Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

45569680 .. 45572477

Gene Structure 2798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCGACTTAACAGAGTTTCGGAGCTCATTCATAACTCCCCTAATTGCCAGAATATAGATGGTGCTGGAGTTTCTGTTCATTTCCAGGAGATCATGGATTTGGATGATGGGACGTTTGAAGCTGTTCCAGGAAGTGATTTTGTAATCACTAGGGTAGCGTATCGGGATAACTCCTCCAAGTATTACATCAATGATCGTTCAAGCAATTTCACTGAAGTTACCAAGAATCTGAAAGGGAAAGGAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTGAAGTTGAGCAGATCTCACTCATGAAGCCAAAAGCTCAAGGATCTCAGGATGAAGGCTTCCTCGAGTACCTTGAGGACATTATCGGGACCAGCAAATATGCCCAAAAAATTGATGAATCTTATCAAGAGCTAGAGTCCCTCAATGAGAAAAGATCCGGTGTCGTGCAAATGGTTAAGCTGGCAGAGAAAGAAAGAGATGGCTTGGAGGATGGGAAGAATGAAGCGGAAACTTACATGCTGAAAGAGTTGTCACTTCTGAAGTGGCAACAGCAAGCCACAAAACTGGCTCATGAAGATACCTCTGCCAAAATGCTTGATCTACAGGAAAATATAACCAGCTTAGAAGAAAATCTGAACAACGATAGGGAGAAGATCCAGATTGAGACTGGCCAGCAAACTATAAAGGAGTTGAGGAAAGCGATTCAAGATTCAAAGAAGAAGTATGAACGACATAACAAGGAGAACGAAACGTTATGTGCCAATTTCAAAGAAAAGGAAGAGAAGGCATCTCTAGTTCAAGAGAACTACGAGGAAACACAGAAGATGATTGATGAACATAAAGCTGTGTTGGATAAAGCAAAATCTGAGTATTGCAATATGAAAAAGACTGTGTATGAATTGCGGGCATGGAAGGATAAAGCTGAGTTTGAACTAGAAGCTATGAAGAAGAAATCCAAGGATCTGAAATTTGAGTGGAAGGCTTACAAGGACAAGCTTGATAAGTTGCAAACTGCCCTTATAAAGCATATGGATCAAATTCAGAAAGATTTAGTGGAATCTGAAAAGGTTCAAGCAACCTTGGCAGATGAACATCTTAATAGTTGTTGCGACCTTCAAAGGGCCATTGAAACGGCAGCACTTCTAGAAGCACAAATGAAAGAGATGAATCCAAATCTTGATTCAATCTCAGAGTACCAGAGAAAGGTCTCATTGTATAACGAAAAAGTGGAGGATCTGAGTATTATCACAAAACAGCGTGATGACATAAAGAGGCAGTATGATGAATTGAGAAAGAAGAGGCATGTCACATTTTTGTTTATATTTTATGGTTGCATGCTCTGTAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

450

Amino Acids

52.42

Weight (kDa)

5.34

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
AciI	CCGC	2 cut(s)	506, 904
AclI	AACGTT	1 cut(s)	752
AclWI	GGATC	6 cut(s)	331, 429, 649, 969, 1041, 1242
AcoI	YGGCCR	1 cut(s)	670
AcsI	RAATTY	2 cut(s)	968, 1038
AcuI	CTGAAG	3 cut(s)	234, 260, 560
AfaI	GTAC	2 cut(s)	350, 1196
AfiI	CCNNNNNNNGG	2 cut(s)	1120, 1204
AjnI	CCWGG	3 cut(s)	84, 127, 249
AjuI	GAANNNNNNNTTGG	2 cut(s)	1165, 1197
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	659, 1213
AlwI	GGATC	6 cut(s)	331, 429, 649, 969, 1041, 1242
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	670, 1122
ApeKI	GCWGC	1 cut(s)	1136
ApoI	RAATTY	2 cut(s)	968, 1038
Asp700I	GAANNNNTTC	2 cut(s)	123, 1068
AspS9I	GGNCC	2 cut(s)	369, 1122
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	1148
BccI	CCATC	4 cut(s)	53, 101, 473, 485
BceAI	ACGGC	1 cut(s)	1149
BciT130I	CCWGG	3 cut(s)	86, 129, 251
BcoDI	GTCTC	2 cut(s)	659, 1213
BfaI	CTAG	5 cut(s)	150, 413, 794, 935, 1145
BfmI	CTRYAG	1 cut(s)	602
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	1 cut(s)	1137
BlsI	GCNGC	1 cut(s)	1138
Bme1390I	CCNGG	3 cut(s)	86, 129, 251
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	369, 1122
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	3 cut(s)	86, 129, 251
BmsI	GCATC	1 cut(s)	797
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	303, 374
BsaBI	GATNNNNATC	1 cut(s)	1092
BsaI	GGTCTC	1 cut(s)	1213
BsaJI	CCNNGG	2 cut(s)	957, 1080
BsaWI	WCCGGW	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	1120, 1204
Bse1I	ACTGG	2 cut(s)	570, 673
Bse8I	GATNNNNATC	1 cut(s)	1092
BseBI	CCWGG	3 cut(s)	86, 129, 251
BseDI	CCNNGG	2 cut(s)	957, 1080
BseGI	GGATG	3 cut(s)	109, 337, 496
BseJI	GATNNNNATC	1 cut(s)	1092
BseLI	CCNNNNNNNGG	2 cut(s)	1120, 1204
BseMII	CTCAG	5 cut(s)	341, 858, 915, 1203, 1229
BseNI	ACTGG	2 cut(s)	570, 673
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	1148
BshFI	GGCC	2 cut(s)	672, 1124
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	3 cut(s)	124, 382, 403
BslI	CCNNNNNNNGG	2 cut(s)	1120, 1204
BsmAI	GTCTC	2 cut(s)	659, 1213
BsmFI	GGGAC	3 cut(s)	124, 382, 403
BsnI	GGCC	2 cut(s)	672, 1124
Bso31I	GGTCTC	1 cut(s)	1213
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	506, 904
BspANI	GGCC	2 cut(s)	672, 1124
BspCNI	CTCAG	5 cut(s)	340, 859, 916, 1202, 1230
BspHI	TCATGA	2 cut(s)	303, 571
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	6 cut(s)	331, 429, 649, 969, 1041, 1242
BspTNI	GGTCTC	1 cut(s)	1213
BsrI	ACTGG	2 cut(s)	570, 673
BssECI	CCNNGG	2 cut(s)	957, 1080
BssT1I	CCWWGG	2 cut(s)	957, 1080
Bst2UI	CCWGG	3 cut(s)	86, 129, 251
Bst4CI	ACNGT	1 cut(s)	892
Bst6I	CTCTTC	2 cut(s)	774, 1292
BstC8I	GCNNGC	5 cut(s)	462, 555, 674, 906, 1337
BstDEI	CTNAG	6 cut(s)	327, 622, 867, 924, 1189, 1238
BstF5I	GGATG	3 cut(s)	109, 337, 496
BstMAI	GTCTC	2 cut(s)	659, 1213
BstMWI	GCNNNNNNNGC	1 cut(s)	1082
BstNI	CCWGG	3 cut(s)	86, 129, 251
BstNSI	RCATGY	3 cut(s)	520, 1307, 1339
BstSCI	CCNGG	3 cut(s)	84, 127, 249
BstSFI	CTRYAG	1 cut(s)	602
BstV1I	GCAGC	1 cut(s)	1148
BstX2I	RGATCY	6 cut(s)	294, 323, 434, 654, 961, 1234
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	6 cut(s)	294, 323, 434, 654, 961, 1234
BsuRI	GGCC	2 cut(s)	672, 1124
BtsCI	GGATG	3 cut(s)	109, 337, 496
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	5 cut(s)	462, 555, 674, 906, 1337
CciI	TCATGA	2 cut(s)	303, 571
Cfr13I	GGNCC	2 cut(s)	369, 1122
Csp6I	GTAC	2 cut(s)	349, 1195
CviAII	CATG	7 cut(s)	94, 304, 517, 572, 909, 1304, 1336
CviQI	GTAC	2 cut(s)	349, 1195
DdeI	CTNAG	6 cut(s)	327, 622, 867, 924, 1189, 1238
EaeI	YGGCCR	1 cut(s)	670
Eam1104I	CTCTTC	2 cut(s)	774, 1292
EarI	CTCTTC	2 cut(s)	774, 1292
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	957, 1080
Eco24I	GRGCYC	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	1213
Eco47I	GGWCC	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	234, 260, 560
Eco88I	CYCGRG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	3 cut(s)	84, 127, 249
EcoT14I	CCWWGG	2 cut(s)	957, 1080
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	957, 1080
FaeI	CATG	7 cut(s)	97, 307, 520, 575, 912, 1307, 1339
FaqI	GGGAC	3 cut(s)	124, 382, 403
FatI	CATG	7 cut(s)	93, 303, 516, 571, 908, 1303, 1335
FauI	CCCGC	1 cut(s)	897
FauNDI	CATATG	1 cut(s)	1029
Fnu4HI	GCNGC	1 cut(s)	1137
FokI	GGATG	3 cut(s)	116, 344, 503
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	1137
FspBI	CTAG	5 cut(s)	150, 413, 794, 935, 1145
GluI	GCNGC	1 cut(s)	1137
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	672, 1124
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	7 cut(s)	97, 307, 520, 575, 912, 1307, 1339
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	9 cut(s)	226, 271, 398, 416, 703, 710, 1058, 1168, 1181
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	5 cut(s)	329, 778, 907, 973, 1124
HpyCH4III	ACNGT	1 cut(s)	892
HpyCH4IV	ACGT	2 cut(s)	113, 752
HpyCH4V	TGCA	4 cut(s)	448, 876, 1009, 1335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1082
HpyF3I	CTNAG	6 cut(s)	327, 622, 867, 924, 1189, 1238
HpySE526I	ACGT	2 cut(s)	113, 752
Hsp92II	CATG	7 cut(s)	97, 307, 520, 575, 912, 1307, 1339
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	1148
LweI	GCATC	1 cut(s)	797
MaeI	CTAG	5 cut(s)	150, 413, 794, 935, 1145
MaeII	ACGT	2 cut(s)	113, 752
MaeIII	GTNAC	3 cut(s)	217, 531, 1306
MflI	RGATCY	6 cut(s)	294, 323, 434, 654, 961, 1234
MhlI	GDGCHC	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	672
MluCI	AATT	8 cut(s)	43, 205, 390, 763, 899, 968, 1038, 1286
MluNI	TGGCCA	1 cut(s)	672
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	831
Mox20I	TGGCCA	1 cut(s)	672
MroXI	GAANNNNTTC	2 cut(s)	123, 1068
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	3 cut(s)	9, 456, 1098
Msp20I	TGGCCA	1 cut(s)	672
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	3 cut(s)	86, 129, 251
MvaI	CCWGG	3 cut(s)	86, 129, 251
MwoI	GCNNNNNNNGC	1 cut(s)	1082
NdeI	CATATG	1 cut(s)	1029
NlaIII	CATG	7 cut(s)	97, 307, 520, 575, 912, 1307, 1339
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	531, 1306
NspI	RCATGY	3 cut(s)	520, 1307, 1339
PaeI	GCATGC	1 cut(s)	1339
PaeR7I	CTCGAG	1 cut(s)	344
PagI	TCATGA	2 cut(s)	303, 571
PdmI	GAANNNNTTC	2 cut(s)	123, 1068
PfeI	GAWTC	8 cut(s)	226, 271, 398, 703, 710, 1058, 1168, 1181
PfoI	TCCNGGA	2 cut(s)	84, 127
PkrI	GCNGC	1 cut(s)	1138
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PsiI	TTATAA	1 cut(s)	1022
Psp124BI	GAGCTC	1 cut(s)	27
Psp1406I	AACGTT	1 cut(s)	752
Psp6I	CCWGG	3 cut(s)	84, 127, 249
PspGI	CCWGG	3 cut(s)	84, 127, 249
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	369, 1122
PspXI	VCTCGAGB	1 cut(s)	344
PsuI	RGATCY	6 cut(s)	294, 323, 434, 654, 961, 1234
RsaI	GTAC	2 cut(s)	350, 1196
RsaNI	GTAC	2 cut(s)	349, 1195
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	9, 456, 1098
SatI	GCNGC	1 cut(s)	1137
Sau96I	GGNCC	2 cut(s)	369, 1122
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	3 cut(s)	86, 129, 251
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	797
SfcI	CTRYAG	1 cut(s)	602
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	3 cut(s)	318, 344, 353
SmoI	CTYRAG	3 cut(s)	318, 344, 353
SphI	GCATGC	1 cut(s)	1339
Sse9I	AATT	8 cut(s)	43, 205, 390, 763, 899, 968, 1038, 1286
SsiI	CCGC	2 cut(s)	506, 904
SspI	AATATT	1 cut(s)	1348
SspMI	CTAG	5 cut(s)	150, 413, 794, 935, 1145
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	84, 127, 249
StyI	CCWWGG	2 cut(s)	957, 1080
TaaI	ACNGT	1 cut(s)	892
TaiI	ACGT	2 cut(s)	116, 755
TaqI	TCGA	1 cut(s)	345
TasI	AATT	8 cut(s)	43, 205, 390, 763, 899, 968, 1038, 1286
TfiI	GAWTC	8 cut(s)	226, 271, 398, 703, 710, 1058, 1168, 1181
Tru1I	TTAA	3 cut(s)	9, 456, 1098
Tru9I	TTAA	3 cut(s)	9, 456, 1098
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	531, 1306
TseI	GCWGC	1 cut(s)	1136
Tsp45I	GTSAC	2 cut(s)	531, 1306
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	2 cut(s)	968, 1038
XbaI	TCTAGA	1 cut(s)	1144
XceI	RCATGY	3 cut(s)	520, 1307, 1339
XcmI	CCANNNNNNNNNTGG	2 cut(s)	56, 665
XhoI	CTCGAG	1 cut(s)	344
XmnI	GAANNNNTTC	2 cut(s)	123, 1068
XspI	CTAG	5 cut(s)	150, 413, 794, 935, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.