Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415339.1

Orthogroup ID

OG0031686

Physical Location & Seq

Genomic Coordinates Forward (+)

127 .. 644

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atggaatctgaccttcaccaagttataaaggcaaatgatgatctcactcctgagcattatcaatttttcctgtaccagcttcttcgagctctcaagtatatacatacaggaaatgttttccatcgagatttaaagccaaaaaatatacttgctaatgcagactgcaaactgaaaatctgtgactttggtcttgctcgtccagcatttagcgatgccccatctactgtcttttggactgactatgtggcaactcgatggtaccgtgctcccgaactttgtggttcctttttctccaaggtaattatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

102

Amino Acids

11.87

Weight (kDa)

7.74

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031686)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8415339.1_g000001 Rmu_co8492419.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	74, 260
AluBI	AGCT	2 cut(s)	79, 89
AluI	AGCT	2 cut(s)	79, 89
Alw21I	GWGCWC	2 cut(s)	91, 268
Asp718I	GGTACC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	2 cut(s)	91, 268
BccI	CCATC	3 cut(s)	129, 226, 249
BmiI	GGNNCC	2 cut(s)	260, 283
BmsI	GCATC	1 cut(s)	202
BoxI	GACNNNNGTC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	258
BsiHKAI	GWGCWC	2 cut(s)	91, 268
Bsp1286I	GDGCHC	2 cut(s)	91, 268
Bsp143I	GATC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	260, 283
BspT107I	GGYRCC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	226, 263
BstDEI	CTNAG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstPAI	GACNNNNGTC	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	73, 259
CviJI	RGCY	3 cut(s)	79, 89, 136
CviKI_1	RGCY	3 cut(s)	79, 89, 136
CviQI	GTAC	2 cut(s)	73, 259
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DraI	TTTAAA	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	294
FaiI	YATR	7 cut(s)	26, 99, 101, 105, 146, 243, 305
FriOI	GRGCYC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	50, 125, 269
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	226, 263
HpyCH4V	TGCA	2 cut(s)	158, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	51
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	63, 83, 89, 93, 213
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	91, 268
MluCI	AATT	2 cut(s)	62, 300
MseI	TTAA	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	40
NlaIV	GGNNCC	2 cut(s)	260, 283
NmuCI	GTSAC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	5
PshAI	GACNNNNGTC	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	260, 283
RsaI	GTAC	2 cut(s)	74, 260
RsaNI	GTAC	2 cut(s)	73, 259
SacI	GAGCTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	91, 268
SetI	ASST	4 cut(s)	15, 81, 91, 300
SfaNI	GCATC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	62, 300
SstI	GAGCTC	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	226, 263
TaqI	TCGA	3 cut(s)	85, 124, 253
TasI	AATT	2 cut(s)	62, 300
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.