CTRYAG 1 cut(s) 190
BfuI GTATCC 1 cut(s) 3
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 3 cut(s) 48, 107, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 54
BsnI GGCC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 91
BspANI GGCC 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 7
BstC8I GCNNGC 2 cut(s) 190, 194
BstF5I GGATG 1 cut(s) 63
BstMCI CGRYCG 1 cut(s) 23
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 20
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 190, 194
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 26
CviAII CATG 2 cut(s) 35, 50
CviJI RGCY 5 cut(s) 22, 44, 89, 188, 196
CviKI_1 RGCY 5 cut(s) 22, 44, 89, 188, 196
CviQI GTAC 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 20
EagI CGGCCG 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 2 cut(s) 38, 53
FaiI YATR 3 cut(s) 16, 36, 51
FatI CATG 2 cut(s) 34, 49
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 23
Hin1II CATG 2 cut(s) 38, 53
HinfI GANTC 2 cut(s) 66, 139
HpaII CCGG 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 57, 138
Hpy188III TCNNGA 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 77, 98
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 61, 72, 166, 192
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 2 cut(s) 38, 53
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 5 cut(s) 14, 19, 36, 127, 178
LweI GCATC 3 cut(s) 48, 107, 175
MaeII ACGT 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 91
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 2 cut(s) 86, 89
MslI CAYNNNNRTG 1 cut(s) 115
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
NlaIII CATG 2 cut(s) 38, 53
PaeR7I CTCGAG 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 1 cut(s) 139
PflFI GACNNNGTC 1 cut(s) 147
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspPI GGNCC 1 cut(s) 31
PspXI VCTCGAGB 1 cut(s) 90
PstI CTGCAG 1 cut(s) 194
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 115
SacI GAGCTC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 31
SbfI CCTGCAGG 1 cut(s) 194
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 7
SdaI CCTGCAGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 91
SetI ASST 5 cut(s) 8, 46, 91, 100, 151
SfaNI GCATC 3 cut(s) 48, 107, 175
SfcI CTRYAG 1 cut(s) 190
Sfr274I CTCGAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse8387I CCTGCAGG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 5
TaiI ACGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 91, 142
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 2 cut(s) 117, 141
TspRI CASTG 1 cut(s) 168
Tth111I GACNNNGTC 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.