Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Forward (+)

60860345 .. 60869171

Gene Structure 8827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG412200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3831 bp

ATGGAGACGCAGGACGACGAGTCCATGGCCGATGGCTCCGACACCGCTCGTGGAGCGTCCAGGGGCCCAAGGCTGTTCATCAGAGAAATGGTCATGAGGAACTTCAAGTCTTACGCCGGCGAGCAACGGGTCGGTCCTTTCCACAAGAGCTTTTCTGCAGTTGTTGGACCAAATGGGAGTGGTAAAAGCAATGTGATAGATGCAATGCTCTTTGTATTTGGAAAACGAGCTAAGCAGATGCGACTGAACAAAGTTTCGGAGCTTATACATAACTCCACCAATCACCAGAATCTGGATAGTGCTGGAGTTTCTGTTCATTTCCAAGAGATCATTGATATGGATGATGGAGAATTTGAAGTTGTTCCAGGAAGTGATTTTGTAATTACGAGAATAGCATATCGGGATAACACCTCCAAGTATTACATCAATGACCGTGCAAGTAATTTCACTGAAGTTACCAAGAAACTGAAAGGGAAAGGAGTCGACCTAGACAACAATCGTTTTTTGATTCTTCAGGGTGAAGTTGAGCAGATTTCACTTATGAAGCCAAAAGCTCAAGGATCCCATGATGAAGGTTTTCTTGAATACCTCGAGGACATTATTGGGACTAACAAATATGTTGAAAAAATTGATGAAGCATATAAAGAGCTAGAATCCCTTAATGAGAAGAGGTCTGGTGTTGTGCAAATGGTTAAACTGGCTGAGAAAGAAAGAGATGTCTTGGAGGATGTGAAAAATGAAGCGGAAGCCTATATGCTGAAAGAGTTGTCACTTCTGAAATGGCAAGAGAAAGCCACAAAATTGGCTCATGAAGATACCACTGCAAAAATGGCTGATCTAAAGGAGAATATAACTAGCTTAGAAGAAAATCTAAAGGCCGAAAGGGAGAAGATCCAGGAGAGTAATAATGCACTGAAGGAGCTTGATTCTGTCTACAGTAAACATATGAAACAACAAGAGGAACTTGATAATGCCCTCAGAAGCAGTAATGAAGAATTTAAGGAGTTTGAAAGGGAGGATCTTAAGTATAGGGAAGATCTGAAGCATAAGAAGATGAAGATCAAGAAACTCAAAGATAAACTTCAAAAGGACTCGTTAAAGATTTCTGACACAGAGAAGGAGTGTGAGGACTCGACAAATCTGATCCCAAAACTTGAGGAAAGTATTCCGCAACTGCAAAAACGATTGTTGGATGAAGAAAAAGTCCTAGAGGAAATTCTAGAGAATTCAAAAGTGGAAACTGAAAAATATCGCTCTGAGCTTACAAAAGTTCGTGCTGAATTAGAACCATGGGAAAAGCAACTGATTGAGCACAAGGGGAAACTCGAAGTTAAATGTACCGAACAAAAGCTTTTAAATGAGAAGCATGAAGCTGGTCGTGCAGCTTTTGAAGATGCTCGTAAGCAGATGGATGATATATTGGGAAGGATAGAAACAAAAACTGCGGGCATTGCAAGGATTCAAAGCGAATTAGAAATGAGCAAGCGCGAAGCAATGGAATTTCGCAATGAGGAACAAGAATACATCAGAGAACAAGAGGCTCTCATTCCTAGTGAACAGGCTGCAAGACAGAAGGTTGCAGAACTGAAGTCTGTTCTGGATTCTGAGAAGAGTCAGGGAACAGTTCTAAAAGCAATTCTACATGCTAAGGATTCCAACCGGATACCGGGAATATATGGACGGATGGGTGATTTAGGTGCTATTGATGCAAAATATGACGTTGCCATATCAACAGCTTGTGCTGGACTTGATTATATTGTGGTGGAAACAACTATTGCAGCACAATCATGTGTTGAGCTACTCCGGAGAGAGAACCTTGGAATTGTGACTTGCATGATATTGGAAAAGCAAGCTAATCTCTTACCAAAGTTGAAGGAGAAGATAAGCACTCCAGAAGGAGTTCCTCGCCTTTTTGATTTAGTTAGGGTGCAGGATGAGAGAATGAAACTTGCTTTTTATGCAGCATTGCGAAACACTGTTGTAGCTAAAGATCTTGACCAGGCAACACGAATTGCATATGGAGGGAATCACGATTTTCGGCGAGTGGTAACACTTGATGGTGCACTATTTGAAAATTCTGGCACTATGAGTGGCGGGGGAGGTAAGCCACGTGGTGGCAAGATGGGCACTTCTGTTCGTGCCACCAGTGTGTCAGGAGAAGCTGTTGCGATTGCTGAAAAGGAGCTTGAAGCCATGGCTTCTTCATTAAATAATTTGCGCCAGAAAATTGCTGATGCAGCAAGGAGATATCAAGCCTCTGAAAATGCAGTTGCACGCTTGGAGATGGACTTAGCTAAAAGCCAGAAAGAGATTGACAGCCTGAATTCGCAACATGATTATCTTGAGAAGCAAATTGGTTCCCTGGAGGCTGCATCACAGCCGAAGAAGGATGAGCTTGAGAAATTGGATGAACTCAAGAAGCATATTGCTGCAGAAGAAAGAGAGATTCAGAAACTTATACAAGGGTCTCAGCAGCTGAAGCAGAAGGCCACGAAACTTCAGAGCAACATAGAAAATGCTGGAGGTGAGAGGTTAAAAGCACAGAAGTCAAAAGTCAAGGATATTCAGTCTGATATTGACAAAAATAACACTGAGGTTAACCGTCGCAAAGTCCAAATTGAGACTGGCCAGAAAACTATAAAGAAGTTAACCAATGTGATTGAAGAATCAAAGAATGAGATAGAACGACTTGGTAAGGAGAAGGAAAATTTGTCTGGCAAGTTCAAAGAAATAGAAAAAAAGGCATTTGAAGTTAAAGAGAAATACGAGCAAACACAGAAGGTTTACATTTTTTACTTTATTCTTATGCAACCTGGTCAGTTATATGGAAAGAAATGTGTCTTACTGCTATATGATTTTCTTTATCTTTTGCAGCTGATTGATAATCATAAAGATGTGTTAGATAAAGCGAAATCTGACTATGACAATATGAAAAAGACTTTGTATGAATTGCGGGCATCAGAGGGTAATGCTGTTTTTCAATTACAAGAAAAGAAGAAGGTATACAAGGAGCAGGAATTGAAGGGAAGGCATTACAACAAAAAGCTTGATGACTTGCAAACTGATCTTATGAAGCATATGGAACAAATTCAGAAAGATTTAGTGGACGCGGAAAAGCTTCAAGCAACCCTAGCAGATGAAATTCTTAATAACCCTTGTGACCTTAAAAAGGGCCTTGAAATGGTAGCGCTTCTGGAAGCACAACTGAAAGAGATGAATCCGAATCTTGATTCAGTCGCAGAGTATCGGAGAAAGGTCTCATTATATAATGAACGAGTTGAGGATCTTAATAGGGTCACTCAACAGCGTGATGACATAAAGAGGCAGTATGATGAATGGAGAAAGAAGAGGTTGGATGAGTTCATGGCAGGATTTAATGCTATATCTTTGAAGTTAAAGGAAATGTATCAGATGATTACACTGGGAGGTGATGCAGAACTTGAGCTAGTGGACTCTCTGGATCCCTTCTCTGAAGGTGTTGTTTTCAGTGTGAGACCACCAAAGAAGAGTTGGAAGAATATTGCAAACTTGTCTGGTGGTGAAAAGACGTTGAGCTCATTAGCTCTTGTTTTTGCACTGCATCATTACAAGCCTACACCTCTTTATGTAATGGATGAAATCGATGCCGCCCTAGACTTCAAGAATGTCTCTATTGTGGGTCATTATGTAAAGGACAGGACCAAGGATGCACAGTTCATAATCATAAGCCTTAGAAACAATATGTTCGAGCTGGCGGATCGACTTGTTGGGATATACAAAACTGATAATTGCACAAAAAGCATTACCATTGATCCAGGGAGGTTCGTGGTTTGTGAAAATGCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1276

Amino Acids

145.58

Weight (kDa)

5.97

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	26 - 699	8.6e-30	RecF/RecN/SMC N terminal domain
AAA_29	PF13555	29 - 86	8.2e-06	P-loop containing region of AAA domain
AAA_23	PF13476	30 - 292	4.2e-10	AAA domain
AAA_21	PF13304	51 - 120	5e-06	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	556 - 672	2.8e-20	SMC proteins Flexible Hinge Domain
SMC_N	PF02463	813 - 1258	3.9e-34	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	590
AccB7I	CCANNNNNTGG	2 cut(s)	292, 2114
AccBSI	CCGCTC	1 cut(s)	47
AccI	GTMKAC	3 cut(s)	483, 933, 3003
AccII	CGCG	2 cut(s)	1488, 3110
AccIII	TCCGGA	1 cut(s)	1803
AciI	CCGC	9 cut(s)	45, 743, 1169, 1445, 2094, 2953, 3110, 3627, 3734
AcoI	YGGCCR	2 cut(s)	27, 2626
AcuI	CTGAAG	8 cut(s)	471, 497, 935, 1061, 1607, 2483, 2498, 3492
AcvI	CACGTG	1 cut(s)	2111
AdeI	CACNNNGTG	1 cut(s)	2114
AfaI	GTAC	1 cut(s)	1339
AfeI	AGCGCT	1 cut(s)	3189
AfiI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2114, 3169, 3181
AflII	CTTAAG	1 cut(s)	1022
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	7 cut(s)	59, 364, 894, 1998, 2361, 2812, 3793
AleI	CACNNNNGTG	1 cut(s)	2147
AloI	GAACNNNNNNTCC	4 cut(s)	297, 329, 3677, 3709
Alw21I	GWGCWC	3 cut(s)	1314, 2065, 3557
Alw26I	GTCTC	5 cut(s)	2472, 2615, 3262, 3487, 3652
Alw44I	GTGCAC	1 cut(s)	2061
AlwNI	CAGNNNCTG	2 cut(s)	292, 2476
Ama87I	CYCGRG	1 cut(s)	590
Aor13HI	TCCGGA	1 cut(s)	1803
Aor51HI	AGCGCT	1 cut(s)	3189
AoxI	GGCC	6 cut(s)	27, 64, 876, 2487, 2626, 3172
ApaI	GGGCCC	1 cut(s)	68
ApaLI	GTGCAC	1 cut(s)	2061
Asp700I	GAANNNNTTC	6 cut(s)	360, 576, 1164, 1899, 3087, 3117
AspLEI	GCGC	3 cut(s)	1488, 2220, 3190
AspS9I	GGNCC	6 cut(s)	64, 65, 134, 167, 3172, 3678
AsuC2I	CCSGG	1 cut(s)	1668
AsuHPI	GGTGA	6 cut(s)	275, 530, 1700, 2537, 3440, 3551
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	3 cut(s)	134, 167, 3678
BaeGI	GKGCMC	3 cut(s)	68, 2065, 2129
BalI	TGGCCA	1 cut(s)	2628
BamHI	GGATCC	2 cut(s)	560, 3460
BanII	GRGCYC	2 cut(s)	68, 3557
BarI	GAAGNNNNNNTAC	2 cut(s)	2987, 3019
BauI	CACGAG	1 cut(s)	48
BbrPI	CACGTG	1 cut(s)	2111
Bbv12I	GWGCWC	3 cut(s)	1314, 2065, 3557
BccI	CCATC	7 cut(s)	26, 338, 1402, 1678, 2051, 2116, 2278
BciT130I	CCWGG	7 cut(s)	61, 366, 896, 2000, 2363, 2814, 3795
BciVI	GTATCC	1 cut(s)	1656
BcnI	CCSGG	1 cut(s)	1668
BcoDI	GTCTC	5 cut(s)	2472, 2615, 3262, 3487, 3652
BfaI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 3131, 3446, 3632
BfmI	CTRYAG	3 cut(s)	156, 934, 2430
BfoI	RGCGCY	1 cut(s)	3191
BfrI	CTTAAG	1 cut(s)	1022
BfuI	GTATCC	1 cut(s)	1656
BglII	AGATCT	2 cut(s)	1036, 1990
BlpI	GCTNAGC	1 cut(s)	231
Bme1390I	CCNGG	8 cut(s)	61, 366, 896, 1668, 2000, 2363, 2814, 3795
Bme18I	GGWCC	3 cut(s)	134, 167, 3678
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	6 cut(s)	64, 65, 134, 167, 3172, 3678
BmiI	GGNNCC	6 cut(s)	37, 65, 66, 562, 2359, 3462
BmrFI	CCNGG	8 cut(s)	61, 366, 896, 1668, 2000, 2363, 2814, 3795
BmrI	ACTGGG	1 cut(s)	3431
BmuI	ACTGGG	1 cut(s)	3431
BpmI	CTGGAG	4 cut(s)	324, 1875, 2384, 2541
Bpu10I	CCTNAGC	1 cut(s)	1647
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	6 cut(s)	540, 1175, 2363, 2399, 2417, 3461
BpuMI	CCSGG	1 cut(s)	1668
Bsa29I	ATCGAT	1 cut(s)	3621
BsaAI	YACGTR	1 cut(s)	2111
BsaBI	GATNNNNATC	1 cut(s)	1058
BsaI	GGTCTC	3 cut(s)	2472, 3262, 3487
BsaJI	CCNNGG	9 cut(s)	24, 60, 68, 1289, 1816, 2193, 2361, 3681, 3794
BsaWI	WCCGGW	2 cut(s)	1659, 1803
BsaXI	ACNNNNNCTCC	4 cut(s)	297, 327, 2148, 2178
Bsc4I	CCNNNNNNNGG	5 cut(s)	292, 1666, 2114, 3169, 3181
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	4 cut(s)	702, 2145, 2629, 3426
Bse3DI	GCAATG	6 cut(s)	196, 210, 1449, 1500, 1513, 1964
Bse8I	GATNNNNATC	1 cut(s)	1058
BseAI	TCCGGA	1 cut(s)	1803
BseBI	CCWGG	7 cut(s)	61, 366, 896, 2000, 2363, 2814, 3795
BseCI	ATCGAT	1 cut(s)	3621
BseDI	CCNNGG	9 cut(s)	24, 60, 68, 1289, 1816, 2193, 2361, 3681, 3794
BseJI	GATNNNNATC	1 cut(s)	1058
BseLI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2114, 3169, 3181
BseMI	GCAATG	6 cut(s)	196, 210, 1449, 1500, 1513, 1964
BseMII	CTCAG	6 cut(s)	693, 991, 1248, 1596, 2483, 2583
BseNI	ACTGG	4 cut(s)	702, 2145, 2629, 3426
BseSI	GKGCMC	3 cut(s)	68, 2065, 2129
BsgI	GTGCAG	2 cut(s)	1401, 1949
Bsh1236I	CGCG	2 cut(s)	1488, 3110
BshFI	GGCC	6 cut(s)	29, 66, 878, 2489, 2628, 3174
BshVI	ATCGAT	1 cut(s)	3621
BsiHKAI	GWGCWC	3 cut(s)	1314, 2065, 3557
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	4 cut(s)	117, 1660, 1667, 1804
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2114, 3169, 3181
BsmAI	GTCTC	5 cut(s)	2472, 2615, 3262, 3487, 3652
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	6 cut(s)	29, 66, 878, 2489, 2628, 3174
Bso31I	GGTCTC	3 cut(s)	2472, 3262, 3487
BsoBI	CYCGRG	1 cut(s)	590
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	5 cut(s)	68, 1314, 2065, 2129, 3557
Bsp13I	TCCGGA	1 cut(s)	1803
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp19I	CCATGG	3 cut(s)	24, 1289, 2193
BspACI	CCGC	9 cut(s)	45, 743, 1169, 1445, 2094, 2953, 3110, 3627, 3734
BspANI	GGCC	6 cut(s)	29, 66, 878, 2489, 2628, 3174
BspCNI	CTCAG	6 cut(s)	694, 990, 1249, 1597, 2482, 2584
BspDI	ATCGAT	1 cut(s)	3621
BspEI	TCCGGA	1 cut(s)	1803
BspFNI	CGCG	2 cut(s)	1488, 3110
BspHI	TCATGA	2 cut(s)	93, 808
BspLI	GGNNCC	6 cut(s)	37, 65, 66, 562, 2359, 3462
BspMAI	CTGCAG	2 cut(s)	160, 2434
BspTI	CTTAAG	1 cut(s)	1022
BspTNI	GGTCTC	3 cut(s)	2472, 3262, 3487
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	6 cut(s)	196, 210, 1449, 1500, 1513, 1964
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	4 cut(s)	702, 2145, 2629, 3426
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	9 cut(s)	24, 60, 68, 1289, 1816, 2193, 2361, 3681, 3794
BssNAI	GTATAC	1 cut(s)	3004
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	6 cut(s)	24, 68, 1289, 1816, 2193, 3681
Bst1107I	GTATAC	1 cut(s)	3004
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	7 cut(s)	61, 366, 896, 2000, 2363, 2814, 3795
Bst4CI	ACNGT	6 cut(s)	434, 938, 1624, 1978, 2603, 3693
Bst6I	CTCTTC	4 cut(s)	662, 1604, 3341, 3500
BstAFI	CTTAAG	1 cut(s)	1022
BstBAI	YACGTR	1 cut(s)	2111
BstC8I	GCNNGC	8 cut(s)	118, 122, 1447, 1484, 1851, 2275, 2955, 3732
BstDSI	CCRYGG	3 cut(s)	24, 1289, 2193
BstENI	CCTNNNNNAGG	1 cut(s)	3167
BstFNI	CGCG	2 cut(s)	1488, 3110
BstH2I	RGCGCY	1 cut(s)	3191
BstHHI	GCGC	3 cut(s)	1488, 2220, 3190
BstMAI	GTCTC	5 cut(s)	2472, 2615, 3262, 3487, 3652
BstNI	CCWGG	7 cut(s)	61, 366, 896, 2000, 2363, 2814, 3795
BstNSI	RCATGY	1 cut(s)	1646
BstSCI	CCNGG	8 cut(s)	59, 364, 894, 1666, 1998, 2361, 2812, 3793
BstSFI	CTRYAG	3 cut(s)	156, 934, 2430
BstSLI	GKGCMC	3 cut(s)	68, 2065, 2129
BstUI	CGCG	2 cut(s)	1488, 3110
BstX2I	RGATCY	7 cut(s)	560, 891, 1018, 1036, 1990, 3283, 3460
BstXI	CCANNNNNNTGG	1 cut(s)	802
BstYI	RGATCY	7 cut(s)	560, 891, 1018, 1036, 1990, 3283, 3460
BstZ17I	GTATAC	1 cut(s)	3004
Bsu15I	ATCGAT	1 cut(s)	3621
BsuI	GTATCC	1 cut(s)	1656
BsuRI	GGCC	6 cut(s)	29, 66, 878, 2489, 2628, 3174
BsuTUI	ATCGAT	1 cut(s)	3621
BtgI	CCRYGG	3 cut(s)	24, 1289, 2193
BtsI	GCAGTG	2 cut(s)	819, 3575
BtsIMutI	CAGTG	9 cut(s)	447, 819, 911, 1974, 2152, 2589, 3419, 3493, 3575
Cac8I	GCNNGC	8 cut(s)	118, 122, 1447, 1484, 1851, 2275, 2955, 3732
CaiI	CAGNNNCTG	2 cut(s)	292, 2476
CciI	TCATGA	2 cut(s)	93, 808
CfoI	GCGC	3 cut(s)	1488, 2220, 3190
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	6 cut(s)	64, 65, 134, 167, 3172, 3678
ClaI	ATCGAT	1 cut(s)	3621
CseI	GACGC	3 cut(s)	16, 45, 3116
CsiI	ACCWGGT	1 cut(s)	2812
Csp6I	GTAC	1 cut(s)	1338
CviQI	GTAC	1 cut(s)	1338
DraI	TTTAAA	1 cut(s)	1356
DraIII	CACNNNGTG	1 cut(s)	2114
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	2 cut(s)	27, 2626
Eam1104I	CTCTTC	4 cut(s)	662, 1604, 3341, 3500
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	4 cut(s)	662, 1604, 3341, 3500
EciI	GGCGGA	1 cut(s)	3749
Ecl136II	GAGCTC	1 cut(s)	3555
Eco130I	CCWWGG	6 cut(s)	24, 68, 1289, 1816, 2193, 3681
Eco24I	GRGCYC	2 cut(s)	68, 3557
Eco31I	GGTCTC	3 cut(s)	2472, 3262, 3487
Eco32I	GATATC	1 cut(s)	2249
Eco47I	GGWCC	3 cut(s)	134, 167, 3678
Eco47III	AGCGCT	1 cut(s)	3189
Eco53kI	GAGCTC	1 cut(s)	3555
Eco57I	CTGAAG	8 cut(s)	471, 497, 935, 1061, 1607, 2483, 2498, 3492
Eco72I	CACGTG	1 cut(s)	2111
Eco88I	CYCGRG	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	3555
EcoNI	CCTNNNNNAGG	1 cut(s)	3167
EcoO109I	RGGNCCY	2 cut(s)	64, 3172
EcoRI	GAATTC	2 cut(s)	1225, 2323
EcoRII	CCWGG	7 cut(s)	59, 364, 894, 1998, 2361, 2812, 3793
EcoRV	GATATC	1 cut(s)	2249
EcoT14I	CCWWGG	6 cut(s)	24, 68, 1289, 1816, 2193, 3681
EcoT38I	GRGCYC	2 cut(s)	68, 3557
ErhI	CCWWGG	6 cut(s)	24, 68, 1289, 1816, 2193, 3681
FalI	AAGNNNNNCTT	6 cut(s)	564, 596, 948, 980, 1065, 1097
FaqI	GGGAC	1 cut(s)	619
FauI	CCCGC	3 cut(s)	1438, 2087, 2946
FauNDI	CATATG	3 cut(s)	945, 2017, 3078
FblI	GTMKAC	3 cut(s)	483, 933, 3003
FriOI	GRGCYC	2 cut(s)	68, 3557
FspBI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 3131, 3446, 3632
GlaI	GCGC	3 cut(s)	1487, 2219, 3189
GsuI	CTGGAG	4 cut(s)	324, 1875, 2384, 2541
HaeII	RGCGCY	1 cut(s)	3191
HaeIII	GGCC	6 cut(s)	29, 66, 878, 2489, 2628, 3174
HapII	CCGG	4 cut(s)	117, 1660, 1667, 1804
HgaI	GACGC	3 cut(s)	16, 45, 3116
HhaI	GCGC	3 cut(s)	1488, 2220, 3190
Hin6I	GCGC	3 cut(s)	1486, 2218, 3188
HinP1I	GCGC	3 cut(s)	1486, 2218, 3188
HincII	GTYRAC	3 cut(s)	484, 2599, 2649
HindII	GTYRAC	3 cut(s)	484, 2599, 2649
HindIII	AAGCTT	3 cut(s)	1349, 3044, 3116
HpaI	GTTAAC	2 cut(s)	2599, 2649
HpaII	CCGG	4 cut(s)	117, 1660, 1667, 1804
HphI	GGTGA	6 cut(s)	275, 530, 1700, 2537, 3440, 3551
Hpy99I	CGWCG	2 cut(s)	20, 2607
HpyCH4III	ACNGT	6 cut(s)	434, 938, 1624, 1978, 2603, 3693
HpyCH4IV	ACGT	3 cut(s)	1719, 2110, 3548
HpySE526I	ACGT	3 cut(s)	1719, 2110, 3548
HspAI	GCGC	3 cut(s)	1486, 2218, 3188
Kpn2I	TCCGGA	1 cut(s)	1803
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
KspAI	GTTAAC	2 cut(s)	2599, 2649
LmnI	GCTCC	6 cut(s)	41, 53, 259, 919, 2182, 3010
MabI	ACCWGGT	1 cut(s)	2812
MaeI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 3131, 3446, 3632
MaeII	ACGT	3 cut(s)	1719, 2110, 3548
MaeIII	GTNAC	6 cut(s)	454, 768, 1825, 2047, 3158, 3295
MbiI	CCGCTC	1 cut(s)	47
MflI	RGATCY	7 cut(s)	560, 891, 1018, 1036, 1990, 3283, 3460
MhlI	GDGCHC	5 cut(s)	68, 1314, 2065, 2129, 3557
MlsI	TGGCCA	1 cut(s)	2628
MluNI	TGGCCA	1 cut(s)	2628
MlyI	GAGTC	6 cut(s)	29, 489, 1085, 1124, 1621, 3446
MmeI	TCCRAC	6 cut(s)	63, 145, 1170, 1680, 3333, 3491
Mox20I	TGGCCA	1 cut(s)	2628
MreI	CGCCGGCG	1 cut(s)	116
MroI	TCCGGA	1 cut(s)	1803
MroNI	GCCGGC	1 cut(s)	116
MroXI	GAANNNNTTC	6 cut(s)	360, 576, 1164, 1899, 3087, 3117
MscI	TGGCCA	1 cut(s)	2628
MslI	CAYNNNNRTG	4 cut(s)	335, 1786, 2147, 2892
Msp20I	TGGCCA	1 cut(s)	2628
MspA1I	CMGCKG	3 cut(s)	2476, 2875, 3824
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	4 cut(s)	117, 1660, 1667, 1804
MspR9I	CCNGG	8 cut(s)	61, 366, 896, 1668, 2000, 2363, 2814, 3795
MvaI	CCWGG	7 cut(s)	61, 366, 896, 2000, 2363, 2814, 3795
MvnI	CGCG	2 cut(s)	1488, 3110
NaeI	GCCGGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	1668
NcoI	CCATGG	3 cut(s)	24, 1289, 2193
NdeI	CATATG	3 cut(s)	945, 2017, 3078
NgoMIV	GCCGGC	1 cut(s)	116
NlaIV	GGNNCC	6 cut(s)	37, 65, 66, 562, 2359, 3462
NmuCI	GTSAC	4 cut(s)	768, 1825, 3158, 3295
NspI	RCATGY	1 cut(s)	1646
OliI	CACNNNNGTG	1 cut(s)	2147
PaeR7I	CTCGAG	1 cut(s)	590
PagI	TCATGA	2 cut(s)	93, 808
PdiI	GCCGGC	1 cut(s)	118
PdmI	GAANNNNTTC	6 cut(s)	360, 576, 1164, 1899, 3087, 3117
PflMI	CCANNNNNTGG	2 cut(s)	292, 2114
PfoI	TCCNGGA	2 cut(s)	364, 894
PleI	GAGTC	6 cut(s)	28, 488, 1085, 1124, 1620, 3446
PmaCI	CACGTG	1 cut(s)	2111
PmlI	CACGTG	1 cut(s)	2111
PpsI	GAGTC	6 cut(s)	28, 488, 1085, 1124, 1620, 3446
Ppu21I	YACGTR	1 cut(s)	2111
Psp124BI	GAGCTC	1 cut(s)	3557
Psp6I	CCWGG	7 cut(s)	59, 364, 894, 1998, 2361, 2812, 3793
PspCI	CACGTG	1 cut(s)	2111
PspGI	CCWGG	7 cut(s)	59, 364, 894, 1998, 2361, 2812, 3793
PspN4I	GGNNCC	6 cut(s)	37, 65, 66, 562, 2359, 3462
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	6 cut(s)	64, 65, 134, 167, 3172, 3678
PspXI	VCTCGAGB	1 cut(s)	590
PstI	CTGCAG	2 cut(s)	160, 2434
PstNI	CAGNNNCTG	2 cut(s)	292, 2476
PsuI	RGATCY	7 cut(s)	560, 891, 1018, 1036, 1990, 3283, 3460
PvuII	CAGCTG	3 cut(s)	2476, 2875, 3824
RsaI	GTAC	1 cut(s)	1339
RsaNI	GTAC	1 cut(s)	1338
RseI	CAYNNNNRTG	4 cut(s)	335, 1786, 2147, 2892
SacI	GAGCTC	1 cut(s)	3557
SalI	GTCGAC	1 cut(s)	482
Sau96I	GGNCC	6 cut(s)	64, 65, 134, 167, 3172, 3678
SchI	GAGTC	6 cut(s)	29, 489, 1085, 1124, 1621, 3446
ScrFI	CCNGG	8 cut(s)	61, 366, 896, 1668, 2000, 2363, 2814, 3795
SduI	GDGCHC	5 cut(s)	68, 1314, 2065, 2129, 3557
SexAI	ACCWGGT	1 cut(s)	2812
SfcI	CTRYAG	3 cut(s)	156, 934, 2430
Sfr274I	CTCGAG	1 cut(s)	590
SgrAI	CRCCGGYG	1 cut(s)	116
SinI	GGWCC	3 cut(s)	134, 167, 3678
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	4 cut(s)	335, 1786, 2147, 2892
SmlI	CTYRAG	8 cut(s)	555, 590, 1022, 1154, 2342, 2396, 2414, 3440
SmoI	CTYRAG	8 cut(s)	555, 590, 1022, 1154, 2342, 2396, 2414, 3440
SsiI	CCGC	9 cut(s)	45, 743, 1169, 1445, 2094, 2953, 3110, 3627, 3734
SspI	AATATT	1 cut(s)	3520
SspMI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 3131, 3446, 3632
SstI	GAGCTC	1 cut(s)	3557
StyD4I	CCNGG	8 cut(s)	59, 364, 894, 1666, 1998, 2361, 2812, 3793
StyI	CCWWGG	6 cut(s)	24, 68, 1289, 1816, 2193, 3681
TaaI	ACNGT	6 cut(s)	434, 938, 1624, 1978, 2603, 3693
TaiI	ACGT	3 cut(s)	1722, 2113, 3551
TaqI	TCGA	7 cut(s)	483, 591, 1133, 1326, 3621, 3726, 3739
TaqII	GACCGA	1 cut(s)	122
TauI	GCSGC	1 cut(s)	3629
TscAI	CASTG	9 cut(s)	454, 826, 918, 1981, 2152, 2596, 3426, 3493, 3582
TseFI	GTSAC	4 cut(s)	768, 1825, 3158, 3295
Tsp45I	GTSAC	4 cut(s)	768, 1825, 3158, 3295
TspGWI	ACGGA	1 cut(s)	1696
TspRI	CASTG	9 cut(s)	454, 826, 918, 1981, 2152, 2596, 3426, 3493, 3582
Van91I	CCANNNNNTGG	2 cut(s)	292, 2114
Vha464I	CTTAAG	1 cut(s)	1022
VneI	GTGCAC	1 cut(s)	2061
VpaK11BI	GGWCC	3 cut(s)	134, 167, 3678
XagI	CCTNNNNNAGG	1 cut(s)	3167
XbaI	TCTAGA	1 cut(s)	1219
XceI	RCATGY	1 cut(s)	1646
XcmI	CCANNNNNNNNNTGG	3 cut(s)	826, 2621, 3507
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	3 cut(s)	483, 933, 3003
XmnI	GAANNNNTTC	6 cut(s)	360, 576, 1164, 1899, 3087, 3117
XspI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 3131, 3446, 3632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.