Rmu_co8416923.1_g000001

membrane protein At1g75140-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8416923.1
OG0015151
Physical Location & Seq
Reverse (-)
159 .. 1358
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8416923.1_g000001.1.cds

Sequence Viewer

Length: 1200 bp
atgatggagagtgtgagcaagtttgataccggggaagacgggctgccggttactattttggaggtgcatcatgttgggaggatgagttacatactggccagtgatgtgagtgggaagattacggtttataaagagaatgggacagttcatggttccactatgccgtctagcaggccgcttgctttcttgaagcagcggcttctgtttttgacggagacgggtgcagggtcattggacttgaggaccatgaagattagggagtctgaatgtgaagggttgaatcactcgctgtctcggtactatgtttttgatgccatggagcggtctaaagcttacgggtttacatcagaaggtgacctgattcatgtgctgttgttgggggatgtgatgaacttcaagtgcagagttagatccaagaagaagtttgaaatggatgagcctcttgctttccaggcgataaaggggtgtttgcttattgttagcggggagaaggttttcgtgtataatgtgtcatcccaacattatgttagggtgggtgctcctcgaatgatgttctctgctggtctcgatgagattagatcgtcttttctaaattatcagaccatggatgctgatgcagagaaaagaaatgagataccgttaattgctagtgatcgcgaaaagcttgttgttcttggtcttggcggagggtatgtaggaatgtatcgcttgaaccttcctgcatctaaaggtgaatttagtacgatgctatggactagccctgtattcttctttgtacttttcctatttggagcttggcaatttttcgctaagaagaaagaagcactcacttcatggggacccgatgatccatttagttcgacttcagctacaacaggggctccattgggtggaaatagcactggagaaaggtcttttgtggactcttcatcaagaaatgctgatatgatggatattagaggtggtggtctcagaggtccatcaaggaggtacgtctctcctccacggtatgcaggtggagctacaagttcatttaggccaggtacgaacgatcataacccgagaccatcatctgttgatcctaattttcgaacagcttcagagctgaaattcagagggtctgcgttagaatcttcgggattcccaaaacggagggaaagtttgtttgtgaacaaccaagttatggatgatagcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

44.15

Weight (kDa)

8.79

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75140
fragaria_vesca FvH4_2g39960
malus_domestica MD08G1033400.v1.1 MD15G1030000.v1.1
prunus_persica Prupe.1G381500_v2.0.a1
pyrus_communis pycom08g02660 pycom15g02640
rosa_chinensis RchiOBHm_Chr6g0300791
rosa_laevigata RLG00000011301
rosa_multiflora Rmu_co8416923.1_g000001
rosa_roxburghii Rroxscaffold_7G00167410
rosa_rugosa Rorug06G0299200
rosa_samantha Rh6AG412100 Rh6BG419300 Rh6CG426800 Rh6DG412100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AarI CACCTGC 1 cut(s) 1004
Acc36I ACCTGC 1 cut(s) 1004
AccB7I CCANNNNNTGG 2 cut(s) 890, 1183
AccBSI CCGCTC 1 cut(s) 322
AccII CGCG 1 cut(s) 657
AciI CCGC 5 cut(s) 176, 196, 322, 483, 684
AclWI GGATC 3 cut(s) 405, 842, 1073
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 734, 1109
AcuI CTGAAG 2 cut(s) 849, 1083
AfaI GTAC 5 cut(s) 299, 742, 777, 992, 1045
AfiI CCNNNNNNNGG 3 cut(s) 321, 890, 1183
AgsI TTSAA 5 cut(s) 190, 280, 397, 428, 712
AjnI CCWGG 2 cut(s) 450, 1039
AluBI AGCT 7 cut(s) 332, 664, 794, 869, 1022, 1097, 1105
AluI AGCT 7 cut(s) 332, 664, 794, 869, 1022, 1097, 1105
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 6 cut(s) 209, 297, 569, 974, 1000, 1057
AlwI GGATC 3 cut(s) 405, 842, 1073
Ama87I CYCGRG 1 cut(s) 1060
AoxI GGCC 3 cut(s) 96, 173, 1037
ApeKI GCWGC 2 cut(s) 43, 193
ApoI RAATTY 2 cut(s) 734, 1109
Asp700I GAANNNNTTC 2 cut(s) 494, 1096
AspS9I GGNCC 3 cut(s) 243, 839, 977
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 365, 743
AsuII TTCGAA 1 cut(s) 1090
AvaI CYCGRG 1 cut(s) 1060
AvaII GGWCC 3 cut(s) 243, 839, 977
BalI TGGCCA 1 cut(s) 98
BanII GRGCYC 1 cut(s) 883
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 2 cut(s) 30, 205
BccI CCATC 3 cut(s) 943, 988, 1075
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 452, 1041
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 6 cut(s) 209, 297, 569, 974, 1000, 1057
BfaI CTAG 3 cut(s) 168, 648, 756
BfuAI ACCTGC 1 cut(s) 1004
BisI GCNGC 4 cut(s) 44, 176, 194, 197
BlsI GCNGC 4 cut(s) 45, 177, 195, 198
Bme1390I CCNGG 3 cut(s) 31, 452, 1041
Bme18I GGWCC 3 cut(s) 243, 839, 977
BmeT110I CYCGRG 1 cut(s) 1060
BmgT120I GGNCC 3 cut(s) 243, 839, 977
BmiI GGNNCC 4 cut(s) 154, 840, 841, 882
BmrFI CCNGG 3 cut(s) 31, 452, 1041
BmsI GCATC 6 cut(s) 76, 301, 598, 604, 731, 735
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 924
Bpu14I TTCGAA 1 cut(s) 1090
BpuEI CTTGAG 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 31
BsaI GGTCTC 3 cut(s) 569, 974, 1057
BsaJI CCNNGG 4 cut(s) 30, 315, 603, 1004
BsaXI ACNNNNNCTCC 8 cut(s) 70, 100, 678, 708, 865, 895, 1144, 1174
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 890, 1183
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 99, 99, 907
BseBI CCWGG 2 cut(s) 452, 1041
BseDI CCNNGG 4 cut(s) 30, 315, 603, 1004
BseGI GGATG 6 cut(s) 87, 388, 439, 512, 613, 1192
BseLI CCNNNNNNNGG 3 cut(s) 321, 890, 1183
BseMII CTCAG 1 cut(s) 985
BseNI ACTGG 3 cut(s) 99, 99, 907
BseRI GAGGAG 2 cut(s) 531, 990
BseXI GCAGC 2 cut(s) 30, 205
BsgI GTGCAG 2 cut(s) 243, 421
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 3 cut(s) 98, 175, 1039
BsiHKAI GWGCWC 1 cut(s) 541
BsiHKCI CYCGRG 1 cut(s) 1060
BsiSI CCGG 2 cut(s) 30, 47
BslFI GGGAC 2 cut(s) 154, 852
BslI CCNNNNNNNGG 3 cut(s) 321, 890, 1183
BsmAI GTCTC 6 cut(s) 209, 297, 569, 974, 1000, 1057
BsmBI CGTCTC 2 cut(s) 209, 1000
BsmFI GGGAC 2 cut(s) 154, 852
BsnI GGCC 3 cut(s) 98, 175, 1039
Bso31I GGTCTC 3 cut(s) 569, 974, 1057
BsoBI CYCGRG 1 cut(s) 1060
Bsp119I TTCGAA 1 cut(s) 1090
Bsp1286I GDGCHC 2 cut(s) 541, 883
Bsp143I GATC 6 cut(s) 410, 578, 652, 847, 1051, 1078
Bsp19I CCATGG 2 cut(s) 315, 603
Bsp68I TCGCGA 1 cut(s) 657
BspACI CCGC 5 cut(s) 176, 196, 322, 483, 684
BspANI GGCC 3 cut(s) 98, 175, 1039
BspCNI CTCAG 1 cut(s) 984
BspFNI CGCG 1 cut(s) 657
BspLI GGNNCC 4 cut(s) 154, 840, 841, 882
BspMI ACCTGC 1 cut(s) 1004
BspPI GGATC 3 cut(s) 405, 842, 1073
BspT104I TTCGAA 1 cut(s) 1090
BspTNI GGTCTC 3 cut(s) 569, 974, 1057
BsrBI CCGCTC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 3 cut(s) 99, 99, 907
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 4 cut(s) 30, 315, 603, 1004
BssMI GATC 6 cut(s) 410, 578, 652, 847, 1051, 1078
BssT1I CCWWGG 2 cut(s) 315, 603
Bst2UI CCWGG 2 cut(s) 452, 1041
Bst4CI ACNGT 4 cut(s) 124, 145, 639, 1008
Bst6I CTCTTC 1 cut(s) 931
BstBI TTCGAA 1 cut(s) 1090
BstC8I GCNNGC 2 cut(s) 173, 180
BstDEI CTNAG 2 cut(s) 810, 971
BstDSI CCRYGG 3 cut(s) 315, 603, 1004
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 6 cut(s) 87, 388, 439, 512, 613, 1192
BstFNI CGCG 1 cut(s) 657
BstKTI GATC 6 cut(s) 413, 581, 655, 850, 1054, 1081
BstMAI GTCTC 6 cut(s) 209, 297, 569, 974, 1000, 1057
BstMBI GATC 6 cut(s) 410, 578, 652, 847, 1051, 1078
BstMWI GCNNNNNNNGC 2 cut(s) 452, 1019
BstNI CCWGG 2 cut(s) 452, 1041
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 3 cut(s) 29, 450, 1039
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 30, 205
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuRI GGCC 3 cut(s) 98, 175, 1039
BtgI CCRYGG 3 cut(s) 315, 603, 1004
BtsCI GGATG 6 cut(s) 87, 388, 439, 512, 613, 1192
BtsIMutI CAGTG 2 cut(s) 106, 900
BtuMI TCGCGA 1 cut(s) 657
BveI ACCTGC 1 cut(s) 1004
Cac8I GCNNGC 2 cut(s) 173, 180
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 3 cut(s) 243, 839, 977
Csp6I GTAC 5 cut(s) 298, 741, 776, 991, 1044
CviAII CATG 7 cut(s) 71, 149, 247, 316, 365, 604, 834
CviQI GTAC 5 cut(s) 298, 741, 776, 991, 1044
DdeI CTNAG 2 cut(s) 810, 971
DpnI GATC 6 cut(s) 412, 580, 654, 849, 1053, 1080
DpnII GATC 6 cut(s) 410, 578, 652, 847, 1051, 1078
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 931
EarI CTCTTC 1 cut(s) 931
EciI GGCGGA 1 cut(s) 699
Eco130I CCWWGG 2 cut(s) 315, 603
Eco24I GRGCYC 1 cut(s) 883
Eco31I GGTCTC 3 cut(s) 569, 974, 1057
Eco47I GGWCC 3 cut(s) 243, 839, 977
Eco57I CTGAAG 2 cut(s) 849, 1083
Eco88I CYCGRG 1 cut(s) 1060
Eco91I GGTNACC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 839
EcoO65I GGTNACC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 450, 1039
EcoT14I CCWWGG 2 cut(s) 315, 603
EcoT38I GRGCYC 1 cut(s) 883
ErhI CCWWGG 2 cut(s) 315, 603
Esp3I CGTCTC 2 cut(s) 209, 1000
FaeI CATG 7 cut(s) 74, 152, 250, 319, 368, 607, 837
FaqI GGGAC 2 cut(s) 154, 852
FatI CATG 7 cut(s) 70, 148, 246, 315, 364, 603, 833
FauI CCCGC 1 cut(s) 476
Fnu4HI GCNGC 4 cut(s) 44, 176, 194, 197
FokI GGATG 5 cut(s) 94, 395, 446, 499, 620
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 4 cut(s) 44, 176, 194, 197
FspBI CTAG 3 cut(s) 168, 648, 756
GluI GCNGC 4 cut(s) 44, 176, 194, 197
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 3 cut(s) 98, 175, 1039
HapII CCGG 2 cut(s) 30, 47
Hin1II CATG 7 cut(s) 74, 152, 250, 319, 368, 607, 837
HindIII AAGCTT 2 cut(s) 330, 662
HinfI GANTC 6 cut(s) 260, 280, 361, 923, 1130, 1140
HpaII CCGG 2 cut(s) 30, 47
HphI GGTGA 2 cut(s) 365, 743
Hpy166II GTNNAC 3 cut(s) 342, 922, 1171
Hpy188I TCNGA 6 cut(s) 265, 349, 600, 974, 1102, 1115
Hpy188III TCNNGA 5 cut(s) 187, 566, 656, 933, 1137
Hpy8I GTNNAC 3 cut(s) 342, 922, 1171
HpyAV CCTTC 4 cut(s) 266, 344, 484, 725
HpyCH4III ACNGT 4 cut(s) 124, 145, 639, 1008
HpyCH4IV ACGT 1 cut(s) 993
HpyCH4V TGCA 6 cut(s) 67, 224, 402, 617, 722, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 1019
HpyF3I CTNAG 2 cut(s) 810, 971
HpySE526I ACGT 1 cut(s) 993
Hsp92II CATG 7 cut(s) 74, 152, 250, 319, 368, 607, 837
KflI GGGWCCC 1 cut(s) 839
Kzo9I GATC 6 cut(s) 410, 578, 652, 847, 1051, 1078
LmnI GCTCC 5 cut(s) 319, 544, 791, 886, 1019
Lsp1109I GCAGC 2 cut(s) 30, 205
LweI GCATC 6 cut(s) 76, 301, 598, 604, 731, 735
MaeI CTAG 3 cut(s) 168, 648, 756
MaeII ACGT 1 cut(s) 993
MaeIII GTNAC 3 cut(s) 49, 86, 353
MalI GATC 6 cut(s) 412, 580, 654, 849, 1053, 1080
MbiI CCGCTC 1 cut(s) 322
MboI GATC 6 cut(s) 410, 578, 652, 847, 1051, 1078
MboII GAAGA 8 cut(s) 47, 127, 262, 430, 760, 826, 918, 1125
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 2 cut(s) 541, 883
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 6 cut(s) 592, 642, 734, 800, 1084, 1109
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 2 cut(s) 269, 917
Mox20I TGGCCA 1 cut(s) 98
MroXI GAANNNNTTC 2 cut(s) 494, 1096
MscI TGGCCA 1 cut(s) 98
MseI TTAA 1 cut(s) 641
Msp20I TGGCCA 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 2 cut(s) 30, 47
MspR9I CCNGG 3 cut(s) 31, 452, 1041
MvaI CCWGG 2 cut(s) 452, 1041
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 2 cut(s) 452, 1019
NciI CCSGG 1 cut(s) 31
NcoI CCATGG 2 cut(s) 315, 603
NdeII GATC 6 cut(s) 410, 578, 652, 847, 1051, 1078
NlaIII CATG 7 cut(s) 74, 152, 250, 319, 368, 607, 837
NlaIV GGNNCC 4 cut(s) 154, 840, 841, 882
NmuCI GTSAC 1 cut(s) 353
NruI TCGCGA 1 cut(s) 657
NspV TTCGAA 1 cut(s) 1090
PaqCI CACCTGC 1 cut(s) 1004
PdmI GAANNNNTTC 2 cut(s) 494, 1096
PfeI GAWTC 4 cut(s) 280, 361, 1130, 1140
PflMI CCANNNNNTGG 2 cut(s) 890, 1183
PkrI GCNGC 4 cut(s) 45, 177, 195, 198
PleI GAGTC 2 cut(s) 268, 917
PpsI GAGTC 2 cut(s) 268, 917
PpuMI RGGWCCY 1 cut(s) 839
PsiI TTATAA 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 2 cut(s) 450, 1039
PspEI GGTNACC 1 cut(s) 353
PspGI CCWGG 2 cut(s) 450, 1039
PspN4I GGNNCC 4 cut(s) 154, 840, 841, 882
PspPI GGNCC 3 cut(s) 243, 839, 977
PspPPI RGGWCCY 1 cut(s) 839
PsuI RGATCY 1 cut(s) 410
RruI TCGCGA 1 cut(s) 657
RsaI GTAC 5 cut(s) 299, 742, 777, 992, 1045
RsaNI GTAC 5 cut(s) 298, 741, 776, 991, 1044
SaqAI TTAA 1 cut(s) 641
SatI GCNGC 4 cut(s) 44, 176, 194, 197
Sau3AI GATC 6 cut(s) 410, 578, 652, 847, 1051, 1078
Sau96I GGNCC 3 cut(s) 243, 839, 977
SchI GAGTC 2 cut(s) 269, 917
ScrFI CCNGG 3 cut(s) 31, 452, 1041
SduI GDGCHC 2 cut(s) 541, 883
SfaNI GCATC 6 cut(s) 76, 301, 598, 604, 731, 735
SfuI TTCGAA 1 cut(s) 1090
SinI GGWCC 3 cut(s) 243, 839, 977
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 6 cut(s) 592, 642, 734, 800, 1084, 1109
SsiI CCGC 5 cut(s) 176, 196, 322, 483, 684
SspMI CTAG 3 cut(s) 168, 648, 756
StyD4I CCNGG 3 cut(s) 29, 450, 1039
StyI CCWWGG 2 cut(s) 315, 603
TaaI ACNGT 4 cut(s) 124, 145, 639, 1008
TaiI ACGT 1 cut(s) 996
TaqI TCGA 4 cut(s) 544, 567, 860, 1090
TasI AATT 6 cut(s) 592, 642, 734, 800, 1084, 1109
TatI WGTACW 1 cut(s) 775
TauI GCSGC 2 cut(s) 178, 199
TfiI GAWTC 4 cut(s) 280, 361, 1130, 1140
Tru1I TTAA 1 cut(s) 641
Tru9I TTAA 1 cut(s) 641
TscAI CASTG 2 cut(s) 106, 907
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 2 cut(s) 43, 193
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 7 cut(s) 137, 263, 353, 404, 822, 918, 1020
TspGWI ACGGA 2 cut(s) 227, 1165
TspRI CASTG 2 cut(s) 106, 907
Van91I CCANNNNNTGG 2 cut(s) 890, 1183
VpaK11BI GGWCC 3 cut(s) 243, 839, 977
XapI RAATTY 2 cut(s) 734, 1109
XmnI GAANNNNTTC 2 cut(s) 494, 1096
XspI CTAG 3 cut(s) 168, 648, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.