Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Forward (+)

21803773 .. 21813048

Gene Structure 9276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30910.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3723 bp

ATGGAATCGGCGCCGGACGAGTTCATCAGCGACGGCTTGGGCTCGAGGAAGCCTCGGCTTTTCATCAGGGAAATGGTCATGAGGAACTTCAAGTCTTACGCCGGTGAACAACGCGTTGGTCCTTTCCACAAGAGCTTTTCGGCAGTTGTTGGACCTAATGGGAGTGGGAAGAGCAATGTCATAGATGCAATGCTGTTTGTATTCGGAAAGCGAGCTAAGCAGATGCGACTTAACAGAGTTTCGGAGCTCATTCATAACTCCACCGATTGCCAGAATATGGATTGTGCCGGAGTTTCTGTTCATTTCCAGGAGATCATTGATTTGGACGATGGGACGTTTGAAGCTGTTCCAGGAAGTGACTTTGTAATCACTAGGGTAGCATATCGAGACAACTCCTCAAAGTATTACATCAATGACCGTTCAAGCAACTTTACTGAAGTTACCACGAAACTGAAAGGGAAAGGAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTGAAGTGGAGCAGATTTCACTCATGAAGCCAAAAGCTCAGGGATCTCAGGATGAAGGTTTCCTTGAGTACCTTGAGGACATTATTGGGACCAACAAATATATAGAAAAAATTGATGAATCTTATAAAAAGCTTGAGTCTCTCAATGAGAGAAGATCTGATGTCGTACAAATGGTGAAGCTGGCAGAGAAAGAAAGAGACAGCTTGGAGGATCGGAAGAATGAAGCAGAAACTTACATGCTGAAAGAGTTGTCACTTCTAAAGTGGCAAGAGAAAGCCACAAAATTGGCTCATAAAGATGCCTTTGCCAAAATGGTGGATCTGCAGGAAAATATAGCCAGCTTAGAAGAAAATCTGAACAATGATAGAGGGAAGATCCAGGAGCATAATAATGCACTGAAGCAGCTTGAATCTGTGTACGATAAACATATGAAACAGCAAGAGGAATTATATAATACCCTCAACAGCTATAAGGATGAATTTAAGCACCTTGAAAGGGAGCGTGCAAAATACCTGGTGAATCTGCAATTTGTGGAGCAGAAGATCAAGAAACTCGGTGAAAAACTTGAAAAGGTTTCATCATCGATTAATGACAGAGAGAGGGACTGTGAGAACTCGACTAATCAGATCCCAGAACTTGAGAAAAGTATTCCCCAACTGCGAAAACTCTTGTTGGATGAAGAAAAAGTCCTGGAGGAAATTATTGAGGATTCCAAAGGGGATACTGAAACATATCGCTGTGAGCTTACAATGGTTCGTTCCAGATTAGAACCTTGGGAAAAACAACTGATTGAGCACCGGAAGAAATTTGATGTGGCATATGCTGAACACAAACTTTTAGATGAAAAGCATCAAGCTGGCCGTGCAGCTTTTGAAGACACTCGTAAGCAGATGGATGATATATTGGGAATGATACAAACAAACACTGCAGACATTACAAAAATGCGGTGTGAACTAGAAAAGAGCGAGTTTGAAAGGACGAAGTATCGTAAAGCAGAACAAGAATATATCAAAGAACAAGAAGCTCTCATACCTTGTGAACAAGCTGCAAGACAGAAGGTTGCAGAACTCAAGCATCTTCTGGATTCCGAAAAGAGTAGGGGAAAACTTTTGAAAGCAATTTTACATGCTAAGTTGTCCAACCAGATACCGGGAATACATGGTCGACTGGGAGATTTAGGTGCTATTGATGAGCAATATGATGTTGCCATATCATCAGCTTGCCCCGGACTTGATAATATTGTGGTGGAAACAACTGCTGGAGCAATAGCTTGTGTTGAGCTACTTCGAAGAGAGAATCTTGGTGTTGCTAATTTCATGATAATGGAAAAGATAACTGATTGTCTACCAGTGAGGAAGGAGGATGTAAGAACGCCAGAAGGAGTTCCACGCCTTTTCGATCTAGTTAGGGTTGAGGACCAGAGAATGAAATTTGCTTTCTTTGCAGCATTGAAGAATACCGTTGTAGCTAAAGATCTGGATCAGGCAGCACGTATTGCATATGGAGGAAACCCCAAATTTCGGGTGGTCACACTTGATGGTGCACTATTTGAAATATCTGGTACAATGAGTGGTGGTGGAAGTAAGCAATGTGGTGGTAAAATTGGCAGATCGATATGTACTGCTGTAGTGTCAGAAGAAGCTGTTACAGATGCCAGCAGGGAGCTTGCCATTATGGCTGAAAAATTAAACTCTATCAGCCAACATATTGCTGATGCAGCAAAGAGATACCAAGCCTCTGAAGATGCAATTGCACACTGGGTGTTGGAATTAGCTAAAAGCCAGAAAGAGATTGAGAGTTTGAGTTCACAATATAGTTATCTTGAAAAGCAAATTGGTTCCTTGGAGGCTGCATCACAACCGAAGAAGAATGAGCTTGATCAGCTAAGAAAACTTGATAATATTATTTCTGCTGAAGGAATTAAGATTGAAGAACTCATCCAAGGATCTAAGCAGCTTAAGGAAAAGGCTCTGGAGCTTCAGTGTAACATAGAAAATGCTGGTGGTGAAAGATTAAAAGTACAGAAGTCAAAGGTCGATAAGATTAAGGCTGATGTTGATGAAAAGAACAGTGAAATTAACCACCAAAAAGTCCAGATTGAGACAGGCCAGAAAACTATAAAGGAGTTGAGAAAAGTGATTCAAGATTCAAAGAGGAAGAAAGAACGACATGACAAGGAGAAAGAAACGTTATGTGCCAACTTTAAAGAAAAAGAAGAGAAGGCATCTCTAGTTCAAGAGAACTACGAGGAAACACAGAAGCTGATTGATAAAGATAAAGATGTGTTGGAAAAAGCAAAATCTGAGTATTGCAATATGAAAAAGACTGTATATGAATTGCGGTCACAGAAGGATAATGCTGAGTTTGAACTAGAAGATATGAAGAGGAGATACAAGGATCTGAAATTTGAGGGGAAGGCTTACAAGGACAAGCTTGATAAGTTGCAAGCTTCCCTTACAAAGCATATGAATCAAATTCAGAAAGATTTAGTTGATTCTGAAAAGATTCAAGCAACCTTGGCAGATGAACATCTTAATAGTTGTTGCGACCTTAAAAGGGCTATTGGAACTGCAGCACTTCTAGAAGCACAAATGAGAGAGATGAATCCAAATCTTGATTCAATCTCAGAGTACCAAAGGAAGGTCTCATTGTATAATGAAAGAGTGGAGGATCTGAGTGTTGTCACAAAACAGCGTGATGACATAAAGAGGCAGTATGATGAATTCAGAAAGAAGAGGTTGGATGACTTCATGGCAGGATTTAATGCAATATCTTTGAAGTTAAAGGAAATGTACCAGATGATCACACTGGGAGGTGATGCGGAACTTGAGCTAGTCGACTCCTTGGATCCTTTCTCTGAAGGTGTTGTCTTCAGCGTTAGACCACCAAAGAAGAGTTGGAAGAATATTTCAAACTTATCTGGTGGTGAAAAGACATTGAGCTCATTGGCTCTTGTGTTTGCACTTCATCATTACAAGCCTACACCTCTTTATGTCATGGATGAAATTGATGCTGCCTTAGACTTTAAGAATGTTTCCATCGTTGGTCATTATGTGAAGGACCGGACAAAGGATGCTCAGTTCATAATCATAAGCCTGAGAAATAACATGTTTGAGTTGGCTGATCGACTTGTGGGGATATACAAAACTCACAATTGCACGAAGAGCATTACCATTAATCCAGGGAGTTTTGTGATCTGCAATCAAGCTGCTCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1241

Amino Acids

141.56

Weight (kDa)

6.07

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_hinge	PF06470	155 - 271	3e-20	SMC proteins Flexible Hinge Domain
SMC_N	PF02463	413 - 826	1.1e-30	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccI	GTMKAC	3 cut(s)	1666, 1846, 3339
AccII	CGCG	1 cut(s)	114
AciI	CCGC	3 cut(s)	1447, 2842, 3323
AclI	AACGTT	1 cut(s)	2690
AcoI	YGGCCR	1 cut(s)	1360
AcsI	RAATTY	7 cut(s)	980, 1307, 1931, 2018, 2906, 2976, 3224
AcuI	CTGAAG	8 cut(s)	456, 482, 920, 2262, 2436, 2465, 3358, 3381
AcyI	GRCGYC	1 cut(s)	11
AdeI	CACNNNGTG	1 cut(s)	2263
AfaI	GTAC	8 cut(s)	572, 669, 920, 2065, 2122, 2523, 3134, 3296
AfiI	CCNNNNNNNGG	7 cut(s)	277, 997, 1651, 2022, 3058, 3142, 3571
AflII	CTTAAG	1 cut(s)	2459
AflIII	ACRYGT	2 cut(s)	112, 3609
AjnI	CCWGG	7 cut(s)	306, 349, 471, 879, 1014, 1191, 3682
AjuI	GAANNNNNNNTTGG	6 cut(s)	99, 131, 2319, 2351, 3103, 3135
AloI	GAACNNNNNNTCC	4 cut(s)	282, 314, 3566, 3598
Alw21I	GWGCWC	4 cut(s)	249, 1299, 2047, 3446
Alw26I	GTCTC	5 cut(s)	381, 645, 693, 2597, 3151
Alw44I	GTGCAC	1 cut(s)	2043
AlwNI	CAGNNNCTG	1 cut(s)	2764
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	2 cut(s)	1360, 2608
ApaLI	GTGCAC	1 cut(s)	2043
ApoI	RAATTY	7 cut(s)	980, 1307, 1931, 2018, 2906, 2976, 3224
AseI	ATTAAT	2 cut(s)	1089, 3678
Asp700I	GAANNNNTTC	3 cut(s)	345, 1884, 3006
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	5 cut(s)	119, 152, 591, 1918, 3562
AsuC2I	CCSGG	2 cut(s)	1653, 1728
AsuHPI	GGTGA	8 cut(s)	116, 515, 688, 1030, 1070, 2519, 3329, 3440
AsuII	TTCGAA	1 cut(s)	1789
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
BaeGI	GKGCMC	1 cut(s)	2047
BamHI	GGATCC	1 cut(s)	3349
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	3 cut(s)	44, 249, 3446
BarI	GAAGNNNNNNTAC	4 cut(s)	1515, 1547, 2876, 2908
BbsI	GAAGAC	2 cut(s)	1383, 3364
Bbv12I	GWGCWC	4 cut(s)	249, 1299, 2047, 3446
BccI	CCATC	4 cut(s)	323, 1387, 2033, 3548
BceAI	ACGGC	2 cut(s)	49, 1347
BciT130I	CCWGG	7 cut(s)	308, 351, 473, 881, 1016, 1193, 3684
BciVI	GTATCC	1 cut(s)	1216
BclI	TGATCA	2 cut(s)	2380, 3303
BcnI	CCSGG	2 cut(s)	1653, 1728
BcoDI	GTCTC	5 cut(s)	381, 645, 693, 2597, 3151
BfaI	CTAG	7 cut(s)	372, 1457, 1904, 2732, 2873, 3083, 3335
BfmI	CTRYAG	4 cut(s)	824, 1428, 2127, 3072
BfoI	RGCGCY	1 cut(s)	14
BfrI	CTTAAG	1 cut(s)	2459
BfuI	GTATCC	1 cut(s)	1216
BglI	GCCNNNNNGGC	1 cut(s)	2177
BglII	AGATCT	2 cut(s)	656, 1975
BlpI	GCTNAGC	1 cut(s)	216
Bme1390I	CCNGG	9 cut(s)	308, 351, 473, 881, 1016, 1193, 1653, 1728, 3684
Bme18I	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	5 cut(s)	119, 152, 591, 1918, 3562
BmiI	GGNNCC	4 cut(s)	12, 592, 2341, 3351
BmrFI	CCNGG	9 cut(s)	308, 351, 473, 881, 1016, 1193, 1653, 1728, 3684
BmrI	ACTGGG	3 cut(s)	1679, 2269, 3320
BmuI	ACTGGG	3 cut(s)	1679, 2269, 3320
BpiI	GAAGAC	2 cut(s)	1383, 3364
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	3 cut(s)	1214, 1782, 2495
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	1789
BpuEI	CTTGAG	7 cut(s)	587, 596, 656, 1160, 1556, 3350, 3699
BpuMI	CCSGG	2 cut(s)	1653, 1728
Bsa29I	ATCGAT	2 cut(s)	1085, 2114
BsaAI	YACGTR	1 cut(s)	1994
BsaBI	GATNNNNATC	2 cut(s)	1980, 3030
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	3151
BsaJI	CCNNGG	8 cut(s)	53, 1274, 1726, 2343, 2443, 3018, 3345, 3683
BsaWI	WCCGGW	2 cut(s)	1299, 3564
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 2468, 2498
Bsc4I	CCNNNNNNNGG	7 cut(s)	277, 997, 1651, 2022, 3058, 3142, 3571
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	4 cut(s)	1674, 1850, 2264, 3315
Bse3DI	GCAATG	3 cut(s)	181, 195, 2096
Bse8I	GATNNNNATC	2 cut(s)	1980, 3030
BseBI	CCWGG	7 cut(s)	308, 351, 473, 881, 1016, 1193, 3684
BseCI	ATCGAT	2 cut(s)	1085, 2114
BseDI	CCNNGG	8 cut(s)	53, 1274, 1726, 2343, 2443, 3018, 3345, 3683
BseGI	GGATG	9 cut(s)	559, 982, 1183, 1402, 1870, 2439, 3250, 3508, 3580
BseJI	GATNNNNATC	2 cut(s)	1980, 3030
BseLI	CCNNNNNNNGG	7 cut(s)	277, 997, 1651, 2022, 3058, 3142, 3571
BseMI	GCAATG	3 cut(s)	181, 195, 2096
BseMII	CTCAG	8 cut(s)	554, 563, 2796, 2853, 3141, 3167, 3590, 3593
BseNI	ACTGG	4 cut(s)	1674, 1850, 2264, 3315
BseRI	GAGGAG	2 cut(s)	385, 2902
BseSI	GKGCMC	1 cut(s)	2047
BsgI	GTGCAG	1 cut(s)	1386
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	1362, 2610
BshNI	GGYRCC	1 cut(s)	10
BshVI	ATCGAT	2 cut(s)	1085, 2114
BsiHKAI	GWGCWC	4 cut(s)	249, 1299, 2047, 3446
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	7 cut(s)	14, 102, 288, 1300, 1652, 1728, 3565
BslFI	GGGAC	3 cut(s)	346, 604, 1118
BslI	CCNNNNNNNGG	7 cut(s)	277, 997, 1651, 2022, 3058, 3142, 3571
BsmAI	GTCTC	5 cut(s)	381, 645, 693, 2597, 3151
BsmFI	GGGAC	3 cut(s)	346, 604, 1118
BsnI	GGCC	2 cut(s)	1362, 2610
Bso31I	GGTCTC	1 cut(s)	3151
BsoBI	CYCGRG	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	1789
Bsp1286I	GDGCHC	5 cut(s)	44, 249, 1299, 2047, 3446
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	3 cut(s)	1447, 2842, 3323
BspANI	GGCC	2 cut(s)	1362, 2610
BspCNI	CTCAG	8 cut(s)	553, 562, 2797, 2854, 3140, 3168, 3591, 3592
BspDI	ATCGAT	2 cut(s)	1085, 2114
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	3 cut(s)	78, 525, 1818
BspLI	GGNNCC	4 cut(s)	12, 592, 2341, 3351
BspMAI	CTGCAG	3 cut(s)	828, 1432, 3076
BspQI	GCTCTTC	2 cut(s)	164, 3659
BspT104I	TTCGAA	1 cut(s)	1789
BspT107I	GGYRCC	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	2459
BspTNI	GGTCTC	1 cut(s)	3151
BsrDI	GCAATG	3 cut(s)	181, 195, 2096
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	4 cut(s)	1674, 1850, 2264, 3315
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	8 cut(s)	53, 1274, 1726, 2343, 2443, 3018, 3345, 3683
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	5 cut(s)	1274, 2343, 2443, 3018, 3345
Bst2UI	CCWGG	7 cut(s)	308, 351, 473, 881, 1016, 1193, 3684
Bst4CI	ACNGT	5 cut(s)	419, 1109, 1963, 2573, 2830
Bst6I	CTCTTC	7 cut(s)	164, 1786, 2712, 2879, 3230, 3389, 3659
BstACI	GRCGYC	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	2459
BstAPI	GCANNNNNTGC	1 cut(s)	1997
BstBAI	YACGTR	1 cut(s)	1994
BstBI	TTCGAA	1 cut(s)	1789
BstC8I	GCNNGC	9 cut(s)	213, 684, 841, 1005, 1360, 1723, 2158, 2169, 2949
BstF5I	GGATG	9 cut(s)	559, 982, 1183, 1402, 1870, 2439, 3250, 3508, 3580
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstMAI	GTCTC	5 cut(s)	381, 645, 693, 2597, 3151
BstNI	CCWGG	7 cut(s)	308, 351, 473, 881, 1016, 1193, 3684
BstNSI	RCATGY	3 cut(s)	742, 1631, 3613
BstSCI	CCNGG	9 cut(s)	306, 349, 471, 879, 1014, 1191, 1651, 1726, 3682
BstSFI	CTRYAG	4 cut(s)	824, 1428, 2127, 3072
BstSLI	GKGCMC	1 cut(s)	2047
BstUI	CGCG	1 cut(s)	114
BstV2I	GAAGAC	2 cut(s)	1383, 3364
BstXI	CCANNNNNNTGG	2 cut(s)	787, 817
Bsu15I	ATCGAT	2 cut(s)	1085, 2114
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	2 cut(s)	1362, 2610
BsuTUI	ATCGAT	2 cut(s)	1085, 2114
BtsCI	GGATG	9 cut(s)	559, 982, 1183, 1402, 1870, 2439, 3250, 3508, 3580
BtsI	GCAGTG	1 cut(s)	1425
BtsIMutI	CAGTG	7 cut(s)	896, 1425, 1857, 2257, 2489, 2578, 3308
Cac8I	GCNNGC	9 cut(s)	213, 684, 841, 1005, 1360, 1723, 2158, 2169, 2949
CaiI	CAGNNNCTG	1 cut(s)	2764
CciI	TCATGA	3 cut(s)	78, 525, 1818
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	5 cut(s)	119, 152, 591, 1918, 3562
ClaI	ATCGAT	2 cut(s)	1085, 2114
CsiI	ACCWGGT	1 cut(s)	1014
Csp6I	GTAC	8 cut(s)	571, 668, 919, 2064, 2121, 2522, 3133, 3295
CviQI	GTAC	8 cut(s)	571, 668, 919, 2064, 2121, 2522, 3133, 3295
DinI	GGCGCC	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	2707
DraIII	CACNNNGTG	1 cut(s)	2263
EaeI	YGGCCR	1 cut(s)	1360
Eam1104I	CTCTTC	7 cut(s)	164, 1786, 2712, 2879, 3230, 3389, 3659
EarI	CTCTTC	7 cut(s)	164, 1786, 2712, 2879, 3230, 3389, 3659
Ecl136II	GAGCTC	2 cut(s)	247, 3444
Eco130I	CCWWGG	5 cut(s)	1274, 2343, 2443, 3018, 3345
Eco24I	GRGCYC	3 cut(s)	44, 249, 3446
Eco31I	GGTCTC	1 cut(s)	3151
Eco47I	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
Eco53kI	GAGCTC	2 cut(s)	247, 3444
Eco57I	CTGAAG	8 cut(s)	456, 482, 920, 2262, 2436, 2465, 3358, 3381
Eco88I	CYCGRG	1 cut(s)	43
EcoICRI	GAGCTC	2 cut(s)	247, 3444
EcoRI	GAATTC	1 cut(s)	3224
EcoRII	CCWGG	7 cut(s)	306, 349, 471, 879, 1014, 1191, 3682
EcoT14I	CCWWGG	5 cut(s)	1274, 2343, 2443, 3018, 3345
EcoT38I	GRGCYC	3 cut(s)	44, 249, 3446
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	5 cut(s)	1274, 2343, 2443, 3018, 3345
FalI	AAGNNNNNCTT	4 cut(s)	549, 581, 2940, 2972
FaqI	GGGAC	3 cut(s)	346, 604, 1118
FauNDI	CATATG	4 cut(s)	930, 1321, 2002, 2967
FbaI	TGATCA	2 cut(s)	2380, 3303
FblI	GTMKAC	3 cut(s)	1666, 1846, 3339
FokI	GGATG	9 cut(s)	566, 989, 1190, 1409, 1877, 2426, 3257, 3515, 3587
FriOI	GRGCYC	3 cut(s)	44, 249, 3446
FspBI	CTAG	7 cut(s)	372, 1457, 1904, 2732, 2873, 3083, 3335
GlaI	GCGC	1 cut(s)	12
GsuI	CTGGAG	3 cut(s)	1214, 1782, 2495
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	1362, 2610
HapII	CCGG	7 cut(s)	14, 102, 288, 1300, 1652, 1728, 3565
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	3 cut(s)	469, 1667, 3340
HindII	GTYRAC	3 cut(s)	469, 1667, 3340
HindIII	AAGCTT	3 cut(s)	632, 2933, 2949
HpaII	CCGG	7 cut(s)	14, 102, 288, 1300, 1652, 1728, 3565
HphI	GGTGA	8 cut(s)	116, 515, 688, 1030, 1070, 2519, 3329, 3440
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4III	ACNGT	5 cut(s)	419, 1109, 1963, 2573, 2830
HpyCH4IV	ACGT	3 cut(s)	335, 1993, 2690
HpySE526I	ACGT	3 cut(s)	335, 1993, 2690
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
Ksp22I	TGATCA	2 cut(s)	2380, 3303
LguI	GCTCTTC	2 cut(s)	164, 3659
LmnI	GCTCC	8 cut(s)	244, 511, 883, 1000, 1036, 1763, 2164, 2476
MabI	ACCWGGT	1 cut(s)	1014
MaeI	CTAG	7 cut(s)	372, 1457, 1904, 2732, 2873, 3083, 3335
MaeII	ACGT	3 cut(s)	335, 1993, 2690
MaeIII	GTNAC	8 cut(s)	356, 439, 753, 2029, 2146, 2486, 2844, 3184
MfeI	CAATTG	2 cut(s)	2250, 3655
MhlI	GDGCHC	5 cut(s)	44, 249, 1299, 2047, 3446
MluI	ACGCGT	1 cut(s)	112
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	647, 3335
MmeI	TCCRAC	7 cut(s)	130, 1155, 1665, 2247, 2769, 3222, 3380
MroXI	GAANNNNTTC	3 cut(s)	345, 1884, 3006
MslI	CAYNNNNRTG	3 cut(s)	798, 891, 1823
MspCI	CTTAAG	1 cut(s)	2459
MspI	CCGG	7 cut(s)	14, 102, 288, 1300, 1652, 1728, 3565
MspR9I	CCNGG	9 cut(s)	308, 351, 473, 881, 1016, 1193, 1653, 1728, 3684
MunI	CAATTG	2 cut(s)	2250, 3655
MvaI	CCWGG	7 cut(s)	308, 351, 473, 881, 1016, 1193, 3684
MvnI	CGCG	1 cut(s)	114
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	1653, 1728
NdeI	CATATG	4 cut(s)	930, 1321, 2002, 2967
NlaIV	GGNNCC	4 cut(s)	12, 592, 2341, 3351
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	5 cut(s)	356, 753, 2029, 2844, 3184
NspI	RCATGY	3 cut(s)	742, 1631, 3613
NspV	TTCGAA	1 cut(s)	1789
PaeR7I	CTCGAG	1 cut(s)	43
PagI	TCATGA	3 cut(s)	78, 525, 1818
PciI	ACATGT	1 cut(s)	3609
PciSI	GCTCTTC	2 cut(s)	164, 3659
PdmI	GAANNNNTTC	3 cut(s)	345, 1884, 3006
PflMI	CCANNNNNTGG	1 cut(s)	277
PfoI	TCCNGGA	4 cut(s)	306, 349, 879, 1191
PleI	GAGTC	2 cut(s)	646, 3335
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	2 cut(s)	646, 3335
Ppu21I	YACGTR	1 cut(s)	1994
PscI	ACATGT	1 cut(s)	3609
PshBI	ATTAAT	2 cut(s)	1089, 3678
PsiI	TTATAA	1 cut(s)	627
Psp124BI	GAGCTC	2 cut(s)	249, 3446
Psp1406I	AACGTT	1 cut(s)	2690
Psp6I	CCWGG	7 cut(s)	306, 349, 471, 879, 1014, 1191, 3682
PspGI	CCWGG	7 cut(s)	306, 349, 471, 879, 1014, 1191, 3682
PspN4I	GGNNCC	4 cut(s)	12, 592, 2341, 3351
PspPI	GGNCC	5 cut(s)	119, 152, 591, 1918, 3562
PspXI	VCTCGAGB	1 cut(s)	43
PstI	CTGCAG	3 cut(s)	828, 1432, 3076
PstNI	CAGNNNCTG	1 cut(s)	2764
RsaI	GTAC	8 cut(s)	572, 669, 920, 2065, 2122, 2523, 3134, 3296
RsaNI	GTAC	8 cut(s)	571, 668, 919, 2064, 2121, 2522, 3133, 3295
RseI	CAYNNNNRTG	3 cut(s)	798, 891, 1823
SacI	GAGCTC	2 cut(s)	249, 3446
SalI	GTCGAC	2 cut(s)	1665, 3338
SapI	GCTCTTC	2 cut(s)	164, 3659
Sau96I	GGNCC	5 cut(s)	119, 152, 591, 1918, 3562
SchI	GAGTC	2 cut(s)	647, 3335
ScrFI	CCNGG	9 cut(s)	308, 351, 473, 881, 1016, 1193, 1653, 1728, 3684
SduI	GDGCHC	5 cut(s)	44, 249, 1299, 2047, 3446
SexAI	ACCWGGT	1 cut(s)	1014
SfcI	CTRYAG	4 cut(s)	824, 1428, 2127, 3072
SfoI	GGCGCC	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	1789
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
SlaI	CTCGAG	1 cut(s)	43
SmiMI	CAYNNNNRTG	3 cut(s)	798, 891, 1823
SmlI	CTYRAG	9 cut(s)	43, 566, 575, 635, 1139, 1571, 2459, 3329, 3714
SmoI	CTYRAG	9 cut(s)	43, 566, 575, 635, 1139, 1571, 2459, 3329, 3714
SsiI	CCGC	3 cut(s)	1447, 2842, 3323
SspDI	GGCGCC	1 cut(s)	10
SspI	AATATT	3 cut(s)	1741, 2404, 3409
SspMI	CTAG	7 cut(s)	372, 1457, 1904, 2732, 2873, 3083, 3335
SstI	GAGCTC	2 cut(s)	249, 3446
StyD4I	CCNGG	9 cut(s)	306, 349, 471, 879, 1014, 1191, 1651, 1726, 3682
StyI	CCWWGG	5 cut(s)	1274, 2343, 2443, 3018, 3345
TaaI	ACNGT	5 cut(s)	419, 1109, 1963, 2573, 2830
TaiI	ACGT	3 cut(s)	338, 1996, 2693
TatI	WGTACW	2 cut(s)	2120, 2521
TscAI	CASTG	7 cut(s)	903, 1432, 1857, 2264, 2489, 2578, 3315
TseFI	GTSAC	5 cut(s)	356, 753, 2029, 2844, 3184
Tsp45I	GTSAC	5 cut(s)	356, 753, 2029, 2844, 3184
TspRI	CASTG	7 cut(s)	903, 1432, 1857, 2264, 2489, 2578, 3315
Van91I	CCANNNNNTGG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	2459
VneI	GTGCAC	1 cut(s)	2043
VpaK11BI	GGWCC	5 cut(s)	119, 152, 591, 1918, 3562
VspI	ATTAAT	2 cut(s)	1089, 3678
XapI	RAATTY	7 cut(s)	980, 1307, 1931, 2018, 2906, 2976, 3224
XbaI	TCTAGA	1 cut(s)	3082
XceI	RCATGY	3 cut(s)	742, 1631, 3613
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2023, 3396
XhoI	CTCGAG	1 cut(s)	43
XmiI	GTMKAC	3 cut(s)	1666, 1846, 3339
XmnI	GAANNNNTTC	3 cut(s)	345, 1884, 3006
XspI	CTAG	7 cut(s)	372, 1457, 1904, 2732, 2873, 3083, 3335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.