Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

36959111 .. 36960240

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGGAGTCGAAGGAAACCTCACAGCCGGACAAGGTGTTTTGGATGGAATCGCCGCCGGACGAGGTCATGGCCGATGGCTCGGACTCCAGAAAGCCGAGACTGTTCATCAGGGAAATGGTTTTGAGGAACTTCAAGTCTTATGCCGGGGAACAGCGCGTTGGTCCTTTCCACAAGAGCTTTTCTGCTGTTGTTGGACCTAATGGGAGTGGGAAGAGCAACGTTATAGATGCAATGCTCTTTGTATTCGGAAAACGAGCTAAGCAGATGCGACTTAACAGAGTTTCGGAGCTCATTCATAACTCCCCTAATTGCCAGAATATAGATAGTGCTGGAGTTTCTGTTCATTTCCAGGAGATCATGGATTTGGATGATGGGACGTTTGAAGCTGTTCCAGGAAGTGATTTTGTAATCACTAGGGTAGCGTATCGGGATAACTCCTCCAAGTATTACATCAATGATCGTTCAAGCAATTTCACTGAAGTTACCAAGAATCTGAAAGGGAAAGTAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTGAAGTTGAGCAGATCTCACTCATGAAGCCAAAAGCTCAAGGATCTCAGGATGAAGGCTTCCTCGAGTACCTTGAGGACATTATTGGGACCAGCAAATATGTCCAAAAAATTGATGAATCTTATCAAGAGTATGCTCTAGTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

231

Amino Acids

26.2

Weight (kDa)

5.49

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	36 - 170	4.1e-35	RecF/RecN/SMC N terminal domain
AAA_15	PF13175	37 - 143	2.4e-07	AAA ATPase domain
AAA_29	PF13555	39 - 95	1.3e-06	P-loop containing region of AAA domain
AAA_23	PF13476	40 - 200	2.9e-11	AAA domain
AAA_21	PF13304	61 - 84	1.9e-06	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	56
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	2 cut(s)	501, 527
AfaI	GTAC	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	136, 386, 468
AjnI	CCWGG	3 cut(s)	351, 394, 516
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AloI	GAACNNNNNNTCC	2 cut(s)	327, 359
AluBI	AGCT	5 cut(s)	180, 260, 292, 389, 584
AluI	AGCT	5 cut(s)	180, 260, 292, 389, 584
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	164, 197, 636
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	3 cut(s)	164, 197, 636
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	3 cut(s)	40, 71, 368
BciT130I	CCWGG	3 cut(s)	353, 396, 518
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	417, 686
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	1 cut(s)	56
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	4 cut(s)	148, 353, 396, 518
Bme18I	GGWCC	3 cut(s)	164, 197, 636
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	3 cut(s)	164, 197, 636
BmiI	GGNNCC	1 cut(s)	637
BmrFI	CCNGG	4 cut(s)	148, 353, 396, 518
BmsI	GCATC	2 cut(s)	220, 258
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	2 cut(s)	73, 354
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	570, 641
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	3 cut(s)	353, 396, 518
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	3 cut(s)	51, 376, 604
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	3 cut(s)	29, 59, 147
BslFI	GGGAC	2 cut(s)	391, 649
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	2 cut(s)	391, 649
BsnI	GGCC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	357, 460, 561, 590
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	4 cut(s)	357, 460, 561, 590
Bst2UI	CCWGG	3 cut(s)	353, 396, 518
Bst4CI	ACNGT	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	261, 594
BstF5I	GGATG	3 cut(s)	51, 376, 604
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	4 cut(s)	360, 463, 564, 593
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	357, 460, 561, 590
BstNI	CCWGG	3 cut(s)	353, 396, 518
BstSCI	CCNGG	4 cut(s)	146, 351, 394, 516
BstUI	CGCG	1 cut(s)	159
BstX2I	RGATCY	2 cut(s)	561, 590
BstYI	RGATCY	2 cut(s)	561, 590
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	51, 376, 604
BtsIMutI	CAGTG	1 cut(s)	477
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	3 cut(s)	164, 197, 636
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	3 cut(s)	70, 361, 571
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	2 cut(s)	261, 594
DpnI	GATC	4 cut(s)	359, 462, 563, 592
DpnII	GATC	4 cut(s)	357, 460, 561, 590
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	3 cut(s)	164, 197, 636
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	501, 527
Eco88I	CYCGRG	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	292
EcoRII	CCWGG	3 cut(s)	351, 394, 516
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	3 cut(s)	73, 364, 574
FaiI	YATR	9 cut(s)	71, 144, 227, 300, 323, 362, 572, 648, 681
FaqI	GGGAC	2 cut(s)	391, 649
FatI	CATG	3 cut(s)	69, 360, 570
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	3 cut(s)	58, 383, 611
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	417, 686
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	2 cut(s)	73, 354
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	3 cut(s)	29, 59, 147
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	73, 364, 574
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	6 cut(s)	8, 50, 86, 493, 538, 665
HpaII	CCGG	3 cut(s)	29, 59, 147
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	4 cut(s)	85, 251, 289, 498
Hpy188III	TCNNGA	6 cut(s)	90, 431, 535, 571, 596, 674
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	2 cut(s)	7, 596
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	2 cut(s)	222, 380
HpyCH4V	TGCA	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	261, 594
HpySE526I	ACGT	2 cut(s)	222, 380
Hsp92II	CATG	3 cut(s)	73, 364, 574
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	357, 460, 561, 590
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	289
LweI	GCATC	2 cut(s)	220, 258
MaeI	CTAG	2 cut(s)	417, 686
MaeII	ACGT	2 cut(s)	222, 380
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	4 cut(s)	359, 462, 563, 592
MboI	GATC	4 cut(s)	357, 460, 561, 590
MboII	GAAGA	2 cut(s)	226, 533
MflI	RGATCY	2 cut(s)	561, 590
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	3 cut(s)	310, 472, 657
MlyI	GAGTC	2 cut(s)	17, 80
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	6 cut(s)	31, 58, 120, 451, 616, 620
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	1 cut(s)	276
MspI	CCGG	3 cut(s)	29, 59, 147
MspR9I	CCNGG	4 cut(s)	148, 353, 396, 518
MvaI	CCWGG	3 cut(s)	353, 396, 518
MvnI	CGCG	1 cut(s)	159
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	4 cut(s)	357, 460, 561, 590
NlaIII	CATG	3 cut(s)	73, 364, 574
NlaIV	GGNNCC	1 cut(s)	637
NmeAIII	GCCGAG	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	611
PagI	TCATGA	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	4 cut(s)	50, 493, 538, 665
PflFI	GACNNNGTC	1 cut(s)	65
PfoI	TCCNGGA	2 cut(s)	351, 394
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	2 cut(s)	16, 80
PpsI	GAGTC	2 cut(s)	16, 80
Psp124BI	GAGCTC	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	351, 394, 516
PspGI	CCWGG	3 cut(s)	351, 394, 516
PspN4I	GGNNCC	1 cut(s)	637
PspPI	GGNCC	3 cut(s)	164, 197, 636
PspXI	VCTCGAGB	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	561, 590
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	4 cut(s)	357, 460, 561, 590
Sau96I	GGNCC	3 cut(s)	164, 197, 636
SchI	GAGTC	2 cut(s)	17, 80
ScrFI	CCNGG	4 cut(s)	148, 353, 396, 518
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	220, 258
Sfr274I	CTCGAG	1 cut(s)	611
SinI	GGWCC	3 cut(s)	164, 197, 636
SlaI	CTCGAG	1 cut(s)	611
SmlI	CTYRAG	3 cut(s)	585, 611, 620
SmoI	CTYRAG	3 cut(s)	585, 611, 620
Sse9I	AATT	3 cut(s)	310, 472, 657
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	417, 686
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	4 cut(s)	146, 351, 394, 516
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	2 cut(s)	225, 383
TaqI	TCGA	2 cut(s)	11, 612
TasI	AATT	3 cut(s)	310, 472, 657
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	4 cut(s)	50, 493, 538, 665
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	484
TspDTI	ATGAA	8 cut(s)	17, 97, 287, 335, 587, 615, 678, 680
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	3 cut(s)	164, 197, 636
XhoI	CTCGAG	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	417, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.