Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Forward (+)

21753974 .. 21755148

Gene Structure 1175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0237300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCAGTCTGCAAAGGAGAAGATCAGTAACTTGGCCAGTGCTTCCAAGGAGAAAGTAGAGACTCACAAAGCCAAAACGGAAGAGAAGGTTGAGAAGATGACAGCGAGGACAGAGGAAGAGAAGAGAATAGCGGAGGAGAAGAGAAGAGCTAAAGAGGCAGAAGCGAAGATGAAGCTGCATGAGTCCAAAGCCGAGCATGAAGCCGATAAACTGACTACTGGTGCTCCTGCAACTGATGCCGGTGCTCCGATGGGTAGGACCGCGGTTCCATCGTATCCACTGGGAGGTTACAGCACCCGAAAACTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

103

Amino Acids

11.32

Weight (kDa)

9.3

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_1	PF03760	1 - 70	6.3e-23	Late embryogenesis abundant (LEA) group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	131, 261, 263
AcoI	YGGCCR	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	284
AluBI	AGCT	2 cut(s)	149, 175
AluI	AGCT	2 cut(s)	149, 175
Alw21I	GWGCWC	2 cut(s)	226, 247
Alw26I	GTCTC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	258
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	226, 247
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	244, 277
BciVI	GTATCC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	45, 261
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	36, 223, 285
BseDI	CCNNGG	2 cut(s)	45, 261
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseNI	ACTGG	3 cut(s)	36, 223, 285
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	226, 247
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	226, 247
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	3 cut(s)	131, 261, 263
BspANI	GGCC	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	3 cut(s)	36, 223, 285
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	45, 261
BssMI	GATC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	45
Bst6I	CTCTTC	5 cut(s)	75, 111, 116, 134, 139
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 236
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	43, 278
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	258
Cfr42I	CCGCGG	1 cut(s)	264
CviAII	CATG	2 cut(s)	179, 197
CviJI	RGCY	6 cut(s)	35, 71, 149, 175, 191, 203
CviKI_1	RGCY	6 cut(s)	35, 71, 149, 175, 191, 203
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	5 cut(s)	75, 111, 116, 134, 139
EarI	CTCTTC	5 cut(s)	75, 111, 116, 134, 139
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	182, 200
FaiI	YATR	2 cut(s)	180, 198
FatI	CATG	2 cut(s)	178, 196
Fnu4HI	GCNGC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	310
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	2 cut(s)	182, 200
HinfI	GANTC	2 cut(s)	61, 182
HpaII	CCGG	1 cut(s)	240
Hpy188I	TCNGA	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	4 cut(s)	4, 11, 178, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 236
Hsp92II	CATG	2 cut(s)	182, 200
KspI	CCGCGG	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	21
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	229, 250
LpnPI	CCDG	5 cut(s)	49, 204, 240, 253, 266
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	26, 287
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	8 cut(s)	31, 92, 106, 128, 133, 151, 156, 178
MhlI	GDGCHC	2 cut(s)	226, 247
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	55, 191
MnlI	CCTC	5 cut(s)	99, 106, 127, 148, 278
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	155, 236
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	2 cut(s)	182, 200
NlaIV	GGNNCC	1 cut(s)	267
NmeAIII	GCCGAG	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	2 cut(s)	55, 190
PpsI	GAGTC	2 cut(s)	55, 190
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	258
SacII	CCGCGG	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	139
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	2 cut(s)	55, 191
SduI	GDGCHC	2 cut(s)	226, 247
SetI	ASST	4 cut(s)	90, 151, 177, 289
SfaNI	GCATC	1 cut(s)	226
Sfr303I	CCGCGG	1 cut(s)	264
SgrBI	CCGCGG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	258
SsiI	CCGC	3 cut(s)	131, 261, 263
SspMI	CTAG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	45
TscAI	CASTG	2 cut(s)	43, 285
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	185, 213
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	43, 285
VpaK11BI	GGWCC	1 cut(s)	258
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.