Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

45166870 .. 45168554

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0299200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCGAATAAAGAAAATAGCAGTAAGATGAAGGGCCTCTTAAAAGGCCTGAGATACATTTCTCAAATATTTGATGATGACAAAGAACAAGAAATTCAGATTGGGTTTCCTACAGATGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCATCAACGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTAAGTCAGAATGGAGAGATGACCGACAAAAATATGGTCAAATGCGTCTCTGAAGATTCAAGCCGGAGAAGTTCAAGGAGTTCAATGTCTCCGACACATGACCCTGAATTGCCCAAGTCATCGAGAAGGCAATCATTACGGGGGCATGAAGGAGGTGGTGGTGGAACTGAATCCCCAAGGGAAAAATCAGATAAACCAAGGCAAACAAGAAGGCCTTCCAGGAGGGACTCATCGGAGGGTAATAGAGGCGGCCGTCAGGAAGCCACAGATACAAGTAGCGAATCCTCCCTACCGGATATCCCCAAGAAATCACGGCGGAAGAAATCAAAAGAATCGGCGATTGGGGGGTCCAAAAAAAAAAAAGATCCTGGCACCCCATCTACAGCAAAGTCCAATAGCATTGAGCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAGGGGTTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

217

Amino Acids

23.79

Weight (kDa)

9.56

Isoelectric Point (pI)

84.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AciI	CCGC	2 cut(s)	450, 517
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	93, 616
AcuI	CTGAAG	1 cut(s)	273
AgsI	TTSAA	5 cut(s)	173, 261, 276, 285, 626
AjnI	CCWGG	3 cut(s)	181, 419, 568
AjuI	GAANNNNNNNTTGG	4 cut(s)	84, 116, 525, 557
AluBI	AGCT	1 cut(s)	607
AluI	AGCT	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	253, 294
AlwI	GGATC	1 cut(s)	560
AoxI	GGCC	4 cut(s)	34, 46, 413, 451
ApoI	RAATTY	2 cut(s)	93, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	3 cut(s)	34, 149, 549
AvaII	GGWCC	2 cut(s)	149, 549
BanI	GGYRCC	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	642
BccI	CCATC	3 cut(s)	140, 160, 586
BceAI	ACGGC	2 cut(s)	438, 530
BciT130I	CCWGG	3 cut(s)	183, 421, 570
BcoDI	GTCTC	2 cut(s)	253, 294
BfmI	CTRYAG	2 cut(s)	111, 582
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	3 cut(s)	183, 421, 570
Bme18I	GGWCC	2 cut(s)	149, 549
BmgT120I	GGNCC	3 cut(s)	34, 149, 549
BmiI	GGNNCC	2 cut(s)	550, 574
BmrFI	CCNGG	3 cut(s)	183, 421, 570
BmsI	GCATC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	642
BsaBI	GATNNNNATC	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	377, 398
BsaWI	WCCGGW	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	190
BseBI	CCWGG	3 cut(s)	183, 421, 570
BseDI	CCNNGG	2 cut(s)	377, 398
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	41, 626
BseX3I	CGGCCG	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	4 cut(s)	36, 48, 415, 453
BshNI	GGYRCC	1 cut(s)	572
BsiEI	CGRYCG	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	265, 494
BslFI	GGGAC	1 cut(s)	440
BsmAI	GTCTC	2 cut(s)	253, 294
BsmBI	CGTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	4 cut(s)	36, 48, 415, 453
Bsp143I	GATC	1 cut(s)	565
BspACI	CCGC	2 cut(s)	450, 517
BspANI	GGCC	4 cut(s)	36, 48, 415, 453
BspCNI	CTCAG	2 cut(s)	42, 625
BspLI	GGNNCC	2 cut(s)	550, 574
BspPI	GGATC	1 cut(s)	560
BspT107I	GGYRCC	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	377, 398
BssMI	GATC	1 cut(s)	565
BssT1I	CCWWGG	2 cut(s)	377, 398
Bst2UI	CCWGG	3 cut(s)	183, 421, 570
BstDEI	CTNAG	2 cut(s)	50, 612
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	2 cut(s)	253, 294
BstMBI	GATC	1 cut(s)	565
BstMCI	CGRYCG	1 cut(s)	454
BstNI	CCWGG	3 cut(s)	183, 421, 570
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	181, 419, 568
BstSFI	CTRYAG	2 cut(s)	111, 582
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BstZI	CGGCCG	1 cut(s)	451
BsuRI	GGCC	4 cut(s)	36, 48, 415, 453
BtsCI	GGATG	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	34, 149, 549
CseI	GACGC	1 cut(s)	235
CviAII	CATG	4 cut(s)	125, 299, 347, 651
CviJI	RGCY	9 cut(s)	36, 48, 131, 141, 264, 415, 453, 464, 607
CviKI_1	RGCY	9 cut(s)	36, 48, 131, 141, 264, 415, 453, 464, 607
DdeI	CTNAG	2 cut(s)	50, 612
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	451
EagI	CGGCCG	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	532
EclXI	CGGCCG	1 cut(s)	451
Eco130I	CCWWGG	2 cut(s)	377, 398
Eco147I	AGGCCT	2 cut(s)	48, 415
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	149, 549
Eco52I	CGGCCG	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	616
EcoRII	CCWGG	3 cut(s)	181, 419, 568
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	377, 398
ErhI	CCWWGG	2 cut(s)	377, 398
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	4 cut(s)	128, 302, 350, 654
FaiI	YATR	7 cut(s)	126, 135, 137, 236, 300, 348, 652
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 400, 432
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	4 cut(s)	124, 298, 346, 650
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	451
GluI	GCNGC	1 cut(s)	451
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	36, 48, 415, 453
HapII	CCGG	2 cut(s)	265, 494
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	4 cut(s)	128, 302, 350, 654
HinfI	GANTC	5 cut(s)	257, 371, 428, 482, 533
HpaII	CCGG	2 cut(s)	265, 494
Hpy166II	GTNNAC	1 cut(s)	648
Hpy188I	TCNGA	7 cut(s)	99, 210, 253, 294, 391, 436, 615
Hpy188III	TCNNGA	3 cut(s)	324, 458, 626
Hpy8I	GTNNAC	1 cut(s)	648
HpyAV	CCTTC	5 cut(s)	25, 321, 344, 405, 426
HpyCH4V	TGCA	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	50, 612
Hsp92II	CATG	4 cut(s)	128, 302, 350, 654
Kzo9I	GATC	1 cut(s)	565
LweI	GCATC	1 cut(s)	200
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	3 cut(s)	266, 532, 647
MflI	RGATCY	1 cut(s)	565
MluCI	AATT	3 cut(s)	93, 308, 616
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	47, 347, 417, 430, 440, 496, 622
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	2 cut(s)	41, 203
MspI	CCGG	2 cut(s)	265, 494
MspR9I	CCNGG	3 cut(s)	183, 421, 570
MvaI	CCWGG	3 cut(s)	183, 421, 570
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	4 cut(s)	128, 302, 350, 654
NlaIV	GGNNCC	2 cut(s)	550, 574
NspI	RCATGY	1 cut(s)	128
PceI	AGGCCT	2 cut(s)	48, 415
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	4 cut(s)	257, 371, 482, 533
PfoI	TCCNGGA	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Psp6I	CCWGG	3 cut(s)	181, 419, 568
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	3 cut(s)	181, 419, 568
PspN4I	GGNNCC	2 cut(s)	550, 574
PspPI	GGNCC	3 cut(s)	34, 149, 549
PsuI	RGATCY	1 cut(s)	565
SaqAI	TTAA	2 cut(s)	41, 203
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	3 cut(s)	34, 149, 549
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	3 cut(s)	183, 421, 570
SetI	ASST	3 cut(s)	202, 358, 609
SfaNI	GCATC	1 cut(s)	200
SfcI	CTRYAG	2 cut(s)	111, 582
SinI	GGWCC	2 cut(s)	149, 549
Sse9I	AATT	3 cut(s)	93, 308, 616
SseBI	AGGCCT	2 cut(s)	48, 415
SsiI	CCGC	2 cut(s)	450, 517
SspI	AATATT	1 cut(s)	69
StuI	AGGCCT	2 cut(s)	48, 415
StyD4I	CCNGG	3 cut(s)	181, 419, 568
StyI	CCWWGG	2 cut(s)	377, 398
TaqI	TCGA	2 cut(s)	5, 323
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	93, 308, 616
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	4 cut(s)	257, 371, 482, 533
Tru1I	TTAA	2 cut(s)	41, 203
Tru9I	TTAA	2 cut(s)	41, 203
TspDTI	ATGAA	3 cut(s)	44, 176, 363
VpaK11BI	GGWCC	2 cut(s)	149, 549
XapI	RAATTY	2 cut(s)	93, 616
XceI	RCATGY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.