Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

22025787 .. 22029311

Gene Structure 3525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTGAGATCTTCCCAGTTAATTTTAACCCCTATTACTCACTTACTTTCTCTCTTCTCCTCAAAATCGGGCTGCTCTCTCTCTCTGCTCTCGTCGCTCGGGCTGCTCTCTCTCTCTGCTCTCGTCGCCCCGCACAACCCGCCCTCTCTCTCGAATCTGCCGTCGCGAGCTCTGCCTCCCGCCGCCGTCGCGAGCTCTTCCCCCCTCCGCTGTTGTCGCTTCGCGATCTCTCTCTCTCTTCCGTCGTCGCTCGCGAGCCTCCCTCCGCCGGCGACGACTCTGCCTCTCGCCGCCGTCGCGAGCTCGGCCTCCCTCCACCGTCGCGAGCTCTTCCTCCCTCCGCTGTTTCATCTTTCAGGTTTGATTTGGTTGATTTCTATGTTGAATCAATCAATCAAAGCTGTAATCAACAAAGTCATCTCTTCCAAGTCGAGTACGCCCTCGAAGCCGTCCGCAAGGGTAACGCCACCATCGGCGTCCGTGGCATGGAATCGGCGCCGGACGAGTTCATCGGCGACGGCTTGGGCTCGAGGAAGCCTCGGCTTTTCATCAGGGAAATGGTCATGAGGAACTTCAAGTCTTACGCCAGTGAACAACGCGTTCGTCGTTTCCATAAGAGCTTTTCGGCAGTTGTTGGACCTAATGGGAGTGGGAAAAGCAATGTCATTGATGCAATGCTATTTGTATTCAAAAAGCGAGCTAAGCAGATGCGACTTAACAGAGTTTCGGAGCTCATTCATAACTCCACCGATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

253

Amino Acids

27.96

Weight (kDa)

10.33

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	183 - 249	3e-21	RecF/RecN/SMC N terminal domain
AAA_15	PF13175	184 - 233	3.2e-06	AAA ATPase domain
AAA_23	PF13476	187 - 237	2e-07	AAA domain
AAA_29	PF13555	187 - 243	1.9e-06	P-loop containing region of AAA domain
AAA_21	PF13304	208 - 230	4e-06	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	496
AccII	CGCG	7 cut(s)	167, 192, 225, 255, 300, 325, 600
AciI	CCGC	9 cut(s)	132, 141, 181, 184, 209, 267, 292, 342, 454
AcyI	GRCGYC	2 cut(s)	477, 497
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	269, 487
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	386, 577, 691
AluBI	AGCT	8 cut(s)	171, 196, 304, 329, 402, 621, 701, 733
AluI	AGCT	8 cut(s)	171, 196, 304, 329, 402, 621, 701, 733
Alw21I	GWGCWC	5 cut(s)	173, 198, 306, 331, 735
Ama87I	CYCGRG	2 cut(s)	99, 529
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	73, 104
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	638
AvaI	CYCGRG	2 cut(s)	99, 529
AvaII	GGWCC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	6 cut(s)	173, 198, 306, 331, 530, 735
Bbv12I	GWGCWC	5 cut(s)	173, 198, 306, 331, 735
BbvI	GCAGC	2 cut(s)	60, 91
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	5 cut(s)	146, 171, 279, 434, 535
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BfaI	CTAG	1 cut(s)	757
BfoI	RGCGCY	1 cut(s)	500
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	4 cut(s)	74, 105, 184, 292
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	4 cut(s)	75, 106, 185, 293
Bme18I	GGWCC	1 cut(s)	638
BmeT110I	CYCGRG	2 cut(s)	99, 529
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	661, 699
BmuI	ACTGGG	1 cut(s)	11
BplI	GAGNNNNNCTC	4 cut(s)	248, 280, 523, 555
Bpu1102I	GCTNAGC	1 cut(s)	702
BsaHI	GRCGYC	2 cut(s)	477, 497
BsaJI	CCNNGG	2 cut(s)	481, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 487
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	17, 588
Bse3DI	GCAATG	2 cut(s)	667, 681
BseDI	CCNNGG	2 cut(s)	481, 539
BseLI	CCNNNNNNNGG	2 cut(s)	269, 487
BseMI	GCAATG	2 cut(s)	667, 681
BseNI	ACTGG	2 cut(s)	17, 588
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	60, 91
Bsh1236I	CGCG	7 cut(s)	167, 192, 225, 255, 300, 325, 600
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	496
BsiHKAI	GWGCWC	5 cut(s)	173, 198, 306, 331, 735
BsiHKCI	CYCGRG	2 cut(s)	99, 529
BsiSI	CCGG	2 cut(s)	270, 500
BslI	CCNNNNNNNGG	2 cut(s)	269, 487
BsnI	GGCC	1 cut(s)	309
BsoBI	CYCGRG	2 cut(s)	99, 529
Bsp1286I	GDGCHC	6 cut(s)	173, 198, 306, 331, 530, 735
Bsp143I	GATC	2 cut(s)	9, 226
Bsp1720I	GCTNAGC	1 cut(s)	702
Bsp68I	TCGCGA	6 cut(s)	167, 192, 225, 255, 300, 325
BspACI	CCGC	9 cut(s)	132, 141, 181, 184, 209, 267, 292, 342, 454
BspANI	GGCC	1 cut(s)	309
BspFNI	CGCG	7 cut(s)	167, 192, 225, 255, 300, 325, 600
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	498
BspQI	GCTCTTC	2 cut(s)	203, 336
BspT107I	GGYRCC	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	667, 681
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	17, 588
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	481, 539
BssMI	GATC	2 cut(s)	9, 226
BssNI	GRCGYC	2 cut(s)	477, 497
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	5 cut(s)	60, 203, 244, 336, 428
BstACI	GRCGYC	2 cut(s)	477, 497
BstC8I	GCNNGC	8 cut(s)	169, 194, 253, 257, 271, 302, 327, 699
BstDEI	CTNAG	2 cut(s)	6, 702
BstDSI	CCRYGG	1 cut(s)	481
BstFNI	CGCG	7 cut(s)	167, 192, 225, 255, 300, 325, 600
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	2 cut(s)	12, 229
BstMBI	GATC	2 cut(s)	9, 226
BstUI	CGCG	7 cut(s)	167, 192, 225, 255, 300, 325, 600
BstV1I	GCAGC	2 cut(s)	60, 91
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	595
BtuMI	TCGCGA	6 cut(s)	167, 192, 225, 255, 300, 325
Cac8I	GCNNGC	8 cut(s)	169, 194, 253, 257, 271, 302, 327, 699
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	638
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	2 cut(s)	487, 565
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	2 cut(s)	6, 702
DinI	GGCGCC	1 cut(s)	498
DpnI	GATC	2 cut(s)	11, 228
DpnII	GATC	2 cut(s)	9, 226
Eam1104I	CTCTTC	5 cut(s)	60, 203, 244, 336, 428
EarI	CTCTTC	5 cut(s)	60, 203, 244, 336, 428
EciI	GGCGGA	1 cut(s)	256
Ecl136II	GAGCTC	5 cut(s)	171, 196, 304, 329, 733
Eco24I	GRGCYC	6 cut(s)	173, 198, 306, 331, 530, 735
Eco47I	GGWCC	1 cut(s)	638
Eco53kI	GAGCTC	5 cut(s)	171, 196, 304, 329, 733
Eco88I	CYCGRG	2 cut(s)	99, 529
EcoICRI	GAGCTC	5 cut(s)	171, 196, 304, 329, 733
EcoT38I	GRGCYC	6 cut(s)	173, 198, 306, 331, 530, 735
EgeI	GGCGCC	1 cut(s)	498
EheI	GGCGCC	1 cut(s)	498
FaeI	CATG	2 cut(s)	490, 568
FaiI	YATR	5 cut(s)	381, 488, 566, 615, 741
FatI	CATG	2 cut(s)	486, 564
FauI	CCCGC	3 cut(s)	139, 148, 188
Fnu4HI	GCNGC	4 cut(s)	74, 105, 184, 292
FriOI	GRGCYC	6 cut(s)	173, 198, 306, 331, 530, 735
Fsp4HI	GCNGC	4 cut(s)	74, 105, 184, 292
FspBI	CTAG	1 cut(s)	757
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	4 cut(s)	74, 105, 184, 292
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	2 cut(s)	270, 500
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	2 cut(s)	477, 497
Hin1II	CATG	2 cut(s)	490, 568
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	4 cut(s)	155, 278, 386, 491
HpaII	CCGG	2 cut(s)	270, 500
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	1 cut(s)	730
Hpy188III	TCNNGA	8 cut(s)	152, 166, 191, 224, 254, 299, 324, 565
Hpy8I	GTNNAC	1 cut(s)	593
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	674
HpyF3I	CTNAG	2 cut(s)	6, 702
Hsp92I	GRCGYC	2 cut(s)	477, 497
Hsp92II	CATG	2 cut(s)	490, 568
HspAI	GCGC	1 cut(s)	497
KasI	GGCGCC	1 cut(s)	496
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	9, 226
LguI	GCTCTTC	2 cut(s)	203, 336
LmnI	GCTCC	1 cut(s)	730
LpnPI	CCDG	6 cut(s)	30, 283, 343, 513, 538, 601
Lsp1109I	GCAGC	2 cut(s)	60, 91
LweI	GCATC	2 cut(s)	661, 699
MaeI	CTAG	1 cut(s)	757
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	2 cut(s)	11, 228
MboI	GATC	2 cut(s)	9, 226
MboII	GAAGA	6 cut(s)	4, 47, 190, 231, 323, 415
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	6 cut(s)	173, 198, 306, 331, 530, 735
MluCI	AATT	1 cut(s)	22
MluI	ACGCGT	1 cut(s)	598
Mly113I	GGCGCC	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	616
MreI	CGCCGGCG	1 cut(s)	269
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	3 cut(s)	21, 27, 717
MspA1I	CMGCKG	2 cut(s)	211, 344
MspI	CCGG	2 cut(s)	270, 500
MvnI	CGCG	7 cut(s)	167, 192, 225, 255, 300, 325, 600
NaeI	GCCGGC	1 cut(s)	271
NarI	GGCGCC	1 cut(s)	497
NdeII	GATC	2 cut(s)	9, 226
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	490, 568
NlaIV	GGNNCC	1 cut(s)	498
NmeAIII	GCCGAG	2 cut(s)	285, 520
NruI	TCGCGA	6 cut(s)	167, 192, 225, 255, 300, 325
PaeR7I	CTCGAG	1 cut(s)	529
PagI	TCATGA	1 cut(s)	564
PciSI	GCTCTTC	2 cut(s)	203, 336
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 252, 604
PdiI	GCCGGC	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	155, 386, 491
PkrI	GCNGC	4 cut(s)	75, 106, 185, 293
PleI	GAGTC	1 cut(s)	272
PluTI	GGCGCC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	272
Psp124BI	GAGCTC	5 cut(s)	173, 198, 306, 331, 735
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	638
PspXI	VCTCGAGB	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	9
RruI	TCGCGA	6 cut(s)	167, 192, 225, 255, 300, 325
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SacI	GAGCTC	5 cut(s)	173, 198, 306, 331, 735
SapI	GCTCTTC	2 cut(s)	203, 336
SaqAI	TTAA	3 cut(s)	21, 27, 717
SatI	GCNGC	4 cut(s)	74, 105, 184, 292
Sau3AI	GATC	2 cut(s)	9, 226
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	1 cut(s)	272
SduI	GDGCHC	6 cut(s)	173, 198, 306, 331, 530, 735
SfaNI	GCATC	2 cut(s)	661, 699
SfoI	GGCGCC	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	529
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	638
SlaI	CTCGAG	1 cut(s)	529
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	9 cut(s)	132, 141, 181, 184, 209, 267, 292, 342, 454
SspDI	GGCGCC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	757
SstI	GAGCTC	5 cut(s)	173, 198, 306, 331, 735
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	4 cut(s)	153, 432, 444, 530
TasI	AATT	1 cut(s)	22
TauI	GCSGC	2 cut(s)	186, 294
TfiI	GAWTC	3 cut(s)	155, 386, 491
Tru1I	TTAA	3 cut(s)	21, 27, 717
Tru9I	TTAA	3 cut(s)	21, 27, 717
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	2 cut(s)	73, 104
TspDTI	ATGAA	4 cut(s)	339, 499, 538, 728
TspGWI	ACGGA	2 cut(s)	232, 470
TspRI	CASTG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	638
XhoI	CTCGAG	1 cut(s)	529
XspI	CTAG	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.