Structural maintenance of chromosomes protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SMC_N | PF02463 | 25 - 1223 | 2.8e-56 | RecF/RecN/SMC N terminal domain |
| AAA_15 | PF13175 | 25 - 392 | 1.3e-07 | AAA ATPase domain |
| AAA_29 | PF13555 | 28 - 85 | 8.4e-06 | P-loop containing region of AAA domain |
| AAA_21 | PF13304 | 50 - 108 | 6.3e-06 | AAA domain, putative AbiEii toxin, Type IV TA system |
| SMC_hinge | PF06470 | 555 - 671 | 1.8e-22 | SMC proteins Flexible Hinge Domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1117 |
| AbsI | CCTCGAGG | 1 cut(s) | 587 |
| Acc65I | GGTACC | 1 cut(s) | 2078 |
| AccB1I | GGYRCC | 2 cut(s) | 1694, 2078 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 289 |
| AccI | GTMKAC | 2 cut(s) | 3174, 3345 |
| AccII | CGCG | 1 cut(s) | 126 |
| AccIII | TCCGGA | 1 cut(s) | 3004 |
| AciI | CCGC | 7 cut(s) | 24, 27, 155, 238, 698, 1801, 2367 |
| AclWI | GGATC | 3 cut(s) | 1995, 2734, 2996 |
| AcsI | RAATTY | 9 cut(s) | 853, 917, 992, 1266, 1597, 2030, 2695, 2870, 2982 |
| AcuI | CTGAAG | 8 cut(s) | 468, 494, 1136, 1157, 1260, 1758, 1889, 2495 |
| AcvI | CACGTG | 1 cut(s) | 2108 |
| AdeI | CACNNNGTG | 1 cut(s) | 2111 |
| AfaI | GTAC | 6 cut(s) | 312, 350, 1899, 2080, 3140, 3667 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 23, 289, 2221, 2281, 2458, 3141 |
| AflIII | ACRYGT | 5 cut(s) | 124, 2003, 2199, 2790, 3615 |
| AgeI | ACCGGT | 1 cut(s) | 1248 |
| AhlI | ACTAGT | 1 cut(s) | 3460 |
| AjiI | CACGTC | 1 cut(s) | 2791 |
| AjnI | CCWGG | 3 cut(s) | 361, 2358, 3688 |
| AleI | CACNNNNGTG | 2 cut(s) | 1976, 2144 |
| Alw21I | GWGCWC | 5 cut(s) | 1311, 1584, 2184, 2412, 2784 |
| Alw26I | GTCTC | 9 cut(s) | 61, 705, 737, 834, 943, 2233, 2272, 2321, 2741 |
| Alw44I | GTGCAC | 1 cut(s) | 1307 |
| AlwI | GGATC | 3 cut(s) | 1995, 2734, 2996 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2623 |
| Ama87I | CYCGRG | 4 cut(s) | 384, 587, 1067, 2661 |
| Aor13HI | TCCGGA | 1 cut(s) | 3004 |
| AoxI | GGCC | 2 cut(s) | 1741, 2272 |
| ApaLI | GTGCAC | 1 cut(s) | 1307 |
| ApoI | RAATTY | 9 cut(s) | 853, 917, 992, 1266, 1597, 2030, 2695, 2870, 2982 |
| AsiGI | ACCGGT | 1 cut(s) | 1248 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 357, 573, 1382, 2732, 2982 |
| Asp718I | GGTACC | 1 cut(s) | 2078 |
| AspLEI | GCGC | 2 cut(s) | 1739, 2060 |
| AspS9I | GGNCC | 4 cut(s) | 131, 164, 557, 3355 |
| AsuHPI | GGTGA | 9 cut(s) | 128, 272, 700, 1115, 2165, 2525, 2696, 3335, 3446 |
| AsuII | TTCGAA | 1 cut(s) | 2035 |
| AsuNHI | GCTAGC | 1 cut(s) | 3625 |
| AvaI | CYCGRG | 4 cut(s) | 384, 587, 1067, 2661 |
| AvaII | GGWCC | 4 cut(s) | 131, 164, 557, 3355 |
| BaeGI | GKGCMC | 1 cut(s) | 1311 |
| BanI | GGYRCC | 2 cut(s) | 1694, 2078 |
| BanII | GRGCYC | 4 cut(s) | 1584, 2184, 2412, 3070 |
| BbrPI | CACGTG | 1 cut(s) | 2108 |
| Bbv12I | GWGCWC | 5 cut(s) | 1311, 1584, 2184, 2412, 2784 |
| BccI | CCATC | 5 cut(s) | 1675, 2048, 2275, 3022, 3483 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3408, 3442 |
| BciT130I | CCWGG | 3 cut(s) | 363, 2360, 3690 |
| BclI | TGATCA | 2 cut(s) | 1993, 3309 |
| BcoDI | GTCTC | 9 cut(s) | 61, 705, 737, 834, 943, 2233, 2272, 2321, 2741 |
| BcuI | ACTAGT | 1 cut(s) | 3460 |
| BfaI | CTAG | 7 cut(s) | 1187, 2276, 2351, 2678, 2856, 3461, 3626 |
| BfmI | CTRYAG | 3 cut(s) | 816, 1440, 2253 |
| BfoI | RGCGCY | 1 cut(s) | 2061 |
| BglII | AGATCT | 3 cut(s) | 481, 1297, 2992 |
| BlpI | GCTNAGC | 2 cut(s) | 1578, 3096 |
| Bme1390I | CCNGG | 3 cut(s) | 363, 2360, 3690 |
| Bme18I | GGWCC | 4 cut(s) | 131, 164, 557, 3355 |
| BmeT110I | CYCGRG | 4 cut(s) | 384, 587, 1067, 2661 |
| BmgBI | CACGTC | 1 cut(s) | 2791 |
| BmgT120I | GGNCC | 4 cut(s) | 131, 164, 557, 3355 |
| BmiI | GGNNCC | 5 cut(s) | 559, 1696, 2080, 2125, 3357 |
| BmrFI | CCNGG | 3 cut(s) | 363, 2360, 3690 |
| BmtI | GCTAGC | 1 cut(s) | 3629 |
| BpmI | CTGGAG | 5 cut(s) | 321, 693, 2820, 3110, 3356 |
| Bpu10I | CCTNAGC | 1 cut(s) | 42 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1578, 3096 |
| Bpu14I | TTCGAA | 1 cut(s) | 2035 |
| BpuEI | CTTGAG | 6 cut(s) | 449, 1100, 1114, 1372, 2396, 2474 |
| Bsa29I | ATCGAT | 1 cut(s) | 330 |
| BsaAI | YACGTR | 3 cut(s) | 2006, 2108, 3562 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1992 |
| BsaJI | CCNNGG | 3 cut(s) | 1286, 1962, 2358 |
| BsaWI | WCCGGW | 4 cut(s) | 1248, 3004, 3141, 3570 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 294, 324 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 23, 289, 2221, 2281, 2458, 3141 |
| Bse118I | RCCGGY | 3 cut(s) | 666, 1248, 1739 |
| Bse1I | ACTGG | 4 cut(s) | 2146, 2292, 2803, 3093 |
| Bse3DI | GCAATG | 4 cut(s) | 193, 207, 1599, 3414 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1992 |
| BseAI | TCCGGA | 1 cut(s) | 3004 |
| BseBI | CCWGG | 3 cut(s) | 363, 2360, 3690 |
| BseCI | ATCGAT | 1 cut(s) | 330 |
| BseDI | CCNNGG | 3 cut(s) | 1286, 1962, 2358 |
| BseJI | GATNNNNATC | 1 cut(s) | 1992 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 23, 289, 2221, 2281, 2458, 3141 |
| BseMI | GCAATG | 4 cut(s) | 193, 207, 1599, 3414 |
| BseNI | ACTGG | 4 cut(s) | 2146, 2292, 2803, 3093 |
| BseRI | GAGGAG | 1 cut(s) | 1208 |
| BseSI | GKGCMC | 1 cut(s) | 1311 |
| Bsh1236I | CGCG | 1 cut(s) | 126 |
| BshFI | GGCC | 2 cut(s) | 1743, 2274 |
| BshNI | GGYRCC | 2 cut(s) | 1694, 2078 |
| BshTI | ACCGGT | 1 cut(s) | 1248 |
| BshVI | ATCGAT | 1 cut(s) | 330 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1311, 1584, 2184, 2412, 2784 |
| BsiHKCI | CYCGRG | 4 cut(s) | 384, 587, 1067, 2661 |
| BsiSI | CCGG | 6 cut(s) | 667, 1249, 1740, 3005, 3142, 3571 |
| BslFI | GGGAC | 2 cut(s) | 543, 1700 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 23, 289, 2221, 2281, 2458, 3141 |
| BsmAI | GTCTC | 9 cut(s) | 61, 705, 737, 834, 943, 2233, 2272, 2321, 2741 |
| BsmBI | CGTCTC | 1 cut(s) | 2741 |
| BsmFI | GGGAC | 2 cut(s) | 543, 1700 |
| BsmI | GAATGC | 4 cut(s) | 392, 1949, 2732, 2960 |
| BsnI | GGCC | 2 cut(s) | 1743, 2274 |
| BsoBI | CYCGRG | 4 cut(s) | 384, 587, 1067, 2661 |
| Bsp119I | TTCGAA | 1 cut(s) | 2035 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1311, 1584, 2184, 2412, 2784, 3070 |
| Bsp13I | TCCGGA | 1 cut(s) | 3004 |
| Bsp1407I | TGTACA | 1 cut(s) | 310 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1578, 3096 |
| BspACI | CCGC | 7 cut(s) | 24, 27, 155, 238, 698, 1801, 2367 |
| BspANI | GGCC | 2 cut(s) | 1743, 2274 |
| BspDI | ATCGAT | 1 cut(s) | 330 |
| BspEI | TCCGGA | 1 cut(s) | 3004 |
| BspFNI | CGCG | 1 cut(s) | 126 |
| BspHI | TCATGA | 3 cut(s) | 90, 375, 537 |
| BspLI | GGNNCC | 5 cut(s) | 559, 1696, 2080, 2125, 3357 |
| BspMAI | CTGCAG | 2 cut(s) | 1444, 2257 |
| BspOI | GCTAGC | 1 cut(s) | 3629 |
| BspPI | GGATC | 3 cut(s) | 1995, 2734, 2996 |
| BspQI | GCTCTTC | 2 cut(s) | 3395, 3665 |
| BspT104I | TTCGAA | 1 cut(s) | 2035 |
| BspT107I | GGYRCC | 2 cut(s) | 1694, 2078 |
| BsrDI | GCAATG | 4 cut(s) | 193, 207, 1599, 3414 |
| BsrFI | RCCGGY | 3 cut(s) | 666, 1248, 1739 |
| BsrGI | TGTACA | 1 cut(s) | 310 |
| BsrI | ACTGG | 4 cut(s) | 2146, 2292, 2803, 3093 |
| BssAI | RCCGGY | 3 cut(s) | 666, 1248, 1739 |
| BssECI | CCNNGG | 3 cut(s) | 1286, 1962, 2358 |
| BssT1I | CCWWGG | 2 cut(s) | 1286, 1962 |
| Bst2UI | CCWGG | 3 cut(s) | 363, 2360, 3690 |
| Bst4CI | ACNGT | 7 cut(s) | 315, 358, 497, 817, 1975, 2244, 3665 |
| Bst6I | CTCTTC | 9 cut(s) | 315, 900, 941, 1506, 1601, 2032, 2646, 3395, 3665 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1955 |
| BstAUI | TGTACA | 1 cut(s) | 310 |
| BstBAI | YACGTR | 3 cut(s) | 2006, 2108, 3562 |
| BstBI | TTCGAA | 1 cut(s) | 2035 |
| BstC8I | GCNNGC | 4 cut(s) | 848, 1735, 1741, 3627 |
| BstEII | GGTNACC | 1 cut(s) | 1244 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2456 |
| BstFNI | CGCG | 1 cut(s) | 126 |
| BstH2I | RGCGCY | 1 cut(s) | 2061 |
| BstHHI | GCGC | 2 cut(s) | 1739, 2060 |
| BstMAI | GTCTC | 9 cut(s) | 61, 705, 737, 834, 943, 2233, 2272, 2321, 2741 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 238, 1048, 1379, 1496, 1703, 1955, 2407 |
| BstNI | CCWGG | 3 cut(s) | 363, 2360, 3690 |
| BstNSI | RCATGY | 6 cut(s) | 754, 1046, 1788, 2203, 2705, 3619 |
| BstPI | GGTNACC | 1 cut(s) | 1244 |
| BstSCI | CCNGG | 3 cut(s) | 361, 2358, 3688 |
| BstSFI | CTRYAG | 3 cut(s) | 816, 1440, 2253 |
| BstSLI | GKGCMC | 1 cut(s) | 1311 |
| BstUI | CGCG | 1 cut(s) | 126 |
| BstX2I | RGATCY | 5 cut(s) | 481, 1297, 1987, 2739, 2992 |
| BstYI | RGATCY | 5 cut(s) | 481, 1297, 1987, 2739, 2992 |
| Bsu15I | ATCGAT | 1 cut(s) | 330 |
| BsuRI | GGCC | 2 cut(s) | 1743, 2274 |
| BsuTUI | ATCGAT | 1 cut(s) | 330 |
| BtrI | CACGTC | 1 cut(s) | 2791 |
| BtsIMutI | CAGTG | 4 cut(s) | 444, 1971, 2139, 3388 |
| Cac8I | GCNNGC | 4 cut(s) | 848, 1735, 1741, 3627 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2623 |
| CciI | TCATGA | 3 cut(s) | 90, 375, 537 |
| CfoI | GCGC | 2 cut(s) | 1739, 2060 |
| Cfr10I | RCCGGY | 3 cut(s) | 666, 1248, 1739 |
| Cfr13I | GGNCC | 4 cut(s) | 131, 164, 557, 3355 |
| ClaI | ATCGAT | 1 cut(s) | 330 |
| CseI | GACGC | 2 cut(s) | 115, 3527 |
| Csp6I | GTAC | 6 cut(s) | 311, 349, 1898, 2079, 3139, 3666 |
| CspAI | ACCGGT | 1 cut(s) | 1248 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2089, 2124 |
| CviQI | GTAC | 6 cut(s) | 311, 349, 1898, 2079, 3139, 3666 |
| DraIII | CACNNNGTG | 1 cut(s) | 2111 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1117 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1117 |
| Eam1104I | CTCTTC | 9 cut(s) | 315, 900, 941, 1506, 1601, 2032, 2646, 3395, 3665 |
| EarI | CTCTTC | 9 cut(s) | 315, 900, 941, 1506, 1601, 2032, 2646, 3395, 3665 |
| Ecl136II | GAGCTC | 3 cut(s) | 1582, 2182, 2410 |
| Eco130I | CCWWGG | 2 cut(s) | 1286, 1962 |
| Eco24I | GRGCYC | 4 cut(s) | 1584, 2184, 2412, 3070 |
| Eco32I | GATATC | 1 cut(s) | 2563 |
| Eco47I | GGWCC | 4 cut(s) | 131, 164, 557, 3355 |
| Eco53kI | GAGCTC | 3 cut(s) | 1582, 2182, 2410 |
| Eco57I | CTGAAG | 8 cut(s) | 468, 494, 1136, 1157, 1260, 1758, 1889, 2495 |
| Eco72I | CACGTG | 1 cut(s) | 2108 |
| Eco88I | CYCGRG | 4 cut(s) | 384, 587, 1067, 2661 |
| Eco91I | GGTNACC | 1 cut(s) | 1244 |
| EcoICRI | GAGCTC | 3 cut(s) | 1582, 2182, 2410 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2456 |
| EcoO109I | RGGNCCY | 1 cut(s) | 557 |
| EcoO65I | GGTNACC | 1 cut(s) | 1244 |
| EcoRI | GAATTC | 2 cut(s) | 1597, 2870 |
| EcoRII | CCWGG | 3 cut(s) | 361, 2358, 3688 |
| EcoRV | GATATC | 1 cut(s) | 2563 |
| EcoT14I | CCWWGG | 2 cut(s) | 1286, 1962 |
| EcoT38I | GRGCYC | 4 cut(s) | 1584, 2184, 2412, 3070 |
| ErhI | CCWWGG | 2 cut(s) | 1286, 1962 |
| Esp3I | CGTCTC | 1 cut(s) | 2741 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 561, 593, 945, 977, 3141, 3173 |
| FaqI | GGGAC | 2 cut(s) | 543, 1700 |
| FauNDI | CATATG | 4 cut(s) | 109, 805, 2014, 2973 |
| FbaI | TGATCA | 2 cut(s) | 1993, 3309 |
| FblI | GTMKAC | 2 cut(s) | 3174, 3345 |
| FriOI | GRGCYC | 4 cut(s) | 1584, 2184, 2412, 3070 |
| FspBI | CTAG | 7 cut(s) | 1187, 2276, 2351, 2678, 2856, 3461, 3626 |
| GlaI | GCGC | 2 cut(s) | 1738, 2059 |
| GsuI | CTGGAG | 5 cut(s) | 321, 693, 2820, 3110, 3356 |
| HaeII | RGCGCY | 1 cut(s) | 2061 |
| HaeIII | GGCC | 2 cut(s) | 1743, 2274 |
| HapII | CCGG | 6 cut(s) | 667, 1249, 1740, 3005, 3142, 3571 |
| HgaI | GACGC | 2 cut(s) | 115, 3527 |
| HhaI | GCGC | 2 cut(s) | 1739, 2060 |
| Hin6I | GCGC | 2 cut(s) | 1737, 2058 |
| HinP1I | GCGC | 2 cut(s) | 1737, 2058 |
| HincII | GTYRAC | 3 cut(s) | 2197, 2637, 2796 |
| HindII | GTYRAC | 3 cut(s) | 2197, 2637, 2796 |
| HindIII | AAGCTT | 4 cut(s) | 1169, 1319, 3011, 3048 |
| HpaII | CCGG | 6 cut(s) | 667, 1249, 1740, 3005, 3142, 3571 |
| HphI | GGTGA | 9 cut(s) | 128, 272, 700, 1115, 2165, 2525, 2696, 3335, 3446 |
| Hpy166II | GTNNAC | 8 cut(s) | 119, 1309, 1346, 2197, 2637, 2796, 3175, 3346 |
| Hpy8I | GTNNAC | 8 cut(s) | 119, 1309, 1346, 2197, 2637, 2796, 3175, 3346 |
| Hpy99I | CGWCG | 2 cut(s) | 131, 3521 |
| HpyCH4III | ACNGT | 7 cut(s) | 315, 358, 497, 817, 1975, 2244, 3665 |
| HpyCH4IV | ACGT | 9 cut(s) | 1017, 2005, 2107, 2750, 2790, 3202, 3501, 3540, 3561 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 238, 1048, 1379, 1496, 1703, 1955, 2407 |
| HpySE526I | ACGT | 9 cut(s) | 1017, 2005, 2107, 2750, 2790, 3202, 3501, 3540, 3561 |
| HspAI | GCGC | 2 cut(s) | 1737, 2058 |
| Kpn2I | TCCGGA | 1 cut(s) | 3004 |
| KpnI | GGTACC | 1 cut(s) | 2082 |
| KroI | GCCGGC | 1 cut(s) | 1739 |
| KroNI | GCCGGC | 1 cut(s) | 1741 |
| Ksp22I | TGATCA | 2 cut(s) | 1993, 3309 |
| LguI | GCTCTTC | 2 cut(s) | 3395, 3665 |
| LmnI | GCTCC | 3 cut(s) | 2801, 3144, 3337 |
| MaeI | CTAG | 7 cut(s) | 1187, 2276, 2351, 2678, 2856, 3461, 3626 |
| MaeII | ACGT | 9 cut(s) | 1017, 2005, 2107, 2750, 2790, 3202, 3501, 3540, 3561 |
| MaeIII | GTNAC | 5 cut(s) | 451, 1244, 2704, 2927, 3190 |
| MflI | RGATCY | 5 cut(s) | 481, 1297, 1987, 2739, 2992 |
| MhlI | GDGCHC | 6 cut(s) | 1311, 1584, 2184, 2412, 2784, 3070 |
| MluI | ACGCGT | 1 cut(s) | 124 |
| MlyI | GAGTC | 8 cut(s) | 41, 932, 1121, 1127, 1618, 2049, 3119, 3341 |
| MmeI | TCCRAC | 4 cut(s) | 142, 2206, 3228, 3532 |
| MroI | TCCGGA | 1 cut(s) | 3004 |
| MroNI | GCCGGC | 1 cut(s) | 1739 |
| MroXI | GAANNNNTTC | 5 cut(s) | 357, 573, 1382, 2732, 2982 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1783, 1976, 2144 |
| MspA1I | CMGCKG | 2 cut(s) | 2473, 3100 |
| MspI | CCGG | 6 cut(s) | 667, 1249, 1740, 3005, 3142, 3571 |
| MspR9I | CCNGG | 3 cut(s) | 363, 2360, 3690 |
| Mva1269I | GAATGC | 4 cut(s) | 392, 1949, 2732, 2960 |
| MvaI | CCWGG | 3 cut(s) | 363, 2360, 3690 |
| MvnI | CGCG | 1 cut(s) | 126 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 238, 1048, 1379, 1496, 1703, 1955, 2407 |
| NaeI | GCCGGC | 1 cut(s) | 1741 |
| NdeI | CATATG | 4 cut(s) | 109, 805, 2014, 2973 |
| NgoMIV | GCCGGC | 1 cut(s) | 1739 |
| NheI | GCTAGC | 1 cut(s) | 3625 |
| NlaIV | GGNNCC | 5 cut(s) | 559, 1696, 2080, 2125, 3357 |
| NmeAIII | GCCGAG | 1 cut(s) | 3160 |
| NmuCI | GTSAC | 2 cut(s) | 2704, 3190 |
| NspI | RCATGY | 6 cut(s) | 754, 1046, 1788, 2203, 2705, 3619 |
| NspV | TTCGAA | 1 cut(s) | 2035 |
| OliI | CACNNNNGTG | 2 cut(s) | 1976, 2144 |
| PaeR7I | CTCGAG | 3 cut(s) | 587, 1067, 2661 |
| PagI | TCATGA | 3 cut(s) | 90, 375, 537 |
| PciI | ACATGT | 2 cut(s) | 2199, 3615 |
| PciSI | GCTCTTC | 2 cut(s) | 3395, 3665 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 3507, 3525, 3546 |
| PctI | GAATGC | 4 cut(s) | 392, 1949, 2732, 2960 |
| PdiI | GCCGGC | 1 cut(s) | 1741 |
| PdmI | GAANNNNTTC | 5 cut(s) | 357, 573, 1382, 2732, 2982 |
| PfeI | GAWTC | 6 cut(s) | 505, 1088, 1517, 2551, 3112, 3645 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 289 |
| PfoI | TCCNGGA | 2 cut(s) | 361, 3688 |
| PinAI | ACCGGT | 1 cut(s) | 1248 |
| PleI | GAGTC | 8 cut(s) | 40, 931, 1121, 1126, 1617, 2048, 3119, 3341 |
| PmaCI | CACGTG | 1 cut(s) | 2108 |
| PmlI | CACGTG | 1 cut(s) | 2108 |
| PpsI | GAGTC | 8 cut(s) | 40, 931, 1121, 1126, 1617, 2048, 3119, 3341 |
| Ppu21I | YACGTR | 3 cut(s) | 2006, 2108, 3562 |
| PpuMI | RGGWCCY | 1 cut(s) | 557 |
| PscI | ACATGT | 2 cut(s) | 2199, 3615 |
| Psp124BI | GAGCTC | 3 cut(s) | 1584, 2184, 2412 |
| Psp5II | RGGWCCY | 1 cut(s) | 557 |
| Psp6I | CCWGG | 3 cut(s) | 361, 2358, 3688 |
| PspCI | CACGTG | 1 cut(s) | 2108 |
| PspEI | GGTNACC | 1 cut(s) | 1244 |
| PspGI | CCWGG | 3 cut(s) | 361, 2358, 3688 |
| PspN4I | GGNNCC | 5 cut(s) | 559, 1696, 2080, 2125, 3357 |
| PspPI | GGNCC | 4 cut(s) | 131, 164, 557, 3355 |
| PspPPI | RGGWCCY | 1 cut(s) | 557 |
| PspXI | VCTCGAGB | 2 cut(s) | 587, 1067 |
| PstI | CTGCAG | 2 cut(s) | 1444, 2257 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2623 |
| PsuI | RGATCY | 5 cut(s) | 481, 1297, 1987, 2739, 2992 |
| PvuII | CAGCTG | 2 cut(s) | 2473, 3100 |
| RsaI | GTAC | 6 cut(s) | 312, 350, 1899, 2080, 3140, 3667 |
| RsaNI | GTAC | 6 cut(s) | 311, 349, 1898, 2079, 3139, 3666 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1783, 1976, 2144 |
| SacI | GAGCTC | 3 cut(s) | 1584, 2184, 2412 |
| SapI | GCTCTTC | 2 cut(s) | 3395, 3665 |
| Sau96I | GGNCC | 4 cut(s) | 131, 164, 557, 3355 |
| SchI | GAGTC | 8 cut(s) | 41, 932, 1121, 1127, 1618, 2049, 3119, 3341 |
| ScrFI | CCNGG | 3 cut(s) | 363, 2360, 3690 |
| SduI | GDGCHC | 6 cut(s) | 1311, 1584, 2184, 2412, 2784, 3070 |
| SfcI | CTRYAG | 3 cut(s) | 816, 1440, 2253 |
| Sfr274I | CTCGAG | 3 cut(s) | 587, 1067, 2661 |
| SfuI | TTCGAA | 1 cut(s) | 2035 |
| SinI | GGWCC | 4 cut(s) | 131, 164, 557, 3355 |
| SlaI | CTCGAG | 3 cut(s) | 587, 1067, 2661 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1783, 1976, 2144 |
| SmlI | CTYRAG | 9 cut(s) | 464, 587, 1067, 1079, 1129, 1351, 2411, 2453, 2661 |
| SmoI | CTYRAG | 9 cut(s) | 464, 587, 1067, 1079, 1129, 1351, 2411, 2453, 2661 |
| SpeI | ACTAGT | 1 cut(s) | 3460 |
| SsiI | CCGC | 7 cut(s) | 24, 27, 155, 238, 698, 1801, 2367 |
| SspMI | CTAG | 7 cut(s) | 1187, 2276, 2351, 2678, 2856, 3461, 3626 |
| SstI | GAGCTC | 3 cut(s) | 1584, 2184, 2412 |
| StyD4I | CCNGG | 3 cut(s) | 361, 2358, 3688 |
| StyI | CCWWGG | 2 cut(s) | 1286, 1962 |
| TaaI | ACNGT | 7 cut(s) | 315, 358, 497, 817, 1975, 2244, 3665 |
| TaiI | ACGT | 9 cut(s) | 1020, 2008, 2110, 2753, 2793, 3205, 3504, 3543, 3564 |
| TaqII | GACCGA | 1 cut(s) | 119 |
| TatI | WGTACW | 1 cut(s) | 310 |
| TauI | GCSGC | 4 cut(s) | 27, 30, 241, 2369 |
| TfiI | GAWTC | 6 cut(s) | 505, 1088, 1517, 2551, 3112, 3645 |
| TscAI | CASTG | 4 cut(s) | 451, 1978, 2146, 3388 |
| TseFI | GTSAC | 2 cut(s) | 2704, 3190 |
| Tsp45I | GTSAC | 2 cut(s) | 2704, 3190 |
| TspGWI | ACGGA | 2 cut(s) | 2204, 3180 |
| TspRI | CASTG | 4 cut(s) | 451, 1978, 2146, 3388 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 289 |
| VneI | GTGCAC | 1 cut(s) | 1307 |
| VpaK11BI | GGWCC | 4 cut(s) | 131, 164, 557, 3355 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2456 |
| XapI | RAATTY | 9 cut(s) | 853, 917, 992, 1266, 1597, 2030, 2695, 2870, 2982 |
| XceI | RCATGY | 6 cut(s) | 754, 1046, 1788, 2203, 2705, 3619 |
| XhoI | CTCGAG | 3 cut(s) | 587, 1067, 2661 |
| XmiI | GTMKAC | 2 cut(s) | 3174, 3345 |
| XmnI | GAANNNNTTC | 5 cut(s) | 357, 573, 1382, 2732, 2982 |
| XspI | CTAG | 7 cut(s) | 1187, 2276, 2351, 2678, 2856, 3461, 3626 |