Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

51798494 .. 51806608

Gene Structure 8115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG403700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3195 bp

ATGAAGCCAAAAGCTCAAGGATCTCAGGATGAAGGCCTCCTCGAGTACCTTGAGGACATTATTGGGACCAGCAAATATGTCGAAAAAATTGATGAATCTTATAAAGAGATAGAGTCCCTAAATGAGAAAAGATCTGGTGTCGTGCAAATGGTTAAGCTGGCAGAGAAAGAAAGAGATGGCTTGGAGGATGGGAAGAATGAAGCGGAAGCTTACATGCTGAAAGAGTTGTCCCTTCTAAATTGGCAAGAGAAAGCCACACAATTGGCTTATGAAGATACCTTTGCAAAAATGCTTGATCTGCAGGAAACTATAACCAGCTTCGAAGAAAATCTGAACAATGATAGGGAGAAGATCCAGGAGCGTCATAATGCAGTGAAGGAGCTTGAATCTGTGTACAATAAACATATGAAACAACAAGAGGAATTGTATAATACCCTCAACAGATATAAGGATGAATTTAAGCATCTTGAAAAGGAGCGTGCAAAATATCTGGTGAATCTGCAATATGTGGAGCAGAAGATCAAGAAACTCGATGAAAAACTTGAAAAGGATTCATTAAAGATTAATGACAGAGAGAGGGAATGTGAGAACTCGACTAATCAGATCCCAGAACTTGAGAAAAGTATTCCCCAACTGCGAAAACTCTTGTTGGATGAAGAAAAAGTCCTGGAGGAAATTATTGAGAATTCCAAAGGGGATACCGAAACATATCGCTGTGAGCTTACAACAGTTCGTTCCAGATTAGAACCTTGGGAAAAACAACTGATTGAGCACCAGAAGAAATTTGATGTTGCATATACTGAACAGAAGCTTTTGGATGAAAAGCATCAAGCTGGTCGTGCAGCTTTTGAAGACGCTCGAAAGCAGATGGATGATATATTGGGAATGATACAAACAAAAACTGCAGCCATTGCAAAAATTCGGTGTGAGCTAGAAAAGAGCAAATTCGAAAGGACGGAATACTGTAAAGCAGAACAGGAATACATCAAAGAACAAGAAGCTCTCATACCTTGTGAACAAGCTGCAAGACAGAAGGTTGCAGAACTCAAGCATCTTCTGGATTCTGAAAAGAGTAGGGGAAGAATTTTAAAAGCAATTTTACAGGCTAAGTTATTCAACCGGATACCGGGAATACATGGCCGACTGGGTGATTTAGGTGCCATTGATGAGCAATATGATGTTGCCATATCAACAGCTTGCCCTGGACTTGATTATATTGTGGTGGAAACAACTGGTGGAGCAATAGCTTGTGTTGAGCTACTCCGAAGAGAGCATCTTGGTGTTGCTAATTTCATGATAATGGAACAGATCAATGATTGTTTACCAGCGAGGAAGGAGAATGTAAGAACTCCAGAAGGAGTTCCACGCCTTTTCGATCTAGTTAGGGTTGAGGACCAGAGAATGAAACTTGCTTTCTTTGAGGCACTGAAGAATACTGTTGTAGCTAAAGATCTAGATCAGGCAGAACGTATTGCATATGGAGGAAACCCCAAATTTCCAGTGGTAACACTTGATGGTGCAGTATTTGAAATATCTGGTACTATGAGTGGTGGTGGAAGTAAGCCATGTGGTAGTAAGATTGGCCGATCTATATGTACTACTGTAGTGTCAGAAGAAGCTATTACAGATGCCAGCAGGGGGCTTGCCAGTATGGCTGATAAATTAAACGATATCCGCCAACATATTGCTGATGCAGCAAAGAGATATCAAGCCTCTGAAGATGCAATTGCACACTGGGAGTTGGAATTAGCTAAAAGCGAGAAAGAGATTGACAGTTTGAGTTCACAACATAGTTATCTTGAAAAGCAAATTGGTTCCTTGGAGGCTGCATCACAGCCAAAGAAGGATGAGCTTGATCAGCTAAAAAAACTTGATAGTATCATTTCTGCTGAAGGAAATAAGATCGACGAACTCATCCAAGGATCTAAGCAGCTTAAGGAAAAGGCCCTGGAGCTTCAGCATAAAATAGAAAATGCTGGTGGTGAAAGATTAAAAGTACAGAAGTCAAAGGTCGATAATATTAAGTCCGATATTGATGAAAAGAACACTGAAATCAACCACCACAAAGTCCAGATTGAGACTGGCCAGAAAACTATAAAGGAGTTGAGAAAAGTGATTCAAGATTCAAAGAAGAAGAAAGAACGACATGACAAGGAGAAGGAAACGTTATGTGAAAATTTCAAAGAAAAAGAAGAGAAGGCATCTCTAGTTCAAGAGAACTACGAGGAAACACAGAAGCTGATTGATAAACATAAAGACGTGTTGGATAAAGCAAAATCTGAGTATTGCAATATGAAAAAGACTCTGTATGAATTGCGGGCATGGAAGGATAAAGCTGAGTTTGAACTAGAAGATATGAAGAAGAAATACAAGGATCTGAAATTTGAGGGGAAGGCTTACAAGGTCAGGCTTGATAAGTTGCAAATTGCCCTTATAAAGCATATGGATCAAATTCATAAAGATTTAGTGGACTCCGAAAAGGTTCAAGCAACCTTGGCAGATGAGCATCTTAGTTGTTGCGACCTTAAAAGGGCCATTGAAATGGCAGCACTACTAGAAGCACAAATGAGAGAGATGAATCCAAATCTTGATTCAATCTCAGAGTACCAAAGAAAGGTCTTATTATATAACGAAAGAGTGGAGGATCTGAGTATTGTCACAAAACAGCGTGATGACATAAAGAGGCAGTATGATGAATTGAGAAAGAAGAGGTTGGATGACTTTATGGCAGGATTTAATGCAATATCTATGAAGTTAAAGGAAATGTATCAGATGATGACGCTGGGAGGTGATGCAGAACTTGAGCTAGTCGACTCCCTGGATCCTTTCTCCGAAGGTGTTGTCTTCAGCGTGAGACCACCAAAGAAGAGTTGGAAAAATATTTCAAACTTATCTGGTGGTGAAAAGACATTGAGCTCATTGGCTCTCGTGTTTGCACTGCATCATTACAAGCCTACGCCTCTTTATGTCATGGATGAAATTGATGCTGCCTTAGACTTTAAGAATGTCTCCATCGTTGGTCATTACGTGAAGGACCAGACAAAGGATGCACAGTTCATAATCGTAAGCCTTAGAAATAATATGTTTGAGCTAGCGGATCGACTTGTGGGGATATACAAAACTCATAATTGCACAAAGAGCATTACCATTAACCCAGGGAGTTTTGTGATCTGCAATCAAGCTGCTCGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1064

Amino Acids

122.25

Weight (kDa)

5.71

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_hinge	PF06470	376 - 492	1.6e-20	SMC proteins Flexible Hinge Domain
SMC_N	PF02463	633 - 1046	7.9e-29	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	102, 2435
AccB1I	GGYRCC	1 cut(s)	1157
AccI	GTMKAC	1 cut(s)	2811
AciI	CCGC	4 cut(s)	203, 1675, 2317, 3095
AclI	AACGTT	1 cut(s)	2165
AcoI	YGGCCR	3 cut(s)	1138, 1582, 2083
AcuI	CTGAAG	5 cut(s)	1448, 1737, 1911, 1940, 2830
AfaI	GTAC	6 cut(s)	47, 395, 1540, 1597, 1998, 2606
AfiI	CCNNNNNNNGG	5 cut(s)	1126, 1638, 2530, 2614, 3043
AflII	CTTAAG	1 cut(s)	1934
AflIII	ACRYGT	1 cut(s)	2259
AjiI	CACGTC	1 cut(s)	2260
AjnI	CCWGG	6 cut(s)	354, 666, 1201, 1947, 2817, 3154
AjuI	GAANNNNNNNTTGG	4 cut(s)	1794, 1826, 2575, 2607
AloI	GAACNNNNNNTCC	2 cut(s)	3038, 3070
Alw21I	GWGCWC	2 cut(s)	774, 2918
Alw26I	GTCTC	3 cut(s)	2072, 2848, 3013
AlwNI	CAGNNNCTG	1 cut(s)	2239
Ama87I	CYCGRG	2 cut(s)	41, 3186
AoxI	GGCC	6 cut(s)	34, 1138, 1582, 1944, 2083, 2532
ApeKI	GCWGC	9 cut(s)	842, 905, 1022, 1694, 1826, 1930, 2546, 2987, 3182
ArsI	GACNNNNNNTTYG	2 cut(s)	2826, 2858
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	2 cut(s)	1359, 2481
AspS9I	GGNCC	5 cut(s)	66, 1393, 1945, 2532, 3034
AsuC2I	CCSGG	1 cut(s)	1128
AsuHPI	GGTGA	5 cut(s)	505, 1160, 1994, 2801, 2912
AsuII	TTCGAA	2 cut(s)	321, 948
AsuNHI	GCTAGC	1 cut(s)	3091
AvaI	CYCGRG	2 cut(s)	41, 3186
AvaII	GGWCC	3 cut(s)	66, 1393, 3034
BalI	TGGCCA	1 cut(s)	2085
BamHI	GGATCC	1 cut(s)	2821
BanI	GGYRCC	1 cut(s)	1157
BanII	GRGCYC	1 cut(s)	2918
BarI	GAAGNNNNNNTAC	4 cut(s)	990, 1022, 2351, 2383
BauI	CACGAG	1 cut(s)	2927
BbsI	GAAGAC	2 cut(s)	858, 2836
Bbv12I	GWGCWC	2 cut(s)	774, 2918
BbvI	GCAGC	9 cut(s)	854, 917, 1009, 1706, 1813, 1942, 2558, 2974, 3169
BccI	CCATC	5 cut(s)	170, 182, 862, 1508, 3020
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	6 cut(s)	356, 668, 1203, 1949, 2819, 3156
BciVI	GTATCC	2 cut(s)	691, 1116
BclI	TGATCA	1 cut(s)	1855
BcnI	CCSGG	1 cut(s)	1128
BcoDI	GTCTC	3 cut(s)	2072, 2848, 3013
BfaI	CTAG	8 cut(s)	932, 1379, 1454, 2207, 2348, 2555, 2807, 3092
BfmI	CTRYAG	3 cut(s)	299, 903, 1602
BfrI	CTTAAG	1 cut(s)	1934
BfuI	GTATCC	2 cut(s)	691, 1116
BglI	GCCNNNNNGGC	1 cut(s)	1652
BglII	AGATCT	2 cut(s)	131, 1450
BisI	GCNGC	9 cut(s)	843, 906, 1023, 1695, 1827, 1931, 2547, 2988, 3183
BlsI	GCNGC	9 cut(s)	844, 907, 1024, 1696, 1828, 1932, 2548, 2989, 3184
Bme1390I	CCNGG	7 cut(s)	356, 668, 1128, 1203, 1949, 2819, 3156
Bme18I	GGWCC	3 cut(s)	66, 1393, 3034
BmeT110I	CYCGRG	2 cut(s)	41, 3186
BmgBI	CACGTC	1 cut(s)	2260
BmgT120I	GGNCC	5 cut(s)	66, 1393, 1945, 2532, 3034
BmiI	GGNNCC	4 cut(s)	67, 1159, 1816, 2823
BmrFI	CCNGG	7 cut(s)	356, 668, 1128, 1203, 1949, 2819, 3156
BmrI	ACTGGG	2 cut(s)	1154, 1744
BmtI	GCTAGC	1 cut(s)	3095
BmuI	ACTGGG	2 cut(s)	1154, 1744
BpiI	GAAGAC	2 cut(s)	858, 2836
BpmI	CTGGAG	3 cut(s)	689, 1335, 1970
Bpu14I	TTCGAA	2 cut(s)	321, 948
BpuEI	CTTGAG	4 cut(s)	71, 635, 1031, 2822
BpuMI	CCSGG	1 cut(s)	1128
BsaAI	YACGTR	1 cut(s)	3028
BsaBI	GATNNNNATC	2 cut(s)	1455, 2505
BsaI	GGTCTC	1 cut(s)	2848
BsaJI	CCNNGG	9 cut(s)	749, 1201, 1818, 1918, 1947, 2493, 2817, 3154, 3155
BsaWI	WCCGGW	1 cut(s)	1119
Bsc4I	CCNNNNNNNGG	5 cut(s)	1126, 1638, 2530, 2614, 3043
Bse1I	ACTGG	6 cut(s)	1149, 1237, 1499, 1647, 1739, 2086
Bse3DI	GCAATG	1 cut(s)	909
Bse8I	GATNNNNATC	2 cut(s)	1455, 2505
BseBI	CCWGG	6 cut(s)	356, 668, 1203, 1949, 2819, 3156
BseDI	CCNNGG	9 cut(s)	749, 1201, 1818, 1918, 1947, 2493, 2817, 3154, 3155
BseJI	GATNNNNATC	2 cut(s)	1455, 2505
BseLI	CCNNNNNNNGG	5 cut(s)	1126, 1638, 2530, 2614, 3043
BseMI	GCAATG	1 cut(s)	909
BseMII	CTCAG	5 cut(s)	38, 2271, 2328, 2613, 2639
BseNI	ACTGG	6 cut(s)	1149, 1237, 1499, 1647, 1739, 2086
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	9 cut(s)	854, 917, 1009, 1706, 1813, 1942, 2558, 2974, 3169
BseYI	CCCAGC	1 cut(s)	2782
BsgI	GTGCAG	2 cut(s)	861, 1539
BshFI	GGCC	6 cut(s)	36, 1140, 1584, 1946, 2085, 2534
BshNI	GGYRCC	1 cut(s)	1157
BsiHKAI	GWGCWC	2 cut(s)	774, 2918
BsiHKCI	CYCGRG	2 cut(s)	41, 3186
BsiSI	CCGG	2 cut(s)	1120, 1127
BslFI	GGGAC	3 cut(s)	79, 100, 214
BslI	CCNNNNNNNGG	5 cut(s)	1126, 1638, 2530, 2614, 3043
BsmAI	GTCTC	3 cut(s)	2072, 2848, 3013
BsmFI	GGGAC	3 cut(s)	79, 100, 214
BsnI	GGCC	6 cut(s)	36, 1140, 1584, 1946, 2085, 2534
Bso31I	GGTCTC	1 cut(s)	2848
BsoBI	CYCGRG	2 cut(s)	41, 3186
Bsp119I	TTCGAA	2 cut(s)	321, 948
Bsp1286I	GDGCHC	2 cut(s)	774, 2918
Bsp1407I	TGTACA	1 cut(s)	393
BspACI	CCGC	4 cut(s)	203, 1675, 2317, 3095
BspANI	GGCC	6 cut(s)	36, 1140, 1584, 1946, 2085, 2534
BspCNI	CTCAG	5 cut(s)	37, 2272, 2329, 2612, 2640
BspHI	TCATGA	1 cut(s)	1293
BspLI	GGNNCC	4 cut(s)	67, 1159, 1816, 2823
BspMAI	CTGCAG	2 cut(s)	303, 907
BspOI	GCTAGC	1 cut(s)	3095
BspT104I	TTCGAA	2 cut(s)	321, 948
BspT107I	GGYRCC	1 cut(s)	1157
BspTI	CTTAAG	1 cut(s)	1934
BspTNI	GGTCTC	1 cut(s)	2848
BsrDI	GCAATG	1 cut(s)	909
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	6 cut(s)	1149, 1237, 1499, 1647, 1739, 2086
BssECI	CCNNGG	9 cut(s)	749, 1201, 1818, 1918, 1947, 2493, 2817, 3154, 3155
BssSI	CACGAG	1 cut(s)	2927
BssT1I	CCWWGG	4 cut(s)	749, 1818, 1918, 2493
Bst2BI	CACGAG	1 cut(s)	2927
Bst2UI	CCWGG	6 cut(s)	356, 668, 1203, 1949, 2819, 3156
Bst4CI	ACNGT	6 cut(s)	730, 965, 1438, 1603, 1775, 3054
Bst6I	CTCTTC	4 cut(s)	1261, 2187, 2702, 2861
BstAFI	CTTAAG	1 cut(s)	1934
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstAUI	TGTACA	1 cut(s)	393
BstBAI	YACGTR	1 cut(s)	3028
BstBI	TTCGAA	2 cut(s)	321, 948
BstC8I	GCNNGC	7 cut(s)	159, 480, 1198, 1633, 1644, 2319, 3093
BstMAI	GTCTC	3 cut(s)	2072, 2848, 3013
BstMWI	GCNNNNNNNGC	8 cut(s)	298, 839, 911, 1652, 1694, 1858, 2495, 3138
BstNI	CCWGG	6 cut(s)	356, 668, 1203, 1949, 2819, 3156
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	7 cut(s)	354, 666, 1126, 1201, 1947, 2817, 3154
BstSFI	CTRYAG	3 cut(s)	299, 903, 1602
BstV1I	GCAGC	9 cut(s)	854, 917, 1009, 1706, 1813, 1942, 2558, 2974, 3169
BstV2I	GAAGAC	2 cut(s)	858, 2836
BstX2I	RGATCY	9 cut(s)	20, 131, 351, 603, 1450, 1922, 2374, 2644, 2821
BstXI	CCANNNNNNTGG	2 cut(s)	262, 2542
BstYI	RGATCY	9 cut(s)	20, 131, 351, 603, 1450, 1922, 2374, 2644, 2821
BsuI	GTATCC	2 cut(s)	691, 1116
BsuRI	GGCC	6 cut(s)	36, 1140, 1584, 1946, 2085, 2534
BtrI	CACGTC	1 cut(s)	2260
BtsI	GCAGTG	2 cut(s)	378, 2936
BtsIMutI	CAGTG	6 cut(s)	378, 1424, 1506, 1732, 2046, 2936
Cac8I	GCNNGC	7 cut(s)	159, 480, 1198, 1633, 1644, 2319, 3093
CaiI	CAGNNNCTG	1 cut(s)	2239
CciI	TCATGA	1 cut(s)	1293
Cfr13I	GGNCC	5 cut(s)	66, 1393, 1945, 2532, 3034
CseI	GACGC	3 cut(s)	350, 863, 2788
Csp6I	GTAC	6 cut(s)	46, 394, 1539, 1596, 1997, 2605
CviAII	CATG	7 cut(s)	214, 1136, 1294, 1566, 2147, 2322, 2971
CviQI	GTAC	6 cut(s)	46, 394, 1539, 1596, 1997, 2605
DraI	TTTAAA	1 cut(s)	1089
EaeI	YGGCCR	3 cut(s)	1138, 1582, 2083
Eam1104I	CTCTTC	4 cut(s)	1261, 2187, 2702, 2861
EarI	CTCTTC	4 cut(s)	1261, 2187, 2702, 2861
EciI	GGCGGA	1 cut(s)	1664
Ecl136II	GAGCTC	1 cut(s)	2916
Eco130I	CCWWGG	4 cut(s)	749, 1818, 1918, 2493
Eco147I	AGGCCT	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	2918
Eco31I	GGTCTC	1 cut(s)	2848
Eco32I	GATATC	2 cut(s)	1672, 1706
Eco47I	GGWCC	3 cut(s)	66, 1393, 3034
Eco53kI	GAGCTC	1 cut(s)	2916
Eco57I	CTGAAG	5 cut(s)	1448, 1737, 1911, 1940, 2830
Eco88I	CYCGRG	2 cut(s)	41, 3186
EcoICRI	GAGCTC	1 cut(s)	2916
EcoO109I	RGGNCCY	1 cut(s)	1945
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	6 cut(s)	354, 666, 1201, 1947, 2817, 3154
EcoRV	GATATC	2 cut(s)	1672, 1706
EcoT14I	CCWWGG	4 cut(s)	749, 1818, 1918, 2493
EcoT38I	GRGCYC	1 cut(s)	2918
ErhI	CCWWGG	4 cut(s)	749, 1818, 1918, 2493
FaeI	CATG	7 cut(s)	217, 1139, 1297, 1569, 2150, 2325, 2974
FaqI	GGGAC	3 cut(s)	79, 100, 214
FatI	CATG	7 cut(s)	213, 1135, 1293, 1565, 2146, 2321, 2970
FauI	CCCGC	1 cut(s)	2310
FauNDI	CATATG	3 cut(s)	405, 1477, 2442
FbaI	TGATCA	1 cut(s)	1855
FblI	GTMKAC	1 cut(s)	2811
Fnu4HI	GCNGC	9 cut(s)	843, 906, 1023, 1695, 1827, 1931, 2547, 2988, 3183
FriOI	GRGCYC	1 cut(s)	2918
Fsp4HI	GCNGC	9 cut(s)	843, 906, 1023, 1695, 1827, 1931, 2547, 2988, 3183
FspBI	CTAG	8 cut(s)	932, 1379, 1454, 2207, 2348, 2555, 2807, 3092
GluI	GCNGC	9 cut(s)	843, 906, 1023, 1695, 1827, 1931, 2547, 2988, 3183
GsaI	CCCAGC	1 cut(s)	2786
GsuI	CTGGAG	3 cut(s)	689, 1335, 1970
HaeIII	GGCC	6 cut(s)	36, 1140, 1584, 1946, 2085, 2534
HapII	CCGG	2 cut(s)	1120, 1127
HgaI	GACGC	3 cut(s)	350, 863, 2788
Hin1II	CATG	7 cut(s)	217, 1139, 1297, 1569, 2150, 2325, 2974
HincII	GTYRAC	1 cut(s)	2812
HindII	GTYRAC	1 cut(s)	2812
HindIII	AAGCTT	2 cut(s)	207, 809
HpaII	CCGG	2 cut(s)	1120, 1127
HphI	GGTGA	5 cut(s)	505, 1160, 1994, 2801, 2912
Hpy166II	GTNNAC	6 cut(s)	394, 1016, 1322, 1784, 2470, 2812
Hpy8I	GTNNAC	6 cut(s)	394, 1016, 1322, 1784, 2470, 2812
Hpy99I	CGWCG	1 cut(s)	1910
HpyCH4III	ACNGT	6 cut(s)	730, 965, 1438, 1603, 1775, 3054
HpyCH4IV	ACGT	4 cut(s)	1468, 2165, 2259, 3027
HpyF10VI	GCNNNNNNNGC	8 cut(s)	298, 839, 911, 1652, 1694, 1858, 2495, 3138
HpySE526I	ACGT	4 cut(s)	1468, 2165, 2259, 3027
Hsp92II	CATG	7 cut(s)	217, 1139, 1297, 1569, 2150, 2325, 2974
Ksp22I	TGATCA	1 cut(s)	1855
LmnI	GCTCC	6 cut(s)	358, 379, 475, 511, 1238, 1951
Lsp1109I	GCAGC	9 cut(s)	854, 917, 1009, 1706, 1813, 1942, 2558, 2974, 3169
MaeI	CTAG	8 cut(s)	932, 1379, 1454, 2207, 2348, 2555, 2807, 3092
MaeII	ACGT	4 cut(s)	1468, 2165, 2259, 3027
MaeIII	GTNAC	2 cut(s)	1504, 2656
MfeI	CAATTG	2 cut(s)	260, 1725
MflI	RGATCY	9 cut(s)	20, 131, 351, 603, 1450, 1922, 2374, 2644, 2821
MhlI	GDGCHC	2 cut(s)	774, 2918
MlsI	TGGCCA	1 cut(s)	2085
MluNI	TGGCCA	1 cut(s)	2085
MlyI	GAGTC	4 cut(s)	122, 2296, 2465, 2807
MmeI	TCCRAC	5 cut(s)	630, 1722, 2244, 2694, 2852
Mox20I	TGGCCA	1 cut(s)	2085
MroXI	GAANNNNTTC	2 cut(s)	1359, 2481
MscI	TGGCCA	1 cut(s)	2085
MslI	CAYNNNNRTG	3 cut(s)	1278, 1298, 2540
Msp20I	TGGCCA	1 cut(s)	2085
MspCI	CTTAAG	1 cut(s)	1934
MspI	CCGG	2 cut(s)	1120, 1127
MspR9I	CCNGG	7 cut(s)	356, 668, 1128, 1203, 1949, 2819, 3156
MunI	CAATTG	2 cut(s)	260, 1725
MvaI	CCWGG	6 cut(s)	356, 668, 1203, 1949, 2819, 3156
MwoI	GCNNNNNNNGC	8 cut(s)	298, 839, 911, 1652, 1694, 1858, 2495, 3138
NciI	CCSGG	1 cut(s)	1128
NdeI	CATATG	3 cut(s)	405, 1477, 2442
NheI	GCTAGC	1 cut(s)	3091
NlaIII	CATG	7 cut(s)	217, 1139, 1297, 1569, 2150, 2325, 2974
NlaIV	GGNNCC	4 cut(s)	67, 1159, 1816, 2823
NmuCI	GTSAC	1 cut(s)	2656
NspI	RCATGY	1 cut(s)	217
NspV	TTCGAA	2 cut(s)	321, 948
PaeR7I	CTCGAG	2 cut(s)	41, 3186
PagI	TCATGA	1 cut(s)	1293
PasI	CCCWGGG	1 cut(s)	3155
PceI	AGGCCT	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	1359, 2481
PfeI	GAWTC	9 cut(s)	95, 386, 496, 551, 1061, 2116, 2123, 2578, 2591
PfoI	TCCNGGA	2 cut(s)	354, 666
PkrI	GCNGC	9 cut(s)	844, 907, 1024, 1696, 1828, 1932, 2548, 2989, 3184
PleI	GAGTC	4 cut(s)	121, 2296, 2465, 2807
PpsI	GAGTC	4 cut(s)	121, 2296, 2465, 2807
Ppu21I	YACGTR	1 cut(s)	3028
PshBI	ATTAAT	1 cut(s)	564
PsiI	TTATAA	2 cut(s)	102, 2435
Psp124BI	GAGCTC	1 cut(s)	2918
Psp1406I	AACGTT	1 cut(s)	2165
Psp6I	CCWGG	6 cut(s)	354, 666, 1201, 1947, 2817, 3154
PspFI	CCCAGC	1 cut(s)	2782
PspGI	CCWGG	6 cut(s)	354, 666, 1201, 1947, 2817, 3154
PspN4I	GGNNCC	4 cut(s)	67, 1159, 1816, 2823
PspPI	GGNCC	5 cut(s)	66, 1393, 1945, 2532, 3034
PspXI	VCTCGAGB	1 cut(s)	41
PstI	CTGCAG	2 cut(s)	303, 907
PstNI	CAGNNNCTG	1 cut(s)	2239
PsuI	RGATCY	9 cut(s)	20, 131, 351, 603, 1450, 1922, 2374, 2644, 2821
RsaI	GTAC	6 cut(s)	47, 395, 1540, 1597, 1998, 2606
RsaNI	GTAC	6 cut(s)	46, 394, 1539, 1596, 1997, 2605
RseI	CAYNNNNRTG	3 cut(s)	1278, 1298, 2540
SacI	GAGCTC	1 cut(s)	2918
SalI	GTCGAC	1 cut(s)	2810
SatI	GCNGC	9 cut(s)	843, 906, 1023, 1695, 1827, 1931, 2547, 2988, 3183
Sau96I	GGNCC	5 cut(s)	66, 1393, 1945, 2532, 3034
SchI	GAGTC	4 cut(s)	122, 2296, 2465, 2807
ScrFI	CCNGG	7 cut(s)	356, 668, 1128, 1203, 1949, 2819, 3156
SduI	GDGCHC	2 cut(s)	774, 2918
SfcI	CTRYAG	3 cut(s)	299, 903, 1602
Sfr274I	CTCGAG	2 cut(s)	41, 3186
SfuI	TTCGAA	2 cut(s)	321, 948
SinI	GGWCC	3 cut(s)	66, 1393, 3034
SlaI	CTCGAG	2 cut(s)	41, 3186
SmiMI	CAYNNNNRTG	3 cut(s)	1278, 1298, 2540
SmlI	CTYRAG	8 cut(s)	15, 41, 50, 614, 1046, 1934, 2801, 3186
SmoI	CTYRAG	8 cut(s)	15, 41, 50, 614, 1046, 1934, 2801, 3186
SseBI	AGGCCT	1 cut(s)	36
SsiI	CCGC	4 cut(s)	203, 1675, 2317, 3095
SspI	AATATT	2 cut(s)	2020, 2881
SspMI	CTAG	8 cut(s)	932, 1379, 1454, 2207, 2348, 2555, 2807, 3092
SstI	GAGCTC	1 cut(s)	2918
StuI	AGGCCT	1 cut(s)	36
StyD4I	CCNGG	7 cut(s)	354, 666, 1126, 1201, 1947, 2817, 3154
StyI	CCWWGG	4 cut(s)	749, 1818, 1918, 2493
TaaI	ACNGT	6 cut(s)	730, 965, 1438, 1603, 1775, 3054
TaiI	ACGT	4 cut(s)	1471, 2168, 2262, 3030
TatI	WGTACW	3 cut(s)	393, 1595, 1996
TfiI	GAWTC	9 cut(s)	95, 386, 496, 551, 1061, 2116, 2123, 2578, 2591
TscAI	CASTG	6 cut(s)	378, 1431, 1506, 1739, 2053, 2943
TseFI	GTSAC	1 cut(s)	2656
TseI	GCWGC	9 cut(s)	842, 905, 1022, 1694, 1826, 1930, 2546, 2987, 3182
Tsp45I	GTSAC	1 cut(s)	2656
TspGWI	ACGGA	1 cut(s)	971
TspRI	CASTG	6 cut(s)	378, 1431, 1506, 1739, 2053, 2943
Vha464I	CTTAAG	1 cut(s)	1934
VpaK11BI	GGWCC	3 cut(s)	66, 1393, 3034
VspI	ATTAAT	1 cut(s)	564
XbaI	TCTAGA	1 cut(s)	1453
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1498, 2078, 2868
XhoI	CTCGAG	2 cut(s)	41, 3186
XmiI	GTMKAC	1 cut(s)	2811
XmnI	GAANNNNTTC	2 cut(s)	1359, 2481
XspI	CTAG	8 cut(s)	932, 1379, 1454, 2207, 2348, 2555, 2807, 3092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.