Structural maintenance of chromosomes protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SMC_N | PF02463 | 26 - 699 | 3.9e-29 | RecF/RecN/SMC N terminal domain |
| AAA_15 | PF13175 | 27 - 414 | 5.5e-08 | AAA ATPase domain |
| AAA_29 | PF13555 | 29 - 86 | 7.9e-06 | P-loop containing region of AAA domain |
| AAA_23 | PF13476 | 30 - 292 | 1.4e-10 | AAA domain |
| AAA_21 | PF13304 | 51 - 75 | 8.6e-06 | AAA domain, putative AbiEii toxin, Type IV TA system |
| SMC_hinge | PF06470 | 556 - 672 | 2.1e-20 | SMC proteins Flexible Hinge Domain |
| SMC_N | PF02463 | 813 - 1227 | 7.8e-34 | RecF/RecN/SMC N terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 590 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 292, 2114 |
| AccBSI | CCGCTC | 1 cut(s) | 47 |
| AccI | GTMKAC | 3 cut(s) | 483, 933, 2910 |
| AccII | CGCG | 3 cut(s) | 129, 1488, 2112 |
| AccIII | TCCGGA | 1 cut(s) | 1803 |
| AclWI | GGATC | 8 cut(s) | 555, 568, 886, 1138, 3198, 3362, 3375, 3692 |
| AcoI | YGGCCR | 2 cut(s) | 27, 2626 |
| AcsI | RAATTY | 9 cut(s) | 350, 995, 1215, 1225, 1499, 2323, 2707, 2994, 3048 |
| AcuI | CTGAAG | 7 cut(s) | 471, 497, 935, 1061, 1607, 2498, 3399 |
| AdeI | CACNNNGTG | 1 cut(s) | 2114 |
| AfaI | GTAC | 1 cut(s) | 1339 |
| AfeI | AGCGCT | 1 cut(s) | 3096 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 292, 1666, 2114, 3076, 3088 |
| AflII | CTTAAG | 1 cut(s) | 1022 |
| AflIII | ACRYGT | 1 cut(s) | 127 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 19, 2566 |
| AjnI | CCWGG | 5 cut(s) | 364, 894, 1998, 2361, 3700 |
| AleI | CACNNNNGTG | 1 cut(s) | 2147 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 297, 329, 3584, 3616 |
| Alw21I | GWGCWC | 3 cut(s) | 1314, 2065, 3464 |
| Alw26I | GTCTC | 5 cut(s) | 2472, 2615, 3169, 3394, 3559 |
| Alw44I | GTGCAC | 1 cut(s) | 2061 |
| AlwI | GGATC | 8 cut(s) | 555, 568, 886, 1138, 3198, 3362, 3375, 3692 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 292, 2476, 2782 |
| Ama87I | CYCGRG | 1 cut(s) | 590 |
| Aor13HI | TCCGGA | 1 cut(s) | 1803 |
| Aor51HI | AGCGCT | 1 cut(s) | 3096 |
| AoxI | GGCC | 4 cut(s) | 27, 2487, 2626, 3079 |
| ApaLI | GTGCAC | 1 cut(s) | 2061 |
| ApoI | RAATTY | 9 cut(s) | 350, 995, 1215, 1225, 1499, 2323, 2707, 2994, 3048 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 360, 576, 1164, 1899, 2994, 3024 |
| AspLEI | GCGC | 4 cut(s) | 1488, 1783, 2220, 3097 |
| AspS9I | GGNCC | 4 cut(s) | 134, 167, 3079, 3585 |
| AsuC2I | CCSGG | 1 cut(s) | 1668 |
| AsuHPI | GGTGA | 4 cut(s) | 275, 530, 2537, 3458 |
| AvaI | CYCGRG | 1 cut(s) | 590 |
| AvaII | GGWCC | 3 cut(s) | 134, 167, 3585 |
| BaeGI | GKGCMC | 2 cut(s) | 2065, 2129 |
| BalI | TGGCCA | 1 cut(s) | 2628 |
| BamHI | GGATCC | 2 cut(s) | 560, 3367 |
| BanII | GRGCYC | 2 cut(s) | 68, 3464 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2894, 2926 |
| BauI | CACGAG | 1 cut(s) | 48 |
| Bbv12I | GWGCWC | 3 cut(s) | 1314, 2065, 3464 |
| BccI | CCATC | 7 cut(s) | 26, 338, 1402, 1678, 2051, 2116, 2278 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1679, 1713 |
| BciT130I | CCWGG | 5 cut(s) | 366, 896, 2000, 2363, 3702 |
| BciVI | GTATCC | 1 cut(s) | 1656 |
| BcnI | CCSGG | 1 cut(s) | 1668 |
| BcoDI | GTCTC | 5 cut(s) | 2472, 2615, 3169, 3394, 3559 |
| BfaI | CTAG | 9 cut(s) | 488, 650, 855, 1208, 1220, 1551, 3038, 3353, 3539 |
| BfmI | CTRYAG | 3 cut(s) | 156, 934, 2430 |
| BfoI | RGCGCY | 1 cut(s) | 3098 |
| BfrI | CTTAAG | 1 cut(s) | 1022 |
| BfuI | GTATCC | 1 cut(s) | 1656 |
| BglII | AGATCT | 3 cut(s) | 1018, 1036, 1990 |
| BlpI | GCTNAGC | 1 cut(s) | 231 |
| Bme1390I | CCNGG | 6 cut(s) | 366, 896, 1668, 2000, 2363, 3702 |
| Bme18I | GGWCC | 3 cut(s) | 134, 167, 3585 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 19, 2566 |
| BmeT110I | CYCGRG | 1 cut(s) | 590 |
| BmgT120I | GGNCC | 4 cut(s) | 134, 167, 3079, 3585 |
| BmiI | GGNNCC | 5 cut(s) | 6, 37, 562, 2359, 3369 |
| BmrFI | CCNGG | 6 cut(s) | 366, 896, 1668, 2000, 2363, 3702 |
| BmrI | ACTGGG | 1 cut(s) | 3338 |
| BmuI | ACTGGG | 1 cut(s) | 3338 |
| BpmI | CTGGAG | 4 cut(s) | 324, 1875, 2384, 2541 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 231 |
| BpuEI | CTTGAG | 6 cut(s) | 540, 1175, 2363, 2399, 2417, 3368 |
| BpuMI | CCSGG | 1 cut(s) | 1668 |
| Bsa29I | ATCGAT | 1 cut(s) | 3528 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1058 |
| BsaI | GGTCTC | 3 cut(s) | 2472, 3169, 3394 |
| BsaJI | CCNNGG | 9 cut(s) | 24, 68, 720, 1289, 1816, 2193, 2361, 3588, 3701 |
| BsaWI | WCCGGW | 2 cut(s) | 1659, 1803 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 297, 327, 2148, 2178 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 292, 1666, 2114, 3076, 3088 |
| Bse118I | RCCGGY | 1 cut(s) | 116 |
| Bse1I | ACTGG | 4 cut(s) | 702, 2145, 2629, 3333 |
| Bse3DI | GCAATG | 5 cut(s) | 196, 210, 1449, 1500, 1964 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1058 |
| BseAI | TCCGGA | 1 cut(s) | 1803 |
| BseBI | CCWGG | 5 cut(s) | 366, 896, 2000, 2363, 3702 |
| BseCI | ATCGAT | 1 cut(s) | 3528 |
| BseDI | CCNNGG | 9 cut(s) | 24, 68, 720, 1289, 1816, 2193, 2361, 3588, 3701 |
| BseJI | GATNNNNATC | 1 cut(s) | 1058 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 292, 1666, 2114, 3076, 3088 |
| BseMI | GCAATG | 5 cut(s) | 196, 210, 1449, 1500, 1964 |
| BseMII | CTCAG | 7 cut(s) | 693, 991, 1248, 1596, 2483, 2583, 3631 |
| BseNI | ACTGG | 4 cut(s) | 702, 2145, 2629, 3333 |
| BseSI | GKGCMC | 2 cut(s) | 2065, 2129 |
| BsgI | GTGCAG | 2 cut(s) | 1401, 1949 |
| Bsh1236I | CGCG | 3 cut(s) | 129, 1488, 2112 |
| BshFI | GGCC | 4 cut(s) | 29, 2489, 2628, 3081 |
| BshVI | ATCGAT | 1 cut(s) | 3528 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1314, 2065, 3464 |
| BsiHKCI | CYCGRG | 1 cut(s) | 590 |
| BsiSI | CCGG | 4 cut(s) | 117, 1660, 1667, 1804 |
| BslFI | GGGAC | 1 cut(s) | 619 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 292, 1666, 2114, 3076, 3088 |
| BsmAI | GTCTC | 5 cut(s) | 2472, 2615, 3169, 3394, 3559 |
| BsmFI | GGGAC | 1 cut(s) | 619 |
| BsnI | GGCC | 4 cut(s) | 29, 2489, 2628, 3081 |
| Bso31I | GGTCTC | 3 cut(s) | 2472, 3169, 3394 |
| BsoBI | CYCGRG | 1 cut(s) | 590 |
| Bsp1286I | GDGCHC | 5 cut(s) | 68, 1314, 2065, 2129, 3464 |
| Bsp13I | TCCGGA | 1 cut(s) | 1803 |
| Bsp1407I | TGTACA | 1 cut(s) | 1337 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 231 |
| Bsp19I | CCATGG | 3 cut(s) | 24, 1289, 2193 |
| BspANI | GGCC | 4 cut(s) | 29, 2489, 2628, 3081 |
| BspCNI | CTCAG | 7 cut(s) | 694, 990, 1249, 1597, 2482, 2584, 3630 |
| BspDI | ATCGAT | 1 cut(s) | 3528 |
| BspEI | TCCGGA | 1 cut(s) | 1803 |
| BspFNI | CGCG | 3 cut(s) | 129, 1488, 2112 |
| BspHI | TCATGA | 2 cut(s) | 93, 808 |
| BspLI | GGNNCC | 5 cut(s) | 6, 37, 562, 2359, 3369 |
| BspMAI | CTGCAG | 2 cut(s) | 160, 2434 |
| BspPI | GGATC | 8 cut(s) | 555, 568, 886, 1138, 3198, 3362, 3375, 3692 |
| BspTI | CTTAAG | 1 cut(s) | 1022 |
| BspTNI | GGTCTC | 3 cut(s) | 2472, 3169, 3394 |
| BsrBI | CCGCTC | 1 cut(s) | 47 |
| BsrDI | GCAATG | 5 cut(s) | 196, 210, 1449, 1500, 1964 |
| BsrFI | RCCGGY | 1 cut(s) | 116 |
| BsrGI | TGTACA | 1 cut(s) | 1337 |
| BsrI | ACTGG | 4 cut(s) | 702, 2145, 2629, 3333 |
| BssAI | RCCGGY | 1 cut(s) | 116 |
| BssECI | CCNNGG | 9 cut(s) | 24, 68, 720, 1289, 1816, 2193, 2361, 3588, 3701 |
| BssNAI | GTATAC | 1 cut(s) | 2911 |
| BssSI | CACGAG | 1 cut(s) | 48 |
| BssT1I | CCWWGG | 7 cut(s) | 24, 68, 720, 1289, 1816, 2193, 3588 |
| Bst1107I | GTATAC | 1 cut(s) | 2911 |
| Bst2BI | CACGAG | 1 cut(s) | 48 |
| Bst2UI | CCWGG | 5 cut(s) | 366, 896, 2000, 2363, 3702 |
| Bst4CI | ACNGT | 5 cut(s) | 434, 938, 1624, 1978, 3600 |
| Bst6I | CTCTTC | 4 cut(s) | 662, 1604, 3248, 3407 |
| BstAFI | CTTAAG | 1 cut(s) | 1022 |
| BstAUI | TGTACA | 1 cut(s) | 1337 |
| BstC8I | GCNNGC | 7 cut(s) | 118, 122, 1447, 1484, 2275, 2862, 3639 |
| BstDSI | CCRYGG | 3 cut(s) | 24, 1289, 2193 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3074 |
| BstFNI | CGCG | 3 cut(s) | 129, 1488, 2112 |
| BstH2I | RGCGCY | 1 cut(s) | 3098 |
| BstHHI | GCGC | 4 cut(s) | 1488, 1783, 2220, 3097 |
| BstMAI | GTCTC | 5 cut(s) | 2472, 2615, 3169, 3394, 3559 |
| BstNI | CCWGG | 5 cut(s) | 366, 896, 2000, 2363, 3702 |
| BstNSI | RCATGY | 3 cut(s) | 1646, 2277, 2987 |
| BstSCI | CCNGG | 6 cut(s) | 364, 894, 1666, 1998, 2361, 3700 |
| BstSFI | CTRYAG | 3 cut(s) | 156, 934, 2430 |
| BstSLI | GKGCMC | 2 cut(s) | 2065, 2129 |
| BstUI | CGCG | 3 cut(s) | 129, 1488, 2112 |
| BstX2I | RGATCY | 7 cut(s) | 560, 891, 1018, 1036, 1990, 3190, 3367 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 802 |
| BstYI | RGATCY | 7 cut(s) | 560, 891, 1018, 1036, 1990, 3190, 3367 |
| BstZ17I | GTATAC | 1 cut(s) | 2911 |
| Bsu15I | ATCGAT | 1 cut(s) | 3528 |
| BsuI | GTATCC | 1 cut(s) | 1656 |
| BsuRI | GGCC | 4 cut(s) | 29, 2489, 2628, 3081 |
| BsuTUI | ATCGAT | 1 cut(s) | 3528 |
| BtgI | CCRYGG | 3 cut(s) | 24, 1289, 2193 |
| BtgZI | GCGATG | 1 cut(s) | 3351 |
| BtsI | GCAGTG | 1 cut(s) | 3482 |
| BtsIMutI | CAGTG | 8 cut(s) | 447, 911, 1974, 2152, 2589, 3326, 3400, 3482 |
| Cac8I | GCNNGC | 7 cut(s) | 118, 122, 1447, 1484, 2275, 2862, 3639 |
| CaiI | CAGNNNCTG | 3 cut(s) | 292, 2476, 2782 |
| CciI | TCATGA | 2 cut(s) | 93, 808 |
| CfoI | GCGC | 4 cut(s) | 1488, 1783, 2220, 3097 |
| Cfr10I | RCCGGY | 1 cut(s) | 116 |
| Cfr13I | GGNCC | 4 cut(s) | 134, 167, 3079, 3585 |
| ClaI | ATCGAT | 1 cut(s) | 3528 |
| CseI | GACGC | 2 cut(s) | 45, 118 |
| Csp6I | GTAC | 1 cut(s) | 1338 |
| CviQI | GTAC | 1 cut(s) | 1338 |
| DraI | TTTAAA | 1 cut(s) | 1356 |
| DraIII | CACNNNGTG | 1 cut(s) | 2114 |
| DriI | GACNNNNNGTC | 2 cut(s) | 19, 2566 |
| EaeI | YGGCCR | 2 cut(s) | 27, 2626 |
| Eam1104I | CTCTTC | 4 cut(s) | 662, 1604, 3248, 3407 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 19, 2566 |
| EarI | CTCTTC | 4 cut(s) | 662, 1604, 3248, 3407 |
| Ecl136II | GAGCTC | 1 cut(s) | 3462 |
| Eco130I | CCWWGG | 7 cut(s) | 24, 68, 720, 1289, 1816, 2193, 3588 |
| Eco24I | GRGCYC | 2 cut(s) | 68, 3464 |
| Eco31I | GGTCTC | 3 cut(s) | 2472, 3169, 3394 |
| Eco32I | GATATC | 1 cut(s) | 2249 |
| Eco47I | GGWCC | 3 cut(s) | 134, 167, 3585 |
| Eco47III | AGCGCT | 1 cut(s) | 3096 |
| Eco53kI | GAGCTC | 1 cut(s) | 3462 |
| Eco57I | CTGAAG | 7 cut(s) | 471, 497, 935, 1061, 1607, 2498, 3399 |
| Eco88I | CYCGRG | 1 cut(s) | 590 |
| EcoICRI | GAGCTC | 1 cut(s) | 3462 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3074 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3079 |
| EcoRI | GAATTC | 2 cut(s) | 1225, 2323 |
| EcoRII | CCWGG | 5 cut(s) | 364, 894, 1998, 2361, 3700 |
| EcoRV | GATATC | 1 cut(s) | 2249 |
| EcoT14I | CCWWGG | 7 cut(s) | 24, 68, 720, 1289, 1816, 2193, 3588 |
| EcoT38I | GRGCYC | 2 cut(s) | 68, 3464 |
| ErhI | CCWWGG | 7 cut(s) | 24, 68, 720, 1289, 1816, 2193, 3588 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 564, 596, 948, 980, 1065, 1097 |
| FaqI | GGGAC | 1 cut(s) | 619 |
| FauI | CCCGC | 3 cut(s) | 1438, 2087, 2853 |
| FauNDI | CATATG | 2 cut(s) | 945, 2017 |
| FblI | GTMKAC | 3 cut(s) | 483, 933, 2910 |
| FriOI | GRGCYC | 2 cut(s) | 68, 3464 |
| FspBI | CTAG | 9 cut(s) | 488, 650, 855, 1208, 1220, 1551, 3038, 3353, 3539 |
| GlaI | GCGC | 4 cut(s) | 1487, 1782, 2219, 3096 |
| GsuI | CTGGAG | 4 cut(s) | 324, 1875, 2384, 2541 |
| HaeII | RGCGCY | 1 cut(s) | 3098 |
| HaeIII | GGCC | 4 cut(s) | 29, 2489, 2628, 3081 |
| HapII | CCGG | 4 cut(s) | 117, 1660, 1667, 1804 |
| HgaI | GACGC | 2 cut(s) | 45, 118 |
| HhaI | GCGC | 4 cut(s) | 1488, 1783, 2220, 3097 |
| Hin6I | GCGC | 4 cut(s) | 1486, 1781, 2218, 3095 |
| HinP1I | GCGC | 4 cut(s) | 1486, 1781, 2218, 3095 |
| HincII | GTYRAC | 3 cut(s) | 484, 2599, 2649 |
| HindII | GTYRAC | 3 cut(s) | 484, 2599, 2649 |
| HindIII | AAGCTT | 3 cut(s) | 1349, 2951, 3023 |
| HpaI | GTTAAC | 2 cut(s) | 2599, 2649 |
| HpaII | CCGG | 4 cut(s) | 117, 1660, 1667, 1804 |
| HphI | GGTGA | 4 cut(s) | 275, 530, 2537, 3458 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 134 |
| HpyCH4III | ACNGT | 5 cut(s) | 434, 938, 1624, 1978, 3600 |
| HspAI | GCGC | 4 cut(s) | 1486, 1781, 2218, 3095 |
| Kpn2I | TCCGGA | 1 cut(s) | 1803 |
| KroI | GCCGGC | 1 cut(s) | 116 |
| KroNI | GCCGGC | 1 cut(s) | 118 |
| KspAI | GTTAAC | 2 cut(s) | 2599, 2649 |
| LmnI | GCTCC | 7 cut(s) | 4, 41, 53, 259, 919, 2182, 2917 |
| MaeI | CTAG | 9 cut(s) | 488, 650, 855, 1208, 1220, 1551, 3038, 3353, 3539 |
| MaeIII | GTNAC | 6 cut(s) | 454, 768, 1825, 2047, 3065, 3202 |
| MbiI | CCGCTC | 1 cut(s) | 47 |
| MflI | RGATCY | 7 cut(s) | 560, 891, 1018, 1036, 1990, 3190, 3367 |
| MhlI | GDGCHC | 5 cut(s) | 68, 1314, 2065, 2129, 3464 |
| MlsI | TGGCCA | 1 cut(s) | 2628 |
| MluI | ACGCGT | 1 cut(s) | 127 |
| MluNI | TGGCCA | 1 cut(s) | 2628 |
| MlyI | GAGTC | 6 cut(s) | 29, 489, 1085, 1124, 1621, 3353 |
| MmeI | TCCRAC | 5 cut(s) | 63, 145, 1680, 3240, 3398 |
| Mox20I | TGGCCA | 1 cut(s) | 2628 |
| MreI | CGCCGGCG | 1 cut(s) | 116 |
| MroI | TCCGGA | 1 cut(s) | 1803 |
| MroNI | GCCGGC | 1 cut(s) | 116 |
| MroXI | GAANNNNTTC | 6 cut(s) | 360, 576, 1164, 1899, 2994, 3024 |
| MscI | TGGCCA | 1 cut(s) | 2628 |
| MslI | CAYNNNNRTG | 3 cut(s) | 335, 2147, 2799 |
| Msp20I | TGGCCA | 1 cut(s) | 2628 |
| MspA1I | CMGCKG | 3 cut(s) | 1174, 2476, 3731 |
| MspCI | CTTAAG | 1 cut(s) | 1022 |
| MspI | CCGG | 4 cut(s) | 117, 1660, 1667, 1804 |
| MspR9I | CCNGG | 6 cut(s) | 366, 896, 1668, 2000, 2363, 3702 |
| MvaI | CCWGG | 5 cut(s) | 366, 896, 2000, 2363, 3702 |
| MvnI | CGCG | 3 cut(s) | 129, 1488, 2112 |
| NaeI | GCCGGC | 1 cut(s) | 118 |
| NciI | CCSGG | 1 cut(s) | 1668 |
| NcoI | CCATGG | 3 cut(s) | 24, 1289, 2193 |
| NdeI | CATATG | 2 cut(s) | 945, 2017 |
| NgoMIV | GCCGGC | 1 cut(s) | 116 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 37, 562, 2359, 3369 |
| NmuCI | GTSAC | 4 cut(s) | 768, 1825, 3065, 3202 |
| NspI | RCATGY | 3 cut(s) | 1646, 2277, 2987 |
| OliI | CACNNNNGTG | 1 cut(s) | 2147 |
| PaeI | GCATGC | 1 cut(s) | 2277 |
| PaeR7I | CTCGAG | 1 cut(s) | 590 |
| PagI | TCATGA | 2 cut(s) | 93, 808 |
| PdiI | GCCGGC | 1 cut(s) | 118 |
| PdmI | GAANNNNTTC | 6 cut(s) | 360, 576, 1164, 1899, 2994, 3024 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 292, 2114 |
| PfoI | TCCNGGA | 2 cut(s) | 364, 894 |
| PleI | GAGTC | 6 cut(s) | 28, 488, 1085, 1124, 1620, 3353 |
| PpsI | GAGTC | 6 cut(s) | 28, 488, 1085, 1124, 1620, 3353 |
| Psp124BI | GAGCTC | 1 cut(s) | 3464 |
| Psp6I | CCWGG | 5 cut(s) | 364, 894, 1998, 2361, 3700 |
| PspGI | CCWGG | 5 cut(s) | 364, 894, 1998, 2361, 3700 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 37, 562, 2359, 3369 |
| PspPI | GGNCC | 4 cut(s) | 134, 167, 3079, 3585 |
| PspXI | VCTCGAGB | 1 cut(s) | 590 |
| PstI | CTGCAG | 2 cut(s) | 160, 2434 |
| PstNI | CAGNNNCTG | 3 cut(s) | 292, 2476, 2782 |
| PsuI | RGATCY | 7 cut(s) | 560, 891, 1018, 1036, 1990, 3190, 3367 |
| PvuII | CAGCTG | 3 cut(s) | 1174, 2476, 3731 |
| RsaI | GTAC | 1 cut(s) | 1339 |
| RsaNI | GTAC | 1 cut(s) | 1338 |
| RseI | CAYNNNNRTG | 3 cut(s) | 335, 2147, 2799 |
| SacI | GAGCTC | 1 cut(s) | 3464 |
| SalI | GTCGAC | 1 cut(s) | 482 |
| Sau96I | GGNCC | 4 cut(s) | 134, 167, 3079, 3585 |
| SchI | GAGTC | 6 cut(s) | 29, 489, 1085, 1124, 1621, 3353 |
| ScrFI | CCNGG | 6 cut(s) | 366, 896, 1668, 2000, 2363, 3702 |
| SduI | GDGCHC | 5 cut(s) | 68, 1314, 2065, 2129, 3464 |
| SfcI | CTRYAG | 3 cut(s) | 156, 934, 2430 |
| Sfr274I | CTCGAG | 1 cut(s) | 590 |
| SgrAI | CRCCGGYG | 1 cut(s) | 116 |
| SinI | GGWCC | 3 cut(s) | 134, 167, 3585 |
| SlaI | CTCGAG | 1 cut(s) | 590 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 335, 2147, 2799 |
| SmlI | CTYRAG | 8 cut(s) | 555, 590, 1022, 1154, 2342, 2396, 2414, 3347 |
| SmoI | CTYRAG | 8 cut(s) | 555, 590, 1022, 1154, 2342, 2396, 2414, 3347 |
| SphI | GCATGC | 1 cut(s) | 2277 |
| SspI | AATATT | 1 cut(s) | 3427 |
| SspMI | CTAG | 9 cut(s) | 488, 650, 855, 1208, 1220, 1551, 3038, 3353, 3539 |
| SstI | GAGCTC | 1 cut(s) | 3464 |
| StyD4I | CCNGG | 6 cut(s) | 364, 894, 1666, 1998, 2361, 3700 |
| StyI | CCWWGG | 7 cut(s) | 24, 68, 720, 1289, 1816, 2193, 3588 |
| TaaI | ACNGT | 5 cut(s) | 434, 938, 1624, 1978, 3600 |
| TaqI | TCGA | 6 cut(s) | 483, 591, 1133, 1326, 3528, 3633 |
| TaqII | GACCGA | 2 cut(s) | 122, 3660 |
| TatI | WGTACW | 1 cut(s) | 1337 |
| TauI | GCSGC | 3 cut(s) | 10, 2607, 3536 |
| TscAI | CASTG | 8 cut(s) | 454, 918, 1981, 2152, 2596, 3333, 3400, 3489 |
| TseFI | GTSAC | 4 cut(s) | 768, 1825, 3065, 3202 |
| Tsp45I | GTSAC | 4 cut(s) | 768, 1825, 3065, 3202 |
| TspGWI | ACGGA | 1 cut(s) | 1696 |
| TspRI | CASTG | 8 cut(s) | 454, 918, 1981, 2152, 2596, 3333, 3400, 3489 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 292, 2114 |
| Vha464I | CTTAAG | 1 cut(s) | 1022 |
| VneI | GTGCAC | 1 cut(s) | 2061 |
| VpaK11BI | GGWCC | 3 cut(s) | 134, 167, 3585 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3074 |
| XapI | RAATTY | 9 cut(s) | 350, 995, 1215, 1225, 1499, 2323, 2707, 2994, 3048 |
| XbaI | TCTAGA | 1 cut(s) | 1219 |
| XceI | RCATGY | 3 cut(s) | 1646, 2277, 2987 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 826, 2621, 3414 |
| XhoI | CTCGAG | 1 cut(s) | 590 |
| XmiI | GTMKAC | 3 cut(s) | 483, 933, 2910 |
| XmnI | GAANNNNTTC | 6 cut(s) | 360, 576, 1164, 1899, 2994, 3024 |
| XspI | CTAG | 9 cut(s) | 488, 650, 855, 1208, 1220, 1551, 3038, 3353, 3539 |