Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Forward (+)

22369309 .. 22378077

Gene Structure 8769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3660 bp

ATGGAATCGCCGCCGGACGAGTTCATGGCCGATGGCTCGGACTCCAGAAAGCCGAGGCTGTTCATCAGGGAAATGGTTTTGAGGAACTTCAAGTCTTATGCCGGGGAACAGCGCGTTGGTCCTTTCCACAAGAGCTTTTCTGCTGTTGTTGGACCTAATGGGAGTGGGAAGAGCAACGTTATAGATGCAATGCTCTTTGTATTCGGAAAACGAGCTAAGCAGATGCGACTTAACAGAGTTTCGGAGCTCATTCATAGCTCCCCTAATTGCCAGAATATAGATAGTGCTGGAGTTTCTGTTCATTTCCAGGAGATCATGGATTTGGATGATGGGACGTTTGAAGCTGTTCCAGGAAGTGATTTTGTAATCACTAGGGTAGCGTATCGGGATAACTCCTCCAAGTATTACATCAATGATCGTTCAAGCAATTTCACTGAAGTTACCAAGAATCTGAAAGGGAAAGGAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTGAAGTTGAGCAGATCTCACTCATGAAGCCAAAAGCTCAAGGATCTCAGGATGAAGGCTTCCTCGAGTACCTTGAGGACATTATTGGGACCAGCAAATATGTCCAAAAAATTGATGAATCTTATCAAGAGCTAGAGTCCCTCAATGAGAAAAGATCTGGTGTCGTGCAAATGGTTAAGCTGGCAGAGAAAGAAAGAGATGGCTTGGAGGATGGGAAGAATGAAGCGGAAACTTACATGCTGAAAGAGTTGTCACTTCTAAAGTGGCAAGAGAAAGCCACAAAACTGGCTCATGAAGATACCTCTGCCAAAATGCTTGATCTGCAGGAAAATACAACCAGCTTAGAAGAAAATCTGAACAACGATAGGGAGAAGATCCAGGAGCGTAATAGTGCACTGAAGGAGCTTGAATCTGCGTACGATAAGCATATGAAACAACAAGAGGAATTATATATCGCCCTCAACAGATATAAGGATGAATTTAAGCATCTTGAAAAGGAGCGTGCAAAATATCTGGTGAATCTGCAATATGTGGAGCAGAAGATCAAGAAACTCGATGAAAAACTTGAAAAGGATTCATTAAAGATTAGTGACAGAGAGAGGGACTGTGAGAACTCGATTAGTCAGATCCCAGAACTTGAGAAAAGTATTCGCCAACTGCAAAAACTCTTGTTGGATGAAGAAAAAGTCCTGGAGGAAATTATTGAGGATTCCAAAGGGGATACCGAAACATATTGCTGTGAGCTTACAACAGTTCGTTCCAGATTAGAACCTTGGGAAAAACAACTGATTGAGCACCGGAAGAAATTTGATGTTGCATATACTGAACGCAAGCTTTTGGATGAAAAGCATCAAGCTGGTCGTGCAGCTTTTGAAGACGCTCAAAAGCAGATGGATGATATATGGGGACTGATACAAATAAAAACTGCAGACATTACAAAAATTCGGAGTGAGCTAGAAAAGAGCAAGTTCGAAAGGACGGAATACCGTAAAGCCGAACAGGAATACATCAAAGAACAAGAAGTTCTCATACCTTGTGAACAAGCTGCAAGACAGAAGGTTGCAGAACTCAAGCATCTTCTGGATTCTGAAAAGAAGCAATATGATGTTGCCATATCAACGGCTTGCCCTGGACTTGATAATATTGTGGTGGAAACAACTGATGGAGCAATAGCTTGTGTTGAGCTACTCCGAAGGGAGAATCTTGGTGTTGCTAATTTCAGGATAATGCTTGCAGTTTTATTCGTGAGTAGTGGAACTCTGACTTCATATACATTAATAACTCAGGAAAAGATCACTGATCGTTTACCAGTGAGGAAGGAGAATGTAAGAACTCCAGAAGGAGTTCCACGCCTTTTCGATCTAGTTAGGGTTGAGGACCAGAGAATGAAACTTGCTTTCTTTGAAGAATTGAAGAATACCCTTGTAGCTAAAGATCTAGATCAGGCAGCACGTATTGCATATGGAGGAAACCCCAGATTTCGAGCGGTAACACTTGATGGTGCACTATTTGAAATATCTGGTACTATGACTGGTGGTGGAAGTAAGCCACGTGGTGGTAAGATTGGCCGATCTATATGTACTGCTGTAGTGTCAGAAGAAGCTGTTACAGATGCCAGCAGGGAGCTTGCCAGCATGACTGATAAATTAAACCATATCCGCCAACATATTGCTGACGCAGCCAAGAGATATCAAGCCTCTGAAGATGCAATTGCACACTGGGAGTTGGAATTAGCTAAAAGCCAGAAAGAGATTGACAGTTTGAGTTCACAACATAGTTATCTTGAAATGCAAATTGGTTCCTTGGAGGCTGCATCACAGCCGAAGAAGGATGAGGTTGATAAGCTAAGAAAACTCGATAGTATCATTTCTGCTGAAGGAAATAAGATCGACGAACTCATCCAAGGATCTAAGCAGCTTAAGGAAAAGGTCCGGGAGCTTCAGCATAACATAGAAAATGCTGGTGGTGAAAGTTTAAAAGTACAGAAGTCAAAGGTCAATAAGATTAAGTCCGATATTGATGAAAAGAACACTGAACTCAACCACCACAAAGTCCAGATTGAGACTGGCCAGCAAACTATAAAGGAGTTGAGAAAAGCGATTCAAGATTCAAAGAAGAAGTGTGAACGACATAACAAGGAGAACGAAACGTTATGTGCCAATTTCAAAGAAAAGGAAGAGAAGGCATCTCTAGTTCAAGAGAACTACGAGGAAACACAGAAGCTGATTGATGAACATAAAGCTGTGTTGGATAAAGCAAAATCTGAGTATTGCAATATGAAAAAGACTGTGTATGAATTGCGGGCATGGAAGGATAAAGCTGAGTTTGAACTAGAAGCTATGAAGAAGAAATACAAGGATCTGAAATTTGAGTGGAAGGCTTACAAGGACAAGCTTGATAAGTTGCAAACTGCCCTTATAAAGCATATGGATCAAATTCAGAAAGATTTAGTGGAATCTGAAAAGGTTCAAGCAACCTTGGCAGATGAACATCTTAATAGTTGTTGCGACCTTAAAAGGGCCATTGAAACGGCAGCACTTCTAGAAGCACAAATGAAAGAGATGAATCCAAATCTTGATTCAATCTCAGAGTACCAGAGAAAGGTCTCATTGTATAACGAAAGAGTGGAGGATCTGAGTATTATCACAAAACAGCGTGATGACATAAAGAGGCAGTATGATGAATTGAGAAAGAAGAGGCATGTCACATTTTTCATAGGGGTCACTTTCCCTCTGATGATCACGCTGGGAGGTGACGCAGAACTTGAGCTAGTCGACTCCTTGGATCCTTTCTCTGAAGGTGTTGTCTTCAGCGTTAGACCACCAAAGAAGAGTTGGAAGAATATTTCAAACTTATCTGGTGGTGAAAAGACATTGAGCTCATTGGCTCTTGTGTTTGCACTGCATCATTACAAGCCTACACCTCTTTATGTGATGGATGAAATTGATGCTGCCTTAGACTTTAAGAATGTTTCCATCGTCGGTCATTACGTGAAGGACCAGACAAAGGATGCACAATTCATAATCATAAGCCTTAGAAATAACATGTTTGAGTTAGCGGATCGACTTGTGGGGATATACAAAACTCATAATCGCACTAAGAGTATTACCATTGACCCAAGGAGTTTTGTGATCTGCAATGAAGCTGCTCAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1219

Amino Acids

139.73

Weight (kDa)

5.84

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	21 - 1201	9.5e-66	RecF/RecN/SMC N terminal domain
AAA_15	PF13175	22 - 403	1.4e-06	AAA ATPase domain
SMC_hinge	PF06470	527 - 654	1.3e-10	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2921
AccB7I	CCANNNNNTGG	1 cut(s)	2057
AccBSI	CCGCTC	1 cut(s)	1988
AccI	GTMKAC	1 cut(s)	3276
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	11, 728, 1988, 2161, 2803, 3560
AclI	AACGTT	2 cut(s)	177, 2651
AcoI	YGGCCR	3 cut(s)	27, 2068, 2569
AcsI	RAATTY	5 cut(s)	980, 1307, 1443, 2867, 2937
AcuI	CTGAAG	8 cut(s)	456, 482, 920, 2223, 2397, 2426, 3295, 3318
AcvI	CACGTG	1 cut(s)	2054
AdeI	CACNNNGTG	1 cut(s)	2057
AfaI	GTAC	6 cut(s)	572, 920, 2026, 2083, 2484, 3095
AfiI	CCNNNNNNNGG	4 cut(s)	2057, 3019, 3103, 3508
AflII	CTTAAG	1 cut(s)	2420
AflIII	ACRYGT	1 cut(s)	3546
AjnI	CCWGG	6 cut(s)	306, 349, 471, 879, 1191, 1630
AjuI	GAANNNNNNNTTGG	6 cut(s)	99, 131, 2280, 2312, 3064, 3096
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
Alw21I	GWGCWC	5 cut(s)	249, 898, 1299, 2008, 3383
Alw26I	GTCTC	2 cut(s)	2558, 3112
Alw44I	GTGCAC	2 cut(s)	894, 2004
AlwNI	CAGNNNCTG	1 cut(s)	2725
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	5 cut(s)	27, 2068, 2569, 3021, 3654
ApaLI	GTGCAC	2 cut(s)	894, 2004
ApeKI	GCWGC	9 cut(s)	1367, 1547, 1949, 2180, 2312, 2416, 3035, 3452, 3647
ApoI	RAATTY	5 cut(s)	980, 1307, 1443, 2867, 2937
AseI	ATTAAT	1 cut(s)	1778
Asp700I	GAANNNNTTC	3 cut(s)	345, 1845, 2967
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	7 cut(s)	119, 152, 591, 1879, 2431, 3021, 3499
AsuC2I	CCSGG	2 cut(s)	103, 2435
AsuHPI	GGTGA	5 cut(s)	515, 1030, 2480, 3266, 3377
AsuII	TTCGAA	1 cut(s)	1473
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	6 cut(s)	119, 152, 591, 1879, 2431, 3499
BaeGI	GKGCMC	2 cut(s)	898, 2008
BalI	TGGCCA	1 cut(s)	2571
BamHI	GGATCC	1 cut(s)	3286
BanII	GRGCYC	2 cut(s)	249, 3383
BarI	GAAGNNNNNNTAC	4 cut(s)	1515, 1547, 2837, 2869
BbrPI	CACGTG	1 cut(s)	2054
BbsI	GAAGAC	2 cut(s)	1383, 3301
Bbv12I	GWGCWC	5 cut(s)	249, 898, 1299, 2008, 3383
BbvI	GCAGC	9 cut(s)	1379, 1534, 1961, 2192, 2299, 2428, 3047, 3439, 3634
BccI	CCATC	9 cut(s)	26, 323, 695, 707, 1387, 1658, 1994, 3430, 3485
BceAI	ACGGC	2 cut(s)	1638, 3048
BciT130I	CCWGG	6 cut(s)	308, 351, 473, 881, 1193, 1632
BciVI	GTATCC	1 cut(s)	1216
BclI	TGATCA	1 cut(s)	3240
BcnI	CCSGG	2 cut(s)	103, 2435
BcoDI	GTCTC	2 cut(s)	2558, 3112
BfaI	CTAG	9 cut(s)	372, 635, 1457, 1865, 1940, 2693, 2834, 3044, 3272
BfmI	CTRYAG	3 cut(s)	824, 1428, 2088
BfrI	CTTAAG	1 cut(s)	2420
BfuI	GTATCC	1 cut(s)	1216
BglII	AGATCT	3 cut(s)	516, 656, 1936
BlpI	GCTNAGC	1 cut(s)	216
Bme1390I	CCNGG	8 cut(s)	103, 308, 351, 473, 881, 1193, 1632, 2435
Bme18I	GGWCC	6 cut(s)	119, 152, 591, 1879, 2431, 3499
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	7 cut(s)	119, 152, 591, 1879, 2431, 3021, 3499
BmiI	GGNNCC	3 cut(s)	592, 2302, 3288
BmrFI	CCNGG	8 cut(s)	103, 308, 351, 473, 881, 1193, 1632, 2435
BmrI	ACTGGG	1 cut(s)	2230
BmuI	ACTGGG	1 cut(s)	2230
BpiI	GAAGAC	2 cut(s)	1383, 3301
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	4 cut(s)	28, 309, 1214, 1821
Bpu10I	CCTNAGC	1 cut(s)	3651
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	1473
BpuEI	CTTGAG	5 cut(s)	525, 596, 1160, 1556, 3287
BpuMI	CCSGG	2 cut(s)	103, 2435
BsaAI	YACGTR	3 cut(s)	1955, 2054, 3493
BsaBI	GATNNNNATC	2 cut(s)	1941, 2991
BsaI	GGTCTC	1 cut(s)	3112
BsaJI	CCNNGG	9 cut(s)	53, 102, 1274, 1630, 2304, 2404, 2979, 3282, 3620
BsaWI	WCCGGW	1 cut(s)	1299
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	4 cut(s)	2057, 3019, 3103, 3508
Bse1I	ACTGG	5 cut(s)	792, 1811, 2038, 2225, 2572
Bse3DI	GCAATG	2 cut(s)	195, 3646
Bse8I	GATNNNNATC	2 cut(s)	1941, 2991
BseBI	CCWGG	6 cut(s)	308, 351, 473, 881, 1193, 1632
BseDI	CCNNGG	9 cut(s)	53, 102, 1274, 1630, 2304, 2404, 2979, 3282, 3620
BseJI	GATNNNNATC	2 cut(s)	1941, 2991
BseLI	CCNNNNNNNGG	4 cut(s)	2057, 3019, 3103, 3508
BseMI	GCAATG	2 cut(s)	195, 3646
BseMII	CTCAG	6 cut(s)	563, 1799, 2757, 2814, 3102, 3128
BseNI	ACTGG	5 cut(s)	792, 1811, 2038, 2225, 2572
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	2 cut(s)	898, 2008
BseXI	GCAGC	9 cut(s)	1379, 1534, 1961, 2192, 2299, 2428, 3047, 3439, 3634
BseYI	CCCAGC	1 cut(s)	3247
BsgI	GTGCAG	1 cut(s)	1386
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	5 cut(s)	29, 2070, 2571, 3023, 3656
BsiHKAI	GWGCWC	5 cut(s)	249, 898, 1299, 2008, 3383
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	4 cut(s)	14, 102, 1300, 2434
BsiWI	CGTACG	1 cut(s)	918
BslFI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
BslI	CCNNNNNNNGG	4 cut(s)	2057, 3019, 3103, 3508
BsmAI	GTCTC	2 cut(s)	2558, 3112
BsmFI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
BsnI	GGCC	5 cut(s)	29, 2070, 2571, 3023, 3656
Bso31I	GGTCTC	1 cut(s)	3112
BsoBI	CYCGRG	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	1473
Bsp1286I	GDGCHC	5 cut(s)	249, 898, 1299, 2008, 3383
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	6 cut(s)	11, 728, 1988, 2161, 2803, 3560
BspANI	GGCC	5 cut(s)	29, 2070, 2571, 3023, 3656
BspCNI	CTCAG	6 cut(s)	562, 1798, 2758, 2815, 3101, 3129
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	2 cut(s)	525, 793
BspLI	GGNNCC	3 cut(s)	592, 2302, 3288
BspMAI	CTGCAG	2 cut(s)	828, 1432
BspQI	GCTCTTC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	1473
BspTI	CTTAAG	1 cut(s)	2420
BspTNI	GGTCTC	1 cut(s)	3112
BsrBI	CCGCTC	1 cut(s)	1988
BsrDI	GCAATG	2 cut(s)	195, 3646
BsrI	ACTGG	5 cut(s)	792, 1811, 2038, 2225, 2572
BssECI	CCNNGG	9 cut(s)	53, 102, 1274, 1630, 2304, 2404, 2979, 3282, 3620
BssT1I	CCWWGG	6 cut(s)	1274, 2304, 2404, 2979, 3282, 3620
Bst2UI	CCWGG	6 cut(s)	308, 351, 473, 881, 1193, 1632
Bst4CI	ACNGT	5 cut(s)	1109, 1255, 1490, 2261, 2791
Bst6I	CTCTTC	4 cut(s)	164, 2673, 3191, 3326
BstAFI	CTTAAG	1 cut(s)	2420
BstAPI	GCANNNNNTGC	1 cut(s)	1958
BstBAI	YACGTR	3 cut(s)	1955, 2054, 3493
BstBI	TTCGAA	1 cut(s)	1473
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	2558, 3112
BstMWI	GCNNNNNNNGC	6 cut(s)	823, 1364, 1958, 2180, 2981, 3653
BstNI	CCWGG	6 cut(s)	308, 351, 473, 881, 1193, 1632
BstNSI	RCATGY	3 cut(s)	742, 3206, 3550
BstSCI	CCNGG	8 cut(s)	101, 306, 349, 471, 879, 1191, 1630, 2433
BstSFI	CTRYAG	3 cut(s)	824, 1428, 2088
BstSLI	GKGCMC	2 cut(s)	898, 2008
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	9 cut(s)	1379, 1534, 1961, 2192, 2299, 2428, 3047, 3439, 3634
BstV2I	GAAGAC	2 cut(s)	1383, 3301
BstXI	CCANNNNNNTGG	1 cut(s)	787
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	5 cut(s)	29, 2070, 2571, 3023, 3656
BtsI	GCAGTG	1 cut(s)	3401
BtsIMutI	CAGTG	7 cut(s)	432, 896, 1797, 1818, 2218, 2532, 3401
CaiI	CAGNNNCTG	1 cut(s)	2725
CciI	TCATGA	2 cut(s)	525, 793
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	7 cut(s)	119, 152, 591, 1879, 2431, 3021, 3499
CseI	GACGC	3 cut(s)	1388, 2186, 3266
Csp6I	GTAC	6 cut(s)	571, 919, 2025, 2082, 2483, 3094
CviAII	CATG	9 cut(s)	25, 316, 526, 739, 794, 2137, 2808, 3203, 3547
CviQI	GTAC	6 cut(s)	571, 919, 2025, 2082, 2483, 3094
DraI	TTTAAA	1 cut(s)	2478
DraIII	CACNNNGTG	1 cut(s)	2057
EaeI	YGGCCR	3 cut(s)	27, 2068, 2569
Eam1104I	CTCTTC	4 cut(s)	164, 2673, 3191, 3326
EarI	CTCTTC	4 cut(s)	164, 2673, 3191, 3326
EciI	GGCGGA	1 cut(s)	2150
Ecl136II	GAGCTC	2 cut(s)	247, 3381
Eco130I	CCWWGG	6 cut(s)	1274, 2304, 2404, 2979, 3282, 3620
Eco147I	AGGCCT	1 cut(s)	3656
Eco24I	GRGCYC	2 cut(s)	249, 3383
Eco31I	GGTCTC	1 cut(s)	3112
Eco32I	GATATC	1 cut(s)	2192
Eco47I	GGWCC	6 cut(s)	119, 152, 591, 1879, 2431, 3499
Eco53kI	GAGCTC	2 cut(s)	247, 3381
Eco57I	CTGAAG	8 cut(s)	456, 482, 920, 2223, 2397, 2426, 3295, 3318
Eco72I	CACGTG	1 cut(s)	2054
Eco88I	CYCGRG	1 cut(s)	566
EcoICRI	GAGCTC	2 cut(s)	247, 3381
EcoRII	CCWGG	6 cut(s)	306, 349, 471, 879, 1191, 1630
EcoRV	GATATC	1 cut(s)	2192
EcoT14I	CCWWGG	6 cut(s)	1274, 2304, 2404, 2979, 3282, 3620
EcoT38I	GRGCYC	2 cut(s)	249, 3383
ErhI	CCWWGG	6 cut(s)	1274, 2304, 2404, 2979, 3282, 3620
FaeI	CATG	9 cut(s)	28, 319, 529, 742, 797, 2140, 2811, 3206, 3550
FaqI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
FatI	CATG	9 cut(s)	24, 315, 525, 738, 793, 2136, 2807, 3202, 3546
FauI	CCCGC	1 cut(s)	2796
FauNDI	CATATG	3 cut(s)	930, 1963, 2928
FbaI	TGATCA	1 cut(s)	3240
FblI	GTMKAC	1 cut(s)	3276
FriOI	GRGCYC	2 cut(s)	249, 3383
FspBI	CTAG	9 cut(s)	372, 635, 1457, 1865, 1940, 2693, 2834, 3044, 3272
GlaI	GCGC	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	3251
GsuI	CTGGAG	4 cut(s)	28, 309, 1214, 1821
HaeIII	GGCC	5 cut(s)	29, 2070, 2571, 3023, 3656
HapII	CCGG	4 cut(s)	14, 102, 1300, 2434
HgaI	GACGC	3 cut(s)	1388, 2186, 3266
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	9 cut(s)	28, 319, 529, 742, 797, 2140, 2811, 3206, 3550
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	469, 3277
HindII	GTYRAC	2 cut(s)	469, 3277
HindIII	AAGCTT	2 cut(s)	1334, 2894
HpaII	CCGG	4 cut(s)	14, 102, 1300, 2434
HphI	GGTGA	5 cut(s)	515, 1030, 2480, 3266, 3377
Hpy166II	GTNNAC	8 cut(s)	469, 896, 1541, 1808, 2006, 2270, 2627, 3277
Hpy8I	GTNNAC	8 cut(s)	469, 896, 1541, 1808, 2006, 2270, 2627, 3277
Hpy99I	CGWCG	2 cut(s)	2396, 3485
HpyCH4III	ACNGT	5 cut(s)	1109, 1255, 1490, 2261, 2791
HpyCH4IV	ACGT	6 cut(s)	177, 335, 1954, 2053, 2651, 3492
HpyF10VI	GCNNNNNNNGC	6 cut(s)	823, 1364, 1958, 2180, 2981, 3653
HpySE526I	ACGT	6 cut(s)	177, 335, 1954, 2053, 2651, 3492
Hsp92II	CATG	9 cut(s)	28, 319, 529, 742, 797, 2140, 2811, 3206, 3550
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	3240
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	9 cut(s)	244, 263, 883, 904, 1000, 1036, 1667, 2125, 2437
Lsp1109I	GCAGC	9 cut(s)	1379, 1534, 1961, 2192, 2299, 2428, 3047, 3439, 3634
MaeI	CTAG	9 cut(s)	372, 635, 1457, 1865, 1940, 2693, 2834, 3044, 3272
MaeII	ACGT	6 cut(s)	177, 335, 1954, 2053, 2651, 3492
MaeIII	GTNAC	8 cut(s)	439, 753, 1091, 1990, 2107, 3205, 3223, 3254
MbiI	CCGCTC	1 cut(s)	1988
MfeI	CAATTG	1 cut(s)	2211
MhlI	GDGCHC	5 cut(s)	249, 898, 1299, 2008, 3383
MlsI	TGGCCA	1 cut(s)	2571
MluNI	TGGCCA	1 cut(s)	2571
MlyI	GAGTC	3 cut(s)	35, 647, 3272
MmeI	TCCRAC	5 cut(s)	130, 1155, 2208, 2730, 3317
Mox20I	TGGCCA	1 cut(s)	2571
MroXI	GAANNNNTTC	3 cut(s)	345, 1845, 2967
MscI	TGGCCA	1 cut(s)	2571
Msp20I	TGGCCA	1 cut(s)	2571
MspCI	CTTAAG	1 cut(s)	2420
MspI	CCGG	4 cut(s)	14, 102, 1300, 2434
MspR9I	CCNGG	8 cut(s)	103, 308, 351, 473, 881, 1193, 1632, 2435
MunI	CAATTG	1 cut(s)	2211
MvaI	CCWGG	6 cut(s)	308, 351, 473, 881, 1193, 1632
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	6 cut(s)	823, 1364, 1958, 2180, 2981, 3653
NciI	CCSGG	2 cut(s)	103, 2435
NdeI	CATATG	3 cut(s)	930, 1963, 2928
NlaIII	CATG	9 cut(s)	28, 319, 529, 742, 797, 2140, 2811, 3206, 3550
NlaIV	GGNNCC	3 cut(s)	592, 2302, 3288
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	5 cut(s)	753, 1091, 3205, 3223, 3254
NspI	RCATGY	3 cut(s)	742, 3206, 3550
NspV	TTCGAA	1 cut(s)	1473
PaeR7I	CTCGAG	1 cut(s)	566
PagI	TCATGA	2 cut(s)	525, 793
PceI	AGGCCT	1 cut(s)	3656
PciI	ACATGT	1 cut(s)	3546
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	3489
PdmI	GAANNNNTTC	3 cut(s)	345, 1845, 2967
Pfl23II	CGTACG	1 cut(s)	918
PflMI	CCANNNNNTGG	1 cut(s)	2057
PfoI	TCCNGGA	5 cut(s)	306, 349, 879, 1191, 2433
PleI	GAGTC	3 cut(s)	35, 646, 3272
PmaCI	CACGTG	1 cut(s)	2054
PmlI	CACGTG	1 cut(s)	2054
PpsI	GAGTC	3 cut(s)	35, 646, 3272
Ppu21I	YACGTR	3 cut(s)	1955, 2054, 3493
PscI	ACATGT	1 cut(s)	3546
PshBI	ATTAAT	1 cut(s)	1778
PsiI	TTATAA	1 cut(s)	2921
Psp124BI	GAGCTC	2 cut(s)	249, 3383
Psp1406I	AACGTT	2 cut(s)	177, 2651
Psp6I	CCWGG	6 cut(s)	306, 349, 471, 879, 1191, 1630
PspCI	CACGTG	1 cut(s)	2054
PspFI	CCCAGC	1 cut(s)	3247
PspGI	CCWGG	6 cut(s)	306, 349, 471, 879, 1191, 1630
PspLI	CGTACG	1 cut(s)	918
PspN4I	GGNNCC	3 cut(s)	592, 2302, 3288
PspPI	GGNCC	7 cut(s)	119, 152, 591, 1879, 2431, 3021, 3499
PspXI	VCTCGAGB	1 cut(s)	566
PstI	CTGCAG	2 cut(s)	828, 1432
PstNI	CAGNNNCTG	1 cut(s)	2725
RsaI	GTAC	6 cut(s)	572, 920, 2026, 2083, 2484, 3095
RsaNI	GTAC	6 cut(s)	571, 919, 2025, 2082, 2483, 3094
SacI	GAGCTC	2 cut(s)	249, 3383
SalI	GTCGAC	1 cut(s)	3275
SapI	GCTCTTC	1 cut(s)	164
Sau96I	GGNCC	7 cut(s)	119, 152, 591, 1879, 2431, 3021, 3499
SchI	GAGTC	3 cut(s)	35, 647, 3272
ScrFI	CCNGG	8 cut(s)	103, 308, 351, 473, 881, 1193, 1632, 2435
SduI	GDGCHC	5 cut(s)	249, 898, 1299, 2008, 3383
SfcI	CTRYAG	3 cut(s)	824, 1428, 2088
Sfr274I	CTCGAG	1 cut(s)	566
SfuI	TTCGAA	1 cut(s)	1473
SinI	GGWCC	6 cut(s)	119, 152, 591, 1879, 2431, 3499
SlaI	CTCGAG	1 cut(s)	566
SmlI	CTYRAG	7 cut(s)	540, 566, 575, 1139, 1571, 2420, 3266
SmoI	CTYRAG	7 cut(s)	540, 566, 575, 1139, 1571, 2420, 3266
SseBI	AGGCCT	1 cut(s)	3656
SsiI	CCGC	6 cut(s)	11, 728, 1988, 2161, 2803, 3560
SspI	AATATT	2 cut(s)	1645, 3346
SspMI	CTAG	9 cut(s)	372, 635, 1457, 1865, 1940, 2693, 2834, 3044, 3272
SstI	GAGCTC	2 cut(s)	249, 3383
StuI	AGGCCT	1 cut(s)	3656
StyD4I	CCNGG	8 cut(s)	101, 306, 349, 471, 879, 1191, 1630, 2433
StyI	CCWWGG	6 cut(s)	1274, 2304, 2404, 2979, 3282, 3620
TaaI	ACNGT	5 cut(s)	1109, 1255, 1490, 2261, 2791
TaiI	ACGT	6 cut(s)	180, 338, 1957, 2056, 2654, 3495
TaqII	GACCGA	1 cut(s)	3473
TatI	WGTACW	2 cut(s)	2081, 2482
TauI	GCSGC	1 cut(s)	13
TscAI	CASTG	7 cut(s)	439, 903, 1804, 1818, 2225, 2539, 3408
TseFI	GTSAC	5 cut(s)	753, 1091, 3205, 3223, 3254
TseI	GCWGC	9 cut(s)	1367, 1547, 1949, 2180, 2312, 2416, 3035, 3452, 3647
Tsp45I	GTSAC	5 cut(s)	753, 1091, 3205, 3223, 3254
TspGWI	ACGGA	1 cut(s)	1496
TspRI	CASTG	7 cut(s)	439, 903, 1804, 1818, 2225, 2539, 3408
Van91I	CCANNNNNTGG	1 cut(s)	2057
Vha464I	CTTAAG	1 cut(s)	2420
VneI	GTGCAC	2 cut(s)	894, 2004
VpaK11BI	GGWCC	6 cut(s)	119, 152, 591, 1879, 2431, 3499
VspI	ATTAAT	1 cut(s)	1778
XapI	RAATTY	5 cut(s)	980, 1307, 1443, 2867, 2937
XbaI	TCTAGA	2 cut(s)	1939, 3043
XceI	RCATGY	3 cut(s)	742, 3206, 3550
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2564, 3333
XhoI	CTCGAG	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	3276
XmnI	GAANNNNTTC	3 cut(s)	345, 1845, 2967
XspI	CTAG	9 cut(s)	372, 635, 1457, 1865, 1940, 2693, 2834, 3044, 3272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.