Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Forward (+)

60905114 .. 60913944

Gene Structure 8831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG426900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3585 bp

ATGGAGTCGCAGGACGACGAGTCCATGGCCGATGGCTCCGACACCGCTCGTGGAGCGTCCAGGGGCCCAAGGCTGTTCATCAGAGAAATGGTCATGAGGAACTTCAAGTCTTACGCCGGCGAGCAACGGGTCGGTCCTTTCCACAAGAGCTTTTCTGCAGTTGTTGGACCAAATGGGAGTGGTAAAAGCAATGTGATAGATGCAATGCTCTTTGTATTTGGAAAACGAGCTAAGCAGATGCGACTGAACAAAGTTTCGGAGCTTATACATAACTCCACGAATCACCAGAATCTGGATAGTGCTGGAGTTTCTGTTCATTTCCAAGAGATCATTGATATGGATGATGGAGAATTTGAAGTTGTTCCAGGAAGTGATTTTGTAATTACGAGAATAGCATATCGGGATAACACCTCCAAGTATTACATCAATGACCGTGCAAGTAATTTCACTGAAGTTACCAAGAAACTGAAAGGGAAAGGAGTTGACCTAGACAACAATCGTTTTTTGATTCTTCAGGGTGAAGTTGAGCAGATTTCACTTATGAAGCCAAAAGCTCAAGGATCCCATGATGAAGGTTTTCTTGAATACCTCGAGGACATTATTGGGACTAACAAATATGTTGAAAAAATTGATGAAGCATATAAAGAGCTAGAATCCCTTAATGAGAAGAGGTCTGGTGTTGTGCAAATGGTTAAACTGGCTGAGAAAGAAAGAGATGCCCTGGAGGATGTGAAAAATGAAGCGGAAGCCTATATGCTGAAAGAGTTGTCACTTCTGAAATGGCAAGAGAAAGCCACAAAATTGGCTCATGAAGATACCACTGCAAAAATGGCTGATCTAAAGGAGAATATAACTAGCTTAGAAGAAAATCTAAAGACCGAAAGGGAGAAGATCCAGGAGAGTAATAATGCACTGAAGGAGCTTGATTCTGTCTACAGTAAACATATGAAACAACAAGAGGAACTTGATAATGCCCTCAGAAGCAGTAATGAAGAATTTAAGGAGTTTGAAAGGGAGGATCTTAAGTATAGGGAAGATCTGAAGCATAAGAAGATGAAGATCAAGAAACTCAAAGATAAACTTCAAAAGGACTCGTTAAAGATTGCTGACACAGAGAAGGAGTGTGAGGACTCGACAAATCTGATCCCAAAACTTGAGGAAAGTATTCCGCAACTGCAAAAACGATTGTTGGATGAAGAAAAAGTCCTAGAGGAAATTCTAGAGAATTCAAAAGTGGAAACTGAAAAATATCGCTCTGAGCTTACAAAAGTTCGTGCTGAATTAGAACCATGGGAAAAGCAACTGATTGAGCACAAGGGGAAACTCGAAGTTAAATGTACTGAACAAAAGCTTTTAAATGAGAAGCATGAAGCTGGTCGTGCAGCTTTTGAAGATGCTCGTAAGCAGGTGGATGATATATTGGGAAGGATAGAAACAAAAACTGCAGGCATTGCAAGGATTCAAAGCGAATTAGAAATGAGCAAGCGCGAAGCAATGGAATTTCGCAATGAGGAACAAGAATACATCAGAGAACAAGAGGCTCTCATTCCTATTGAACAGGCTGCAAGACAGAAGGTTGCAGAACTGAAGTCTGTTCTGGATTCTGAGAAGAGTCAGGGAACAGTTCTAAAAGCAATTCTACATGCTAAGGATTCCAACCGGATACCGGGAATATATGGACGGATGGGCGATTTAGGTGCTATTGATGCAAAATATGATGTTGCCATATCAACAGCTTGTGCCGGACTTGATTATATTGTGGTGGAAACAACTATTGCAGCACAATCATGTGTTGAGCTACTCCGGAGAGAGAACCTTGGAATTGTGACTTGCATGATATTGGAAAAGCAAGCTGATCTCTTACCAAAGTTGAAGGAGAAGATAAGCACTCCAGAAGGAGTTCCTCGCCTTTTTGATTTAGTTAGGGTGCAGGATGAGACAATGAAACTTGCTTTTTATGCAGCATTGCGAAACACTGTTGTAGCTAAAGATCTTGACCAGGCAACACGAATTGCATATGGAGGGAATCACGATTTTCGGCGAGTGGTAACACTTGATGGTGCACTATTTGAAAAATCTGGCACTATGAGTGGCGGGGGAGGTAAGCCACGTGGTGGCAAGATGGGCACTTCTGTTCGTGCCACCAGTGTGTCAGGAGAAGCTGTTGCGATTGCTGAAAAGGAGCTTGAAGCCATGGCTTCTTCATTAAATAATTTGCGCCAGAAAATTGCTGATGCAGCAAGGAGATATCAAGCCTCTGAAAATGCAGTTGCACGCTTGGAGATGGACTTAGCTAAAAGCCAGAAAGAGATTGACAGCCTGAATTCGCAACATGATTATCTTGAGAAGCAAATTGGTTCCCTGGAGGCTGCATCACAGCCGAAGAAGGATGAGCTTGAGAAATTGGATGAACTCAAGAAGCATATTGCTGCAGAAGAAAATGAGATTCAGAAACTTATACAAGGGTCTCAGCAGCTGAAGGAGAAGGCCACGAAACTTCAGAGCAACATAGAAAATGCTGGAGGTGAGAGGTTAAAAGCACAGAAGTCAAAAGTCAAGGATATTCAGTCTGATATTGACAAAAATAACACTGAGGTTAACCGTCGCAAAGTCCAAATTGAGACTGGCCAGAAAACTATAAAGAAGTTAACCAATGTGATTGAAGAATCAAAGAATGAGATAGAACGACTTGGTAAGGAGAAGGAAAATTTGTCTGGCAAGTTCAAAGAAATAGAAAAAAAGGCATTTGAAGTTAAAGAGAAATACGAGCGAACACAGAAGCTGATTGATAATCATAAAGATGTGTTAGATAAAGCGAAATCTGACTATGACAATATGAAAAAGACTTTGTATGAATTGCGGGCATCAGAGGGTAATGCTGTTTTTCAATTACAAGAAAAGAAGAAGGTATACAAGGAGCAGGAATTGAAGGGAAGGCATTACAATAAAAAGCTTGATGACTTGCAAACTGATCTTATGAAGCATATGGAACAAATTCAGAAAGATTTAGTGGACGCGGAAAAGCTTCAAGCAACCCTAGCAGATGAAATTCTTAATAACCCTTGTGACCTTAAAAAGGGCCTTGAAATGGTAGCGCTTCTGGAAGCACAACTGAAAGAGATGAATCCGAATCTTGATTCAGTCGCAGAGTATCGGAGAAAGGTCTCATTATATAATGAACGAGTTGAGGATCTTAATAGGGTCACTCAACAGCGTGATGACATAAAGAGGCAGTATGATGAATGGAGAAAGAAGAGGCATGCCACCTTTTTATTTTTATATGCATTGCCTCTTTTCAAAGCTGTAACTTTAACTGAACTGAAATATTTTGATTTGTGTAGGTTGGATGAGTTCATGGCAGGATTTAATGCTATATCTTTGAAGTTAAAGGAAATGTATCAGGTTTGTCGGCTGTTACCTCTCTGTCTCCAGTATTTTATGGACTCAATGTTTCTACCTTTCATTTTGACACTACAATCTCAAAAAGAATATGTAGTTACAGTTCTATCTCTACTTTGTTTAGTTTTCTCACATCTGTTTCCCAACTTTTGTCATATGCACATAGATGATTACACTGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1194

Amino Acids

136.76

Weight (kDa)

5.99

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	26 - 699	3.6e-29	RecF/RecN/SMC N terminal domain
AAA_15	PF13175	27 - 410	2.5e-06	AAA ATPase domain
AAA_29	PF13555	29 - 86	7.5e-06	P-loop containing region of AAA domain
AAA_23	PF13476	30 - 292	6.2e-10	AAA domain
AAA_21	PF13304	51 - 120	4.6e-06	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	556 - 672	2.5e-20	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1396
AbsI	CCTCGAGG	1 cut(s)	590
Acc36I	ACCTGC	1 cut(s)	1396
AccB7I	CCANNNNNTGG	2 cut(s)	292, 2114
AccBSI	CCGCTC	1 cut(s)	47
AccI	GTMKAC	2 cut(s)	933, 2910
AccII	CGCG	2 cut(s)	1488, 3017
AccIII	TCCGGA	1 cut(s)	1803
AciI	CCGC	6 cut(s)	45, 743, 1169, 2094, 2860, 3017
AclWI	GGATC	6 cut(s)	555, 568, 886, 1026, 1138, 3198
AcoI	YGGCCR	2 cut(s)	27, 2626
AcsI	RAATTY	9 cut(s)	350, 995, 1215, 1225, 1499, 2323, 2707, 2994, 3048
AcuI	CTGAAG	7 cut(s)	471, 497, 935, 1061, 1607, 2483, 2498
AcvI	CACGTG	1 cut(s)	2111
AdeI	CACNNNGTG	1 cut(s)	2114
AfaI	GTAC	1 cut(s)	1339
AfeI	AGCGCT	1 cut(s)	3096
AfiI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2114, 3076, 3088
AflII	CTTAAG	1 cut(s)	1022
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	6 cut(s)	59, 364, 720, 894, 1998, 2361
AleI	CACNNNNGTG	1 cut(s)	2147
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
Alw21I	GWGCWC	2 cut(s)	1314, 2065
Alw26I	GTCTC	5 cut(s)	1931, 2472, 2615, 3169, 3431
Alw44I	GTGCAC	1 cut(s)	2061
AlwI	GGATC	6 cut(s)	555, 568, 886, 1026, 1138, 3198
AlwNI	CAGNNNCTG	3 cut(s)	292, 2476, 2782
Ama87I	CYCGRG	1 cut(s)	590
Aor13HI	TCCGGA	1 cut(s)	1803
Aor51HI	AGCGCT	1 cut(s)	3096
AoxI	GGCC	5 cut(s)	27, 64, 2487, 2626, 3079
ApaI	GGGCCC	1 cut(s)	68
ApaLI	GTGCAC	1 cut(s)	2061
ApeKI	GCWGC	8 cut(s)	1382, 1562, 1778, 1961, 2237, 2369, 2429, 2473
ApoI	RAATTY	9 cut(s)	350, 995, 1215, 1225, 1499, 2323, 2707, 2994, 3048
Asp700I	GAANNNNTTC	6 cut(s)	360, 576, 1164, 1899, 2994, 3024
AspLEI	GCGC	3 cut(s)	1488, 2220, 3097
AspS9I	GGNCC	5 cut(s)	64, 65, 134, 167, 3079
AsuC2I	CCSGG	1 cut(s)	1668
AsuHPI	GGTGA	3 cut(s)	275, 530, 2537
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	134, 167
BaeGI	GKGCMC	3 cut(s)	68, 2065, 2129
BalI	TGGCCA	1 cut(s)	2628
BamHI	GGATCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	2894, 2926
BauI	CACGAG	1 cut(s)	48
BbrPI	CACGTG	1 cut(s)	2111
Bbv12I	GWGCWC	2 cut(s)	1314, 2065
BbvI	GCAGC	8 cut(s)	1394, 1549, 1790, 1973, 2249, 2356, 2416, 2485
BccI	CCATC	6 cut(s)	26, 338, 1678, 2051, 2116, 2278
BcgI	CGANNNNNNTGC	2 cut(s)	1679, 1713
BciT130I	CCWGG	6 cut(s)	61, 366, 722, 896, 2000, 2363
BciVI	GTATCC	1 cut(s)	1656
BcnI	CCSGG	1 cut(s)	1668
BcoDI	GTCTC	5 cut(s)	1931, 2472, 2615, 3169, 3431
BfaI	CTAG	6 cut(s)	488, 650, 855, 1208, 1220, 3038
BfmI	CTRYAG	4 cut(s)	156, 934, 1443, 2430
BfoI	RGCGCY	1 cut(s)	3098
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	1 cut(s)	1396
BfuI	GTATCC	1 cut(s)	1656
BglII	AGATCT	2 cut(s)	1036, 1990
BisI	GCNGC	8 cut(s)	1383, 1563, 1779, 1962, 2238, 2370, 2430, 2474
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	8 cut(s)	1384, 1564, 1780, 1963, 2239, 2371, 2431, 2475
Bme1390I	CCNGG	7 cut(s)	61, 366, 722, 896, 1668, 2000, 2363
Bme18I	GGWCC	2 cut(s)	134, 167
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	5 cut(s)	64, 65, 134, 167, 3079
BmiI	GGNNCC	5 cut(s)	37, 65, 66, 562, 2359
BmrFI	CCNGG	7 cut(s)	61, 366, 722, 896, 1668, 2000, 2363
BmrI	ACTGGG	1 cut(s)	3585
BmsI	GCATC	8 cut(s)	190, 228, 706, 1384, 1696, 2224, 2381, 2873
BmuI	ACTGGG	1 cut(s)	3585
BpmI	CTGGAG	6 cut(s)	324, 743, 1875, 2384, 2541, 3413
Bpu10I	CCTNAGC	1 cut(s)	1647
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	5 cut(s)	540, 1175, 2363, 2399, 2417
BpuMI	CCSGG	1 cut(s)	1668
BsaAI	YACGTR	1 cut(s)	2111
BsaBI	GATNNNNATC	1 cut(s)	1058
BsaI	GGTCTC	2 cut(s)	2472, 3169
BsaJI	CCNNGG	8 cut(s)	24, 60, 68, 720, 1289, 1816, 2193, 2361
BsaWI	WCCGGW	2 cut(s)	1659, 1803
BsaXI	ACNNNNNCTCC	4 cut(s)	297, 327, 2148, 2178
Bsc4I	CCNNNNNNNGG	5 cut(s)	292, 1666, 2114, 3076, 3088
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	5 cut(s)	702, 2145, 2629, 3430, 3580
Bse3DI	GCAATG	7 cut(s)	196, 210, 1449, 1500, 1513, 1964, 3284
Bse8I	GATNNNNATC	1 cut(s)	1058
BseAI	TCCGGA	1 cut(s)	1803
BseBI	CCWGG	6 cut(s)	61, 366, 722, 896, 2000, 2363
BseDI	CCNNGG	8 cut(s)	24, 60, 68, 720, 1289, 1816, 2193, 2361
BseGI	GGATG	9 cut(s)	346, 733, 1198, 1417, 1689, 1939, 2395, 2413, 3352
BseJI	GATNNNNATC	1 cut(s)	1058
BseLI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2114, 3076, 3088
BseMI	GCAATG	7 cut(s)	196, 210, 1449, 1500, 1513, 1964, 3284
BseMII	CTCAG	6 cut(s)	693, 991, 1248, 1596, 2483, 2583
BseNI	ACTGG	5 cut(s)	702, 2145, 2629, 3430, 3580
BseSI	GKGCMC	3 cut(s)	68, 2065, 2129
BseXI	GCAGC	8 cut(s)	1394, 1549, 1790, 1973, 2249, 2356, 2416, 2485
BsgI	GTGCAG	2 cut(s)	1401, 1949
Bsh1236I	CGCG	2 cut(s)	1488, 3017
BshFI	GGCC	5 cut(s)	29, 66, 2489, 2628, 3081
BsiHKAI	GWGCWC	2 cut(s)	1314, 2065
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	5 cut(s)	117, 1660, 1667, 1743, 1804
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2114, 3076, 3088
BsmAI	GTCTC	5 cut(s)	1931, 2472, 2615, 3169, 3431
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	5 cut(s)	29, 66, 2489, 2628, 3081
Bso31I	GGTCTC	2 cut(s)	2472, 3169
BsoBI	CYCGRG	1 cut(s)	590
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	4 cut(s)	68, 1314, 2065, 2129
Bsp13I	TCCGGA	1 cut(s)	1803
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp19I	CCATGG	3 cut(s)	24, 1289, 2193
BspACI	CCGC	6 cut(s)	45, 743, 1169, 2094, 2860, 3017
BspANI	GGCC	5 cut(s)	29, 66, 2489, 2628, 3081
BspCNI	CTCAG	6 cut(s)	694, 990, 1249, 1597, 2482, 2584
BspEI	TCCGGA	1 cut(s)	1803
BspFNI	CGCG	2 cut(s)	1488, 3017
BspHI	TCATGA	2 cut(s)	93, 808
BspLI	GGNNCC	5 cut(s)	37, 65, 66, 562, 2359
BspMAI	CTGCAG	3 cut(s)	160, 1447, 2434
BspMI	ACCTGC	1 cut(s)	1396
BspPI	GGATC	6 cut(s)	555, 568, 886, 1026, 1138, 3198
BspTI	CTTAAG	1 cut(s)	1022
BspTNI	GGTCTC	2 cut(s)	2472, 3169
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	7 cut(s)	196, 210, 1449, 1500, 1513, 1964, 3284
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	5 cut(s)	702, 2145, 2629, 3430, 3580
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	8 cut(s)	24, 60, 68, 720, 1289, 1816, 2193, 2361
BssNAI	GTATAC	1 cut(s)	2911
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	5 cut(s)	24, 68, 1289, 1816, 2193
Bst1107I	GTATAC	1 cut(s)	2911
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	6 cut(s)	61, 366, 722, 896, 2000, 2363
Bst4CI	ACNGT	6 cut(s)	434, 938, 1624, 1978, 2603, 3502
Bst6I	CTCTTC	3 cut(s)	662, 1604, 3248
BstAFI	CTTAAG	1 cut(s)	1022
BstAPI	GCANNNNNTGC	1 cut(s)	1451
BstBAI	YACGTR	1 cut(s)	2111
BstC8I	GCNNGC	8 cut(s)	118, 122, 1447, 1484, 1851, 2275, 2862, 3261
BstDSI	CCRYGG	3 cut(s)	24, 1289, 2193
BstENI	CCTNNNNNAGG	1 cut(s)	3074
BstF5I	GGATG	9 cut(s)	346, 733, 1198, 1417, 1689, 1939, 2395, 2413, 3352
BstFNI	CGCG	2 cut(s)	1488, 3017
BstH2I	RGCGCY	1 cut(s)	3098
BstHHI	GCGC	3 cut(s)	1488, 2220, 3097
BstMAI	GTCTC	5 cut(s)	1931, 2472, 2615, 3169, 3431
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 830, 1379, 1451, 1706, 1958, 2124, 2237, 3038
BstNI	CCWGG	6 cut(s)	61, 366, 722, 896, 2000, 2363
BstNSI	RCATGY	2 cut(s)	1646, 3263
BstSCI	CCNGG	7 cut(s)	59, 364, 720, 894, 1666, 1998, 2361
BstSFI	CTRYAG	4 cut(s)	156, 934, 1443, 2430
BstSLI	GKGCMC	3 cut(s)	68, 2065, 2129
BstUI	CGCG	2 cut(s)	1488, 3017
BstV1I	GCAGC	8 cut(s)	1394, 1549, 1790, 1973, 2249, 2356, 2416, 2485
BstX2I	RGATCY	6 cut(s)	560, 891, 1018, 1036, 1990, 3190
BstXI	CCANNNNNNTGG	1 cut(s)	802
BstYI	RGATCY	6 cut(s)	560, 891, 1018, 1036, 1990, 3190
BstZ17I	GTATAC	1 cut(s)	2911
BsuI	GTATCC	1 cut(s)	1656
BsuRI	GGCC	5 cut(s)	29, 66, 2489, 2628, 3081
BtgI	CCRYGG	3 cut(s)	24, 1289, 2193
BtsCI	GGATG	9 cut(s)	346, 733, 1198, 1417, 1689, 1939, 2395, 2413, 3352
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	7 cut(s)	447, 819, 911, 1974, 2152, 2589, 3573
BveI	ACCTGC	1 cut(s)	1396
Cac8I	GCNNGC	8 cut(s)	118, 122, 1447, 1484, 1851, 2275, 2862, 3261
CaiI	CAGNNNCTG	3 cut(s)	292, 2476, 2782
CciI	TCATGA	2 cut(s)	93, 808
CfoI	GCGC	3 cut(s)	1488, 2220, 3097
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	5 cut(s)	64, 65, 134, 167, 3079
CseI	GACGC	2 cut(s)	45, 3023
Csp6I	GTAC	1 cut(s)	1338
CviQI	GTAC	1 cut(s)	1338
DraI	TTTAAA	1 cut(s)	1356
DraIII	CACNNNGTG	1 cut(s)	2114
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	2 cut(s)	27, 2626
Eam1104I	CTCTTC	3 cut(s)	662, 1604, 3248
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	3 cut(s)	662, 1604, 3248
Eco130I	CCWWGG	5 cut(s)	24, 68, 1289, 1816, 2193
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	2 cut(s)	2472, 3169
Eco32I	GATATC	1 cut(s)	2249
Eco47I	GGWCC	2 cut(s)	134, 167
Eco47III	AGCGCT	1 cut(s)	3096
Eco57I	CTGAAG	7 cut(s)	471, 497, 935, 1061, 1607, 2483, 2498
Eco72I	CACGTG	1 cut(s)	2111
Eco88I	CYCGRG	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	3074
EcoO109I	RGGNCCY	2 cut(s)	64, 3079
EcoRI	GAATTC	2 cut(s)	1225, 2323
EcoRII	CCWGG	6 cut(s)	59, 364, 720, 894, 1998, 2361
EcoRV	GATATC	1 cut(s)	2249
EcoT14I	CCWWGG	5 cut(s)	24, 68, 1289, 1816, 2193
EcoT22I	ATGCAT	1 cut(s)	3286
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	5 cut(s)	24, 68, 1289, 1816, 2193
FalI	AAGNNNNNCTT	6 cut(s)	564, 596, 948, 980, 1065, 1097
FaqI	GGGAC	1 cut(s)	619
FauI	CCCGC	2 cut(s)	2087, 2853
FauNDI	CATATG	4 cut(s)	945, 2017, 2985, 3555
FblI	GTMKAC	2 cut(s)	933, 2910
Fnu4HI	GCNGC	8 cut(s)	1383, 1563, 1779, 1962, 2238, 2370, 2430, 2474
FokI	GGATG	9 cut(s)	353, 740, 1205, 1424, 1696, 1946, 2402, 2420, 3359
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	8 cut(s)	1383, 1563, 1779, 1962, 2238, 2370, 2430, 2474
FspBI	CTAG	6 cut(s)	488, 650, 855, 1208, 1220, 3038
GlaI	GCGC	3 cut(s)	1487, 2219, 3096
GluI	GCNGC	8 cut(s)	1383, 1563, 1779, 1962, 2238, 2370, 2430, 2474
GsuI	CTGGAG	6 cut(s)	324, 743, 1875, 2384, 2541, 3413
HaeII	RGCGCY	1 cut(s)	3098
HaeIII	GGCC	5 cut(s)	29, 66, 2489, 2628, 3081
HapII	CCGG	5 cut(s)	117, 1660, 1667, 1743, 1804
HgaI	GACGC	2 cut(s)	45, 3023
HhaI	GCGC	3 cut(s)	1488, 2220, 3097
Hin6I	GCGC	3 cut(s)	1486, 2218, 3095
HinP1I	GCGC	3 cut(s)	1486, 2218, 3095
HincII	GTYRAC	3 cut(s)	484, 2599, 2649
HindII	GTYRAC	3 cut(s)	484, 2599, 2649
HindIII	AAGCTT	3 cut(s)	1349, 2951, 3023
HpaI	GTTAAC	2 cut(s)	2599, 2649
HpaII	CCGG	5 cut(s)	117, 1660, 1667, 1743, 1804
HphI	GGTGA	3 cut(s)	275, 530, 2537
Hpy166II	GTNNAC	8 cut(s)	484, 934, 941, 2063, 2599, 2649, 2911, 3013
Hpy8I	GTNNAC	8 cut(s)	484, 934, 941, 2063, 2599, 2649, 2911, 3013
Hpy99I	CGWCG	2 cut(s)	20, 2607
HpyCH4III	ACNGT	6 cut(s)	434, 938, 1624, 1978, 2603, 3502
HpyCH4IV	ACGT	1 cut(s)	2110
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 830, 1379, 1451, 1706, 1958, 2124, 2237, 3038
HpySE526I	ACGT	1 cut(s)	2110
HspAI	GCGC	3 cut(s)	1486, 2218, 3095
Kpn2I	TCCGGA	1 cut(s)	1803
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
KspAI	GTTAAC	2 cut(s)	2599, 2649
LmnI	GCTCC	6 cut(s)	41, 53, 259, 919, 2182, 2917
Lsp1109I	GCAGC	8 cut(s)	1394, 1549, 1790, 1973, 2249, 2356, 2416, 2485
LweI	GCATC	8 cut(s)	190, 228, 706, 1384, 1696, 2224, 2381, 2873
MaeI	CTAG	6 cut(s)	488, 650, 855, 1208, 1220, 3038
MaeII	ACGT	1 cut(s)	2110
MaeIII	GTNAC	9 cut(s)	454, 768, 1825, 2047, 3065, 3202, 3304, 3414, 3496
MbiI	CCGCTC	1 cut(s)	47
MflI	RGATCY	6 cut(s)	560, 891, 1018, 1036, 1990, 3190
MhlI	GDGCHC	4 cut(s)	68, 1314, 2065, 2129
MlsI	TGGCCA	1 cut(s)	2628
MluNI	TGGCCA	1 cut(s)	2628
MlyI	GAGTC	6 cut(s)	14, 29, 1085, 1124, 1621, 3437
MmeI	TCCRAC	5 cut(s)	63, 145, 1170, 1680, 3324
Mox20I	TGGCCA	1 cut(s)	2628
Mph1103I	ATGCAT	1 cut(s)	3286
MreI	CGCCGGCG	1 cut(s)	116
MroI	TCCGGA	1 cut(s)	1803
MroNI	GCCGGC	1 cut(s)	116
MroXI	GAANNNNTTC	6 cut(s)	360, 576, 1164, 1899, 2994, 3024
MscI	TGGCCA	1 cut(s)	2628
MslI	CAYNNNNRTG	5 cut(s)	335, 1786, 2147, 2799, 3564
Msp20I	TGGCCA	1 cut(s)	2628
MspA1I	CMGCKG	1 cut(s)	2476
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	5 cut(s)	117, 1660, 1667, 1743, 1804
MspR9I	CCNGG	7 cut(s)	61, 366, 722, 896, 1668, 2000, 2363
MvaI	CCWGG	6 cut(s)	61, 366, 722, 896, 2000, 2363
MvnI	CGCG	2 cut(s)	1488, 3017
MwoI	GCNNNNNNNGC	9 cut(s)	53, 830, 1379, 1451, 1706, 1958, 2124, 2237, 3038
NaeI	GCCGGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	1668
NcoI	CCATGG	3 cut(s)	24, 1289, 2193
NdeI	CATATG	4 cut(s)	945, 2017, 2985, 3555
NgoMIV	GCCGGC	1 cut(s)	116
NlaIV	GGNNCC	5 cut(s)	37, 65, 66, 562, 2359
NmuCI	GTSAC	4 cut(s)	768, 1825, 3065, 3202
NsiI	ATGCAT	1 cut(s)	3286
NspI	RCATGY	2 cut(s)	1646, 3263
OliI	CACNNNNGTG	1 cut(s)	2147
PaeI	GCATGC	1 cut(s)	3263
PaeR7I	CTCGAG	1 cut(s)	590
PagI	TCATGA	2 cut(s)	93, 808
PaqCI	CACCTGC	1 cut(s)	1396
PdiI	GCCGGC	1 cut(s)	118
PdmI	GAANNNNTTC	6 cut(s)	360, 576, 1164, 1899, 2994, 3024
PflMI	CCANNNNNTGG	2 cut(s)	292, 2114
PfoI	TCCNGGA	2 cut(s)	364, 894
PkrI	GCNGC	8 cut(s)	1384, 1564, 1780, 1963, 2239, 2371, 2431, 2475
PleI	GAGTC	6 cut(s)	13, 28, 1085, 1124, 1620, 3437
PmaCI	CACGTG	1 cut(s)	2111
PmlI	CACGTG	1 cut(s)	2111
PpsI	GAGTC	6 cut(s)	13, 28, 1085, 1124, 1620, 3437
Ppu21I	YACGTR	1 cut(s)	2111
Psp6I	CCWGG	6 cut(s)	59, 364, 720, 894, 1998, 2361
PspCI	CACGTG	1 cut(s)	2111
PspGI	CCWGG	6 cut(s)	59, 364, 720, 894, 1998, 2361
PspN4I	GGNNCC	5 cut(s)	37, 65, 66, 562, 2359
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	5 cut(s)	64, 65, 134, 167, 3079
PspXI	VCTCGAGB	1 cut(s)	590
PsrI	GAACNNNNNNTAC	2 cut(s)	3486, 3518
PstI	CTGCAG	3 cut(s)	160, 1447, 2434
PstNI	CAGNNNCTG	3 cut(s)	292, 2476, 2782
PsuI	RGATCY	6 cut(s)	560, 891, 1018, 1036, 1990, 3190
PvuII	CAGCTG	1 cut(s)	2476
RsaI	GTAC	1 cut(s)	1339
RsaNI	GTAC	1 cut(s)	1338
RseI	CAYNNNNRTG	5 cut(s)	335, 1786, 2147, 2799, 3564
SatI	GCNGC	8 cut(s)	1383, 1563, 1779, 1962, 2238, 2370, 2430, 2474
Sau96I	GGNCC	5 cut(s)	64, 65, 134, 167, 3079
SchI	GAGTC	6 cut(s)	14, 29, 1085, 1124, 1621, 3437
ScrFI	CCNGG	7 cut(s)	61, 366, 722, 896, 1668, 2000, 2363
SduI	GDGCHC	4 cut(s)	68, 1314, 2065, 2129
SfaNI	GCATC	8 cut(s)	190, 228, 706, 1384, 1696, 2224, 2381, 2873
SfcI	CTRYAG	4 cut(s)	156, 934, 1443, 2430
Sfr274I	CTCGAG	1 cut(s)	590
SgrAI	CRCCGGYG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	134, 167
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	5 cut(s)	335, 1786, 2147, 2799, 3564
SmlI	CTYRAG	7 cut(s)	555, 590, 1022, 1154, 2342, 2396, 2414
SmoI	CTYRAG	7 cut(s)	555, 590, 1022, 1154, 2342, 2396, 2414
SphI	GCATGC	1 cut(s)	3263
SsiI	CCGC	6 cut(s)	45, 743, 1169, 2094, 2860, 3017
SspI	AATATT	1 cut(s)	3326
SspMI	CTAG	6 cut(s)	488, 650, 855, 1208, 1220, 3038
StyD4I	CCNGG	7 cut(s)	59, 364, 720, 894, 1666, 1998, 2361
StyI	CCWWGG	5 cut(s)	24, 68, 1289, 1816, 2193
TaaI	ACNGT	6 cut(s)	434, 938, 1624, 1978, 2603, 3502
TaiI	ACGT	1 cut(s)	2113
TaqI	TCGA	3 cut(s)	591, 1133, 1326
TaqII	GACCGA	2 cut(s)	122, 893
TatI	WGTACW	1 cut(s)	1337
TscAI	CASTG	7 cut(s)	454, 826, 918, 1981, 2152, 2596, 3580
TseFI	GTSAC	4 cut(s)	768, 1825, 3065, 3202
TseI	GCWGC	8 cut(s)	1382, 1562, 1778, 1961, 2237, 2369, 2429, 2473
Tsp45I	GTSAC	4 cut(s)	768, 1825, 3065, 3202
TspGWI	ACGGA	1 cut(s)	1696
TspRI	CASTG	7 cut(s)	454, 826, 918, 1981, 2152, 2596, 3580
Van91I	CCANNNNNTGG	2 cut(s)	292, 2114
Vha464I	CTTAAG	1 cut(s)	1022
VneI	GTGCAC	1 cut(s)	2061
VpaK11BI	GGWCC	2 cut(s)	134, 167
XagI	CCTNNNNNAGG	1 cut(s)	3074
XapI	RAATTY	9 cut(s)	350, 995, 1215, 1225, 1499, 2323, 2707, 2994, 3048
XbaI	TCTAGA	1 cut(s)	1219
XceI	RCATGY	2 cut(s)	1646, 3263
XcmI	CCANNNNNNNNNTGG	2 cut(s)	826, 2621
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	2 cut(s)	933, 2910
XmnI	GAANNNNTTC	6 cut(s)	360, 576, 1164, 1899, 2994, 3024
XspI	CTAG	6 cut(s)	488, 650, 855, 1208, 1220, 3038
Zsp2I	ATGCAT	1 cut(s)	3286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.