Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

45594880 .. 45603589

Gene Structure 8710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3708 bp

ATGGAACCGCCGCCGGACGAGTTCATGGCCGATGGGTCCGACTCCAGAAAGCCGAGGCTGTTCATCAGGGAAATGGTTTTGAGGAACTTCAAGTCTTATGCCGGGGAACAGCGCGTTGGTCCTTTCCACAAGAGCTTTTCTGCTGTTGTTGGACCTAATGGGAGTGGGAAGAGCAACGTTATAGATGCAATGCTCTTTGTATTCGGAAAACGAGCTAAGCAGATGCGACTTAACAGAGTTTCGGAGCTCATTCATAACTCCCCTAATTGCCAGAATATAGATAGTGCTGGAGTTTCTGTTCATTTCCAGGAGATCATGGATTTGGATGATGGGACGTTTGAAGCTGTTCCAGGAAGTGATTTTGTAATCACTAGGGTAGCGTATCGGGATAACTCCTCCAAGTATTACATCAATGATCGTTCAAGCAATTTCACTGAAGTTACCAAGAATCTGAAAGGGAAAGGAGTTGACCTGGACAACAATCGCTTCTTGATTCTTCAGGGTGAAGTTGAGCAGATCTCACTCATGAAGCCAAAAGCTCAAGGATCTCAGGATGAAGGCTTCCTCGAGTACCTTGAGGACATTATCGGGACCAGCAAATATGCCCAAAAAATTGATGAATCTTATCAAGAGCTAGAGTCCCTCAATGAGAAAAGATCCGGTGTCGTGCAAATGGTTAAGCTGGCAGAGAAAGAAAGAGATGGCTTGGAGGATGGGAAGAATGAAGCGGAAACTTACATGCTGAAAGAGTTGTCACTTCTAAAGTGGCAAGAGAAAGCCACAAAACTGGCTCATGAAGATACCTCTGCCAAAATGCTTGATCTACAGGAAAATATAACCAGCTTAGAAGAAAATCTGAACAACGATAGGGAGAAGATCCAGGAGCGTAATAATGCACTGAAGGAGCTTGAATCTACGTACGATAAGGATATGAAACAACAAGAGGAATTATATATCGCCCTCAACAGATATAAGGATGAATTTAAGCATCTTGAAAAGGAGCGTGCAAAATATCTGGTGAATCTGCAATATGTGGAGCAGAAGATCAAGAAACTCGATGAAAAACTTGAAAAGGATTCATTAAAGATTGGTGACAGAGAGAGGGACTGTGAGAACTCGATTAGTCAGATCCCAGAACTTGAGAAAAGTATTCGCCAACTGCAAAAACTCTTGTTGGATGAAGAAAAAGTCCTGGAGGAAATTATTGAGGATTCCAAAGGGGATACAGAAACATATTGCTGTGAGCTTACAACAGTTCGTTCCAGATTAGAACCTTGGGAAAAACAACCGATTGAGCACCGGAAGAAATTTGATGTTGCATATACTGAACGCAAGCTTTTGGATGAAAAGCATCAAGCTGGTCGTGCAGCTTTTGAAGACGCTCGAAAGCAGATGGATGATATATGGGGACTGATACAAACAAAAACTGCAGACATTACAAAAATTCGGAATGAGCTAGAAAAGAGCAAGTTCGAAAGGACGGAATACCGTAAAGCCGAACAGGAATACATCAAAGAACAAGAAGCTCTCATACCTTGTGAACAAGCTGCAAGACAGAAGGTTGCAGAACTCAAGCATCTTCTGGATTCTGAAAAGAGTAGGGGAAGACTTTTAAAAGCAATTTTACATGCTAAGTTGTCCAACCGGATACCGGGAATACATGGCCGACTGGGCGATTTAGGTGCTATTGATGAGCAATATGATGTTGCCATATCAACGGCTTGCCCTGGACTTGACAATATTGTGGTGGAAACAACTGATGGAGCAATAGCTTGTGTTGAGCTACTCCGAAGGGAGAATCTTGGTGTTGCTAATTTCATGATAATGGAAAAGATCACTGATCGTTTACCAGTGAGGAAGGAGAATGTAAGAACTCCAGAAGGAGTTCCACACCTTTTCGATCTAGTTAGGGTTGAGGACCAGAGAATGAAAGTTGCTTTCTTTAAAGCATTGAAGAATACCGTTGTAGCTAAAGATCTAGATCAGGCAGCACGTATTGCATATGGAGGAAACCCCAGATTTCGAGCGGTAACACTTGATGGTGCACTATTTGAAATATCTGGTACAATGACTGGTGGTGGAAGTAAGCCATGTGGTGGTAAGATTGGCCGATCTATATGTACTACTGTAGTGTCAGAAGAAGCTGTTACAGATGCCAGCAGGGAGCTTGCCAGCATGACAGATAAATTAAACCATATCCGCCAACATATTGCTGACGCAGCAAAGAGATATCAAGCCTCTGAAGATGCAATTGCACACTGGGAGTTGGAATTAGCTAAAAGCCAGAAAGAGATTGACAGTTTGAGTTCACAACATAGTTATCTTGAAATGCAAATTGGTTCCTTGGAGGCTGCATCACAGCCGAAGAAGGATGAGGTTGATCAGCTAAGAAAACTCGATAGTATCATTTCTGCTGAAGGAAATAAGATCGACGAACTCATCCAAGGATCTAAGCAGCTTAAGGAAAAGGTCCTGGAGCTTCAGCATAACATAGAAAATGCTGGTGGTGAAAGTTTAAAAGTACAGAAGTCAAAGGTCAATAAGATTAAGTCTGATATTGATGAAAAGAACACTGAACTCAACCGCCACAAAGTCCAAATTGAGACTGGCCAGCAAACTATAAAGGAGTTGAGAAAAGTGATTCAAGATTCAAAGAAGAAGTATGAACGACATAAAAAGGAGAACGAAACGTTATGTGCCAATTTCAAAGAAAAGGAAGAGAAGGCATCTCTAGTTCAAGAGAACTACGAGGAAACACAGAAGCTGATTGATGAACATAAAGCTGTGTTGGATAAAGCAAAATCTGAGTATTGCAATATGAAAAAGACTGTGTACGAATTGCGGGCATGGAAGGATAAAGCTGAGTTTGAACTAGAAGCTATGAAGAAGAAATACAAGGATCTGAAATTTGAGTGGAAGGCTTACAAGGACAAGCTTGATAAGTTGCAAACTGCCCTTATAAAGCATATGGATCAAATTCAGAAAGATTTAGTGGAATCTGAAAAGGTTCAAGCAACCTTGGCAGATGAACATCTTAATAGTTGTTGCGACCTTCAAAGGGCCATTGAAACGGCAGCACTTCTAGAAGCACAAATGAAAGAGATGAATCCAAATCTTGATTCAATCTCAGAGTACCAGAGAAAGATCTCATTGTATAACGAAAGAGTGGAGGATCTGAGTATTATCACAAAACAGCGTGATGACATAAAGAGGCAGTATGATGAATTGAGAAGGAAGAGGCATGTCACATTTTTGTTGGATGACTTCATGGGAGGATTTAATGCAATATCTTTGAAGTTAAAAGAAATGTATCAGATGATCACGCTGGGAGGTGACGCAGAACTTGAGCTAGTCGACTCCTTGGATCCTTTCTCTGAAGGTGTTGTCTTCAGCGTTAGACCACCAAAGAAGAGTTGGAAGAATATTTCAAACTTATCTGGTGGTGAAACGACATTGAGCTCATTGGCTCTTGTGTTTGCACTGCATCATTACAAGCCTACACCTCTTTATGTGATGGATGAAATTGATGCTGCCTTAGGTACTTTTGAGCTGAATTCCTGTTGTTATCATCTGAATTTATTCCTTAGAAATAACATGTTTGAGTTAGCGGATCGACTTGTGGGGATATACAAAACTCATAATCGCACTAAGAGTATTACCATTGACCCAAGGAGTTTTGTGATCTGCAATGAAGCTGCTCAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1235

Amino Acids

141.53

Weight (kDa)

5.79

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	21 - 1216	1.6e-48	RecF/RecN/SMC N terminal domain
AAA_15	PF13175	22 - 383	4.8e-06	AAA ATPase domain
AAA_23	PF13476	25 - 300	3.3e-10	AAA domain
SMC_hinge	PF06470	551 - 667	5.4e-22	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2960
AccB7I	CCANNNNNTGG	1 cut(s)	2096
AccBSI	CCGCTC	1 cut(s)	2027
AccI	GTMKAC	1 cut(s)	3354
AccII	CGCG	1 cut(s)	114
AciI	CCGC	8 cut(s)	8, 11, 728, 2027, 2200, 2584, 2842, 3608
AclI	AACGTT	2 cut(s)	177, 2690
AcoI	YGGCCR	4 cut(s)	27, 1663, 2107, 2608
AcsI	RAATTY	7 cut(s)	980, 1307, 1443, 2906, 2976, 3553, 3574
AcuI	CTGAAG	8 cut(s)	456, 482, 920, 2262, 2436, 2465, 3373, 3396
AfaI	GTAC	8 cut(s)	572, 920, 2065, 2122, 2523, 2834, 3134, 3541
AfiI	CCNNNNNNNGG	3 cut(s)	1651, 2096, 3058
AflII	CTTAAG	1 cut(s)	2459
AflIII	ACRYGT	1 cut(s)	3594
AjnI	CCWGG	7 cut(s)	306, 349, 471, 879, 1191, 1726, 2472
AjuI	GAANNNNNNNTTGG	6 cut(s)	99, 131, 2319, 2351, 3103, 3135
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
Alw21I	GWGCWC	4 cut(s)	249, 1299, 2047, 3461
Alw26I	GTCTC	1 cut(s)	2597
Alw44I	GTGCAC	1 cut(s)	2043
AlwNI	CAGNNNCTG	1 cut(s)	2764
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	6 cut(s)	27, 1663, 2107, 2608, 3060, 3702
ApaLI	GTGCAC	1 cut(s)	2043
ApeKI	GCWGC	9 cut(s)	1367, 1547, 1988, 2219, 2351, 2455, 3074, 3530, 3695
ApoI	RAATTY	7 cut(s)	980, 1307, 1443, 2906, 2976, 3553, 3574
Asp700I	GAANNNNTTC	4 cut(s)	345, 1884, 3006, 3578
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	7 cut(s)	36, 119, 152, 591, 1918, 2470, 3060
AsuC2I	CCSGG	2 cut(s)	103, 1653
AsuHPI	GGTGA	6 cut(s)	515, 1030, 1103, 2519, 3344, 3455
AsuII	TTCGAA	1 cut(s)	1473
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	6 cut(s)	36, 119, 152, 591, 1918, 2470
AxyI	CCTNAGG	1 cut(s)	3535
BaeGI	GKGCMC	1 cut(s)	2047
BalI	TGGCCA	1 cut(s)	2610
BamHI	GGATCC	1 cut(s)	3364
BanII	GRGCYC	2 cut(s)	249, 3461
BarI	GAAGNNNNNNTAC	4 cut(s)	1515, 1547, 2876, 2908
BbsI	GAAGAC	3 cut(s)	1383, 1612, 3379
Bbv12I	GWGCWC	4 cut(s)	249, 1299, 2047, 3461
BbvI	GCAGC	9 cut(s)	1379, 1534, 2000, 2231, 2338, 2467, 3086, 3517, 3682
BccI	CCATC	8 cut(s)	26, 323, 695, 707, 1387, 1754, 2033, 3508
BceAI	ACGGC	2 cut(s)	1734, 3087
BcgI	CGANNNNNNTGC	2 cut(s)	1664, 1698
BciT130I	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
BciVI	GTATCC	2 cut(s)	1216, 1641
BclI	TGATCA	2 cut(s)	2380, 3318
BcnI	CCSGG	2 cut(s)	103, 1653
BcoDI	GTCTC	1 cut(s)	2597
BfaI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3350
BfmI	CTRYAG	3 cut(s)	824, 1428, 2127
BfrI	CTTAAG	1 cut(s)	2459
BfuI	GTATCC	2 cut(s)	1216, 1641
BglI	GCCNNNNNGGC	1 cut(s)	1671
BglII	AGATCT	3 cut(s)	516, 1975, 3144
BlpI	GCTNAGC	1 cut(s)	216
Bme1390I	CCNGG	9 cut(s)	103, 308, 351, 473, 881, 1193, 1653, 1728, 2474
Bme18I	GGWCC	6 cut(s)	36, 119, 152, 591, 1918, 2470
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	7 cut(s)	36, 119, 152, 591, 1918, 2470, 3060
BmiI	GGNNCC	5 cut(s)	6, 37, 592, 2341, 3366
BmrFI	CCNGG	9 cut(s)	103, 308, 351, 473, 881, 1193, 1653, 1728, 2474
BmrI	ACTGGG	2 cut(s)	1679, 2269
BmuI	ACTGGG	2 cut(s)	1679, 2269
BpiI	GAAGAC	3 cut(s)	1383, 1612, 3379
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	5 cut(s)	28, 309, 1214, 1860, 2495
Bpu10I	CCTNAGC	1 cut(s)	3699
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	1473
BpuEI	CTTGAG	5 cut(s)	525, 596, 1160, 1556, 3365
BpuMI	CCSGG	2 cut(s)	103, 1653
BsaAI	YACGTR	2 cut(s)	918, 1994
BsaBI	GATNNNNATC	2 cut(s)	1980, 3030
BsaJI	CCNNGG	9 cut(s)	53, 102, 1274, 1726, 2343, 2443, 3018, 3360, 3668
BsaWI	WCCGGW	3 cut(s)	659, 1299, 1644
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	1651, 2096, 3058
Bse1I	ACTGG	6 cut(s)	792, 1674, 1850, 2077, 2264, 2611
Bse21I	CCTNAGG	1 cut(s)	3535
Bse3DI	GCAATG	2 cut(s)	195, 3694
Bse8I	GATNNNNATC	2 cut(s)	1980, 3030
BseBI	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
BseDI	CCNNGG	9 cut(s)	53, 102, 1274, 1726, 2343, 2443, 3018, 3360, 3668
BseJI	GATNNNNATC	2 cut(s)	1980, 3030
BseLI	CCNNNNNNNGG	3 cut(s)	1651, 2096, 3058
BseMI	GCAATG	2 cut(s)	195, 3694
BseMII	CTCAG	5 cut(s)	563, 2796, 2853, 3141, 3167
BseNI	ACTGG	6 cut(s)	792, 1674, 1850, 2077, 2264, 2611
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	2047
BseXI	GCAGC	9 cut(s)	1379, 1534, 2000, 2231, 2338, 2467, 3086, 3517, 3682
BseYI	CCCAGC	1 cut(s)	3325
BsgI	GTGCAG	1 cut(s)	1386
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3704
BsiHKAI	GWGCWC	4 cut(s)	249, 1299, 2047, 3461
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	6 cut(s)	14, 102, 660, 1300, 1645, 1652
BsiWI	CGTACG	1 cut(s)	918
BslFI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
BslI	CCNNNNNNNGG	3 cut(s)	1651, 2096, 3058
BsmAI	GTCTC	1 cut(s)	2597
BsmFI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
BsnI	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3704
BsoBI	CYCGRG	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	1473
Bsp1286I	GDGCHC	4 cut(s)	249, 1299, 2047, 3461
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	8 cut(s)	8, 11, 728, 2027, 2200, 2584, 2842, 3608
BspANI	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3704
BspCNI	CTCAG	5 cut(s)	562, 2797, 2854, 3140, 3168
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	3 cut(s)	525, 793, 1818
BspLI	GGNNCC	5 cut(s)	6, 37, 592, 2341, 3366
BspMAI	CTGCAG	1 cut(s)	1432
BspQI	GCTCTTC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	1473
BspTI	CTTAAG	1 cut(s)	2459
BsrBI	CCGCTC	1 cut(s)	2027
BsrDI	GCAATG	2 cut(s)	195, 3694
BsrI	ACTGG	6 cut(s)	792, 1674, 1850, 2077, 2264, 2611
BssECI	CCNNGG	9 cut(s)	53, 102, 1274, 1726, 2343, 2443, 3018, 3360, 3668
BssT1I	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3360, 3668
Bst2UI	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
Bst4CI	ACNGT	7 cut(s)	1109, 1255, 1490, 1963, 2128, 2300, 2830
Bst6I	CTCTTC	4 cut(s)	164, 2712, 3230, 3404
BstAFI	CTTAAG	1 cut(s)	2459
BstAPI	GCANNNNNTGC	1 cut(s)	1997
BstBAI	YACGTR	2 cut(s)	918, 1994
BstBI	TTCGAA	1 cut(s)	1473
BstC8I	GCNNGC	9 cut(s)	684, 1005, 1334, 1723, 2158, 2169, 2173, 2612, 2844
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	2597
BstMWI	GCNNNNNNNGC	6 cut(s)	1364, 1671, 1997, 2219, 3020, 3701
BstNI	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
BstNSI	RCATGY	4 cut(s)	742, 1631, 3245, 3598
BstSCI	CCNGG	9 cut(s)	101, 306, 349, 471, 879, 1191, 1651, 1726, 2472
BstSFI	CTRYAG	3 cut(s)	824, 1428, 2127
BstSLI	GKGCMC	1 cut(s)	2047
BstSNI	TACGTA	1 cut(s)	918
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	9 cut(s)	1379, 1534, 2000, 2231, 2338, 2467, 3086, 3517, 3682
BstV2I	GAAGAC	3 cut(s)	1383, 1612, 3379
BstXI	CCANNNNNNTGG	1 cut(s)	787
Bsu36I	CCTNAGG	1 cut(s)	3535
BsuI	GTATCC	2 cut(s)	1216, 1641
BsuRI	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3704
BtsI	GCAGTG	1 cut(s)	3479
BtsIMutI	CAGTG	7 cut(s)	432, 896, 1836, 1857, 2257, 2571, 3479
Cac8I	GCNNGC	9 cut(s)	684, 1005, 1334, 1723, 2158, 2169, 2173, 2612, 2844
CaiI	CAGNNNCTG	1 cut(s)	2764
CciI	TCATGA	3 cut(s)	525, 793, 1818
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	7 cut(s)	36, 119, 152, 591, 1918, 2470, 3060
CseI	GACGC	3 cut(s)	1388, 2225, 3344
Csp6I	GTAC	8 cut(s)	571, 919, 2064, 2121, 2522, 2833, 3133, 3540
CviQI	GTAC	8 cut(s)	571, 919, 2064, 2121, 2522, 2833, 3133, 3540
DraI	TTTAAA	3 cut(s)	1614, 1945, 2517
EaeI	YGGCCR	4 cut(s)	27, 1663, 2107, 2608
Eam1104I	CTCTTC	4 cut(s)	164, 2712, 3230, 3404
EarI	CTCTTC	4 cut(s)	164, 2712, 3230, 3404
EciI	GGCGGA	1 cut(s)	2189
Ecl136II	GAGCTC	2 cut(s)	247, 3459
Eco105I	TACGTA	1 cut(s)	918
Eco130I	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3360, 3668
Eco147I	AGGCCT	1 cut(s)	3704
Eco24I	GRGCYC	2 cut(s)	249, 3461
Eco32I	GATATC	1 cut(s)	2231
Eco47I	GGWCC	6 cut(s)	36, 119, 152, 591, 1918, 2470
Eco53kI	GAGCTC	2 cut(s)	247, 3459
Eco57I	CTGAAG	8 cut(s)	456, 482, 920, 2262, 2436, 2465, 3373, 3396
Eco81I	CCTNAGG	1 cut(s)	3535
Eco88I	CYCGRG	1 cut(s)	566
EcoICRI	GAGCTC	2 cut(s)	247, 3459
EcoO109I	RGGNCCY	1 cut(s)	2470
EcoRI	GAATTC	1 cut(s)	3553
EcoRII	CCWGG	7 cut(s)	306, 349, 471, 879, 1191, 1726, 2472
EcoRV	GATATC	1 cut(s)	2231
EcoT14I	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3360, 3668
EcoT38I	GRGCYC	2 cut(s)	249, 3461
ErhI	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3360, 3668
FaqI	GGGAC	5 cut(s)	346, 604, 625, 1118, 1422
FauI	CCCGC	1 cut(s)	2835
FauNDI	CATATG	2 cut(s)	2002, 2967
FbaI	TGATCA	2 cut(s)	2380, 3318
FblI	GTMKAC	1 cut(s)	3354
FriOI	GRGCYC	2 cut(s)	249, 3461
FspBI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3350
GlaI	GCGC	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	3329
GsuI	CTGGAG	5 cut(s)	28, 309, 1214, 1860, 2495
HaeIII	GGCC	6 cut(s)	29, 1665, 2109, 2610, 3062, 3704
HapII	CCGG	6 cut(s)	14, 102, 660, 1300, 1645, 1652
HgaI	GACGC	3 cut(s)	1388, 2225, 3344
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	469, 3355
HindII	GTYRAC	2 cut(s)	469, 3355
HindIII	AAGCTT	2 cut(s)	1334, 2933
HpaII	CCGG	6 cut(s)	14, 102, 660, 1300, 1645, 1652
HphI	GGTGA	6 cut(s)	515, 1030, 1103, 2519, 3344, 3455
Hpy166II	GTNNAC	7 cut(s)	469, 1541, 1847, 2045, 2309, 2833, 3355
Hpy8I	GTNNAC	7 cut(s)	469, 1541, 1847, 2045, 2309, 2833, 3355
Hpy99I	CGWCG	1 cut(s)	2435
HpyCH4III	ACNGT	7 cut(s)	1109, 1255, 1490, 1963, 2128, 2300, 2830
HpyCH4IV	ACGT	5 cut(s)	177, 335, 917, 1993, 2690
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1364, 1671, 1997, 2219, 3020, 3701
HpySE526I	ACGT	5 cut(s)	177, 335, 917, 1993, 2690
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	2 cut(s)	2380, 3318
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	8 cut(s)	244, 883, 904, 1000, 1036, 1763, 2164, 2476
Lsp1109I	GCAGC	9 cut(s)	1379, 1534, 2000, 2231, 2338, 2467, 3086, 3517, 3682
MaeI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3350
MaeII	ACGT	5 cut(s)	177, 335, 917, 1993, 2690
MaeIII	GTNAC	7 cut(s)	439, 753, 1091, 2029, 2146, 3244, 3332
MbiI	CCGCTC	1 cut(s)	2027
MfeI	CAATTG	1 cut(s)	2250
MhlI	GDGCHC	4 cut(s)	249, 1299, 2047, 3461
MlsI	TGGCCA	1 cut(s)	2610
MluNI	TGGCCA	1 cut(s)	2610
MlyI	GAGTC	3 cut(s)	35, 647, 3350
MmeI	TCCRAC	8 cut(s)	63, 130, 1155, 1665, 2247, 2769, 3237, 3395
Mox20I	TGGCCA	1 cut(s)	2610
MroXI	GAANNNNTTC	4 cut(s)	345, 1884, 3006, 3578
MscI	TGGCCA	1 cut(s)	2610
MslI	CAYNNNNRTG	1 cut(s)	1823
Msp20I	TGGCCA	1 cut(s)	2610
MspCI	CTTAAG	1 cut(s)	2459
MspI	CCGG	6 cut(s)	14, 102, 660, 1300, 1645, 1652
MspR9I	CCNGG	9 cut(s)	103, 308, 351, 473, 881, 1193, 1653, 1728, 2474
MunI	CAATTG	1 cut(s)	2250
MvaI	CCWGG	7 cut(s)	308, 351, 473, 881, 1193, 1728, 2474
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	6 cut(s)	1364, 1671, 1997, 2219, 3020, 3701
NciI	CCSGG	2 cut(s)	103, 1653
NdeI	CATATG	2 cut(s)	2002, 2967
NlaIV	GGNNCC	5 cut(s)	6, 37, 592, 2341, 3366
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	4 cut(s)	753, 1091, 3244, 3332
NspI	RCATGY	4 cut(s)	742, 1631, 3245, 3598
NspV	TTCGAA	1 cut(s)	1473
PaeR7I	CTCGAG	1 cut(s)	566
PagI	TCATGA	3 cut(s)	525, 793, 1818
PceI	AGGCCT	1 cut(s)	3704
PciI	ACATGT	1 cut(s)	3594
PciSI	GCTCTTC	1 cut(s)	164
PdmI	GAANNNNTTC	4 cut(s)	345, 1884, 3006, 3578
Pfl23II	CGTACG	1 cut(s)	918
PflMI	CCANNNNNTGG	1 cut(s)	2096
PfoI	TCCNGGA	5 cut(s)	306, 349, 879, 1191, 2472
PleI	GAGTC	3 cut(s)	35, 646, 3350
PpsI	GAGTC	3 cut(s)	35, 646, 3350
Ppu21I	YACGTR	2 cut(s)	918, 1994
PpuMI	RGGWCCY	1 cut(s)	2470
PscI	ACATGT	1 cut(s)	3594
PsiI	TTATAA	1 cut(s)	2960
Psp124BI	GAGCTC	2 cut(s)	249, 3461
Psp1406I	AACGTT	2 cut(s)	177, 2690
Psp5II	RGGWCCY	1 cut(s)	2470
Psp6I	CCWGG	7 cut(s)	306, 349, 471, 879, 1191, 1726, 2472
PspFI	CCCAGC	1 cut(s)	3325
PspGI	CCWGG	7 cut(s)	306, 349, 471, 879, 1191, 1726, 2472
PspLI	CGTACG	1 cut(s)	918
PspN4I	GGNNCC	5 cut(s)	6, 37, 592, 2341, 3366
PspPI	GGNCC	7 cut(s)	36, 119, 152, 591, 1918, 2470, 3060
PspPPI	RGGWCCY	1 cut(s)	2470
PspXI	VCTCGAGB	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	1432
PstNI	CAGNNNCTG	1 cut(s)	2764
RsaI	GTAC	8 cut(s)	572, 920, 2065, 2122, 2523, 2834, 3134, 3541
RsaNI	GTAC	8 cut(s)	571, 919, 2064, 2121, 2522, 2833, 3133, 3540
RseI	CAYNNNNRTG	1 cut(s)	1823
SacI	GAGCTC	2 cut(s)	249, 3461
SalI	GTCGAC	1 cut(s)	3353
SapI	GCTCTTC	1 cut(s)	164
Sau96I	GGNCC	7 cut(s)	36, 119, 152, 591, 1918, 2470, 3060
SchI	GAGTC	3 cut(s)	35, 647, 3350
ScrFI	CCNGG	9 cut(s)	103, 308, 351, 473, 881, 1193, 1653, 1728, 2474
SduI	GDGCHC	4 cut(s)	249, 1299, 2047, 3461
SfcI	CTRYAG	3 cut(s)	824, 1428, 2127
Sfr274I	CTCGAG	1 cut(s)	566
SfuI	TTCGAA	1 cut(s)	1473
SinI	GGWCC	6 cut(s)	36, 119, 152, 591, 1918, 2470
SlaI	CTCGAG	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	1823
SmlI	CTYRAG	7 cut(s)	540, 566, 575, 1139, 1571, 2459, 3344
SmoI	CTYRAG	7 cut(s)	540, 566, 575, 1139, 1571, 2459, 3344
SnaBI	TACGTA	1 cut(s)	918
SseBI	AGGCCT	1 cut(s)	3704
SsiI	CCGC	8 cut(s)	8, 11, 728, 2027, 2200, 2584, 2842, 3608
SspI	AATATT	2 cut(s)	1741, 3424
SspMI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3350
SstI	GAGCTC	2 cut(s)	249, 3461
StuI	AGGCCT	1 cut(s)	3704
StyD4I	CCNGG	9 cut(s)	101, 306, 349, 471, 879, 1191, 1651, 1726, 2472
StyI	CCWWGG	6 cut(s)	1274, 2343, 2443, 3018, 3360, 3668
TaaI	ACNGT	7 cut(s)	1109, 1255, 1490, 1963, 2128, 2300, 2830
TaiI	ACGT	5 cut(s)	180, 338, 920, 1996, 2693
TatI	WGTACW	2 cut(s)	2120, 2521
TauI	GCSGC	1 cut(s)	13
TscAI	CASTG	7 cut(s)	439, 903, 1843, 1857, 2264, 2578, 3486
TseFI	GTSAC	4 cut(s)	753, 1091, 3244, 3332
TseI	GCWGC	9 cut(s)	1367, 1547, 1988, 2219, 2351, 2455, 3074, 3530, 3695
Tsp45I	GTSAC	4 cut(s)	753, 1091, 3244, 3332
TspGWI	ACGGA	1 cut(s)	1496
TspRI	CASTG	7 cut(s)	439, 903, 1843, 1857, 2264, 2578, 3486
Van91I	CCANNNNNTGG	1 cut(s)	2096
Vha464I	CTTAAG	1 cut(s)	2459
VneI	GTGCAC	1 cut(s)	2043
VpaK11BI	GGWCC	6 cut(s)	36, 119, 152, 591, 1918, 2470
XapI	RAATTY	7 cut(s)	980, 1307, 1443, 2906, 2976, 3553, 3574
XbaI	TCTAGA	2 cut(s)	1978, 3082
XceI	RCATGY	4 cut(s)	742, 1631, 3245, 3598
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2603, 3411
XhoI	CTCGAG	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	3354
XmnI	GAANNNNTTC	4 cut(s)	345, 1884, 3006, 3578
XspI	CTAG	9 cut(s)	372, 635, 1457, 1904, 1979, 2732, 2873, 3083, 3350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.