Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

5371392 .. 5372070

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28940

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCTCTTTGTATTTGGAAAACGAGCTAAGCAGGATGATGGAGAATTGAAAGTTGTTCCAGGAAGTGATTTTGTAATTACAAGAATAGCATATCGGAATAACACCTCCAAATATTACATCAATGACCATGCAAGTAATTTCACTCTAGTTACCAAGAAACTGGAAGGGAAAGGAGTCGACTTAGACAACAATCCTTTTTTGATTCTTCAGGTCGTTATTAGAGATTCTGCTCTTCTAGTTTGTCTAAGGTTGCCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

86

Amino Acids

9.78

Weight (kDa)

9.17

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	60
BfaI	CTAG	2 cut(s)	146, 236
BlpI	GCTNAGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	165
Bsp1720I	GCTNAGC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	27, 181, 245
BstF5I	GGATG	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	40
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	1 cut(s)	26
CviKI_1	RGCY	1 cut(s)	26
DdeI	CTNAG	3 cut(s)	27, 181, 245
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	131
FaiI	YATR	3 cut(s)	91, 129, 256
FatI	CATG	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	177
FokI	GGATG	1 cut(s)	47
FspBI	CTAG	2 cut(s)	146, 236
Hin1II	CATG	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	174, 202, 224
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	27, 181, 245
Hsp92II	CATG	1 cut(s)	131
LguI	GCTCTTC	1 cut(s)	237
LpnPI	CCDG	5 cut(s)	17, 45, 72, 146, 194
MaeI	CTAG	2 cut(s)	146, 236
MaeIII	GTNAC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	197, 224
MluCI	AATT	3 cut(s)	44, 75, 136
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	1 cut(s)	115
MseI	TTAA	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
NlaIII	CATG	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	202, 224
PfoI	TCCNGGA	1 cut(s)	58
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	259
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	4 cut(s)	28, 107, 213, 251
Sse9I	AATT	3 cut(s)	44, 75, 136
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	2 cut(s)	146, 236
StyD4I	CCNGG	1 cut(s)	58
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	44, 75, 136
TfiI	GAWTC	2 cut(s)	202, 224
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	146, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.