Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8492419.1

Orthogroup ID

OG0031686

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2217

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8492419.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ggtgttatatgcgcctattggattgttgctttgaaagtttttggatgctttgttactgagatgcagcctgatcaaagaaaaaagtctgtggatgtggacttcttcactgaatatggtgaggggagtaggtataaaatagaggaagtaattggtaaaggaagctatggagttgtttgttctgcgtttgatacgcatactggagaaaaggttattaaagcaaatgatgatttgacaccagaacattatcagttctttctttatcagcttctccgaggaatgaagtacatacacacagcaaatgtttttcaccgagatctaaaacccaaaaacatcttggcaaatgccgactgcaaactgaagatctgcgactttggtctcgctagagtagctttcaatgatactcccacagctatattttggacggactatgttgccacaagatggtacagggctcctgagttgtgtggatcatttttctcaaaggtgcaagaatcattatccctttcactttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

171

Amino Acids

19.51

Weight (kDa)

7.05

Isoelectric Point (pI)

16.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031686)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8415339.1_g000001 Rmu_co8492419.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	441
AclWI	GGATC	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	284, 446
AfiI	CCNNNNNNNGG	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	34, 394
AluBI	AGCT	4 cut(s)	162, 265, 389, 410
AluI	AGCT	4 cut(s)	162, 265, 389, 410
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	128, 299
BanII	GRGCYC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	381
BglII	AGATCT	2 cut(s)	313, 360
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	453
BmsI	GCATC	2 cut(s)	35, 51
BoxI	GACNNNNGTC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	50, 97
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	48, 447
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	70, 313, 360, 467
BspCNI	CTCAG	2 cut(s)	49, 448
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	4 cut(s)	70, 313, 360, 467
BstDEI	CTNAG	2 cut(s)	57, 456
BstF5I	GGATG	2 cut(s)	50, 97
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	4 cut(s)	73, 316, 363, 470
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	4 cut(s)	70, 313, 360, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstPAI	GACNNNNGTC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	2 cut(s)	313, 360
BstYI	RGATCY	2 cut(s)	313, 360
BtsCI	GGATG	2 cut(s)	50, 97
BtsIMutI	CAGTG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	283, 445
CviJI	RGCY	6 cut(s)	67, 162, 265, 389, 410, 452
CviKI_1	RGCY	6 cut(s)	67, 162, 265, 389, 410, 452
CviQI	GTAC	2 cut(s)	283, 445
DdeI	CTNAG	2 cut(s)	57, 456
DpnI	GATC	4 cut(s)	72, 315, 362, 469
DpnII	GATC	4 cut(s)	70, 313, 360, 467
Eco24I	GRGCYC	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	454
FaiI	YATR	9 cut(s)	8, 10, 114, 132, 165, 195, 287, 413, 429
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	2 cut(s)	57, 104
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	219
HhaI	GCGC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	491
HphI	GGTGA	2 cut(s)	128, 299
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	64, 351, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	2 cut(s)	57, 456
HspAI	GCGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	70, 313, 360, 467
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	5 cut(s)	81, 183, 249, 433, 468
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	35, 51
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	4 cut(s)	72, 315, 362, 469
MboI	GATC	4 cut(s)	70, 313, 360, 467
MboII	GAAGA	2 cut(s)	94, 370
MflI	RGATCY	2 cut(s)	313, 360
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	3 cut(s)	112, 133, 266
MseI	TTAA	2 cut(s)	213, 514
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	4 cut(s)	70, 313, 360, 467
NlaIV	GGNNCC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	491
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	66
PshAI	GACNNNNGTC	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	453
PsuI	RGATCY	2 cut(s)	313, 360
RsaI	GTAC	2 cut(s)	284, 446
RsaNI	GTAC	2 cut(s)	283, 445
SaqAI	TTAA	2 cut(s)	213, 514
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	4 cut(s)	70, 313, 360, 467
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	7 cut(s)	131, 164, 210, 267, 391, 412, 486
SfaNI	GCATC	2 cut(s)	35, 51
Sse9I	AATT	1 cut(s)	147
SspMI	CTAG	1 cut(s)	381
TasI	AATT	1 cut(s)	147
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	213, 514
Tru9I	TTAA	2 cut(s)	213, 514
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	293
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.