Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001236

Physical Location & Seq

Genomic Coordinates Reverse (-)

8528563 .. 8536778

Gene Structure 8216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3624 bp

ATGGAGCCGCAGGACGACGAGTCCATGGCCGATGGCTCCGACACCGCTCGTGGAGCGTCCAGGGGCCCAAGGCTGTTCATCAGAGAAATGGTCATGAGGAACTTCAAGTCTTACGCCGGCGAGCAACGCGTCGGTCCTTTCCACAAGAGCTTTTCTGCAGTTGTTGGACCAAATGGGAGTGGTAAAAGCAATGTGATAGATGCAATGCTCTTTGTATTTGGAAAACGAGCTAAGCAGATGCGACTGAACAAAGTTTCAGAGCTTATACATAACTCCACGAATCACCAGAATCTGGATAGTGCTGGAGTTTCTGTTCATTTCCAAGAGATCATTGATATGGATGATGGAGAATTTGAAGTTGTTCCAGGAAGTGATTTTGTAATTACGAGAATAGCATATAGGGATAACACCTCCAAGTATTACATCAATGACCGTGCAAGTAATTTCACTGAAGTTACCAAGAAACTGAAAGGGAAAGGAGTCGACCTAGACAACAATCGTTTTTTGATTCTTCAGGGTGAAGTTGAGCAGATTTCACTTATGAAGCCAAAAGCTCAAGGATCCCATGATGAAGGTTTTCTTGAATACCTCGAGGACATTATTGGGACTAACAAATATGTTGAAAAAATTGATGAAGCATATAAAGAGCTAGAATCCCTTAATGAGAAGAGGTCTGGTGTTGTGCAAATGGTTAAACTGGCTGAGAAAGAAAGAGATGCCTTGGAGGATGTGAAAAATGAAGCGGAAGCCTATATGCTGAAAGAGTTGTCACTTCTGAAATGGCAAGAGAAAGCCACAAAATTGGCTCATGAAGATACCACTGCAAAAATGGCTGATCTAAAGGAGAATATAACTAGCTTAGAAGAAAATCTAAAGACTGAAAGAGAGAAGATCCAGGAGAGTAATAATGCACTGAAGGAGCTTGATTCTGTCTACAGTAAACATATGAAACAACAAGAGGAACTTGATAATGCCCTCAGAAGCAGTAATGAAGAATTTAAGGAGTTTGAAAGGGAGGATCTTAAGTATAGGGAAGATCTGAAGCATAAGAAGATGAAGATCAAGAAACTCAAAGATAAACTTCAAAAGGACTCGTTAAAGATTGCTGACACAGAGAAGGAGTGTGAGGACTCGACAAATCTGATCCCAAAACTTGAGGAAAGTATTCCGCAACTGCAAAAACGATTGTTGGATGAAGAAAAAGTCCTAGAGGAAATTCTAGAGAATTCAAAAGTGGAAACTGAAAAATATCGCTCTGAGCTTACAAAAGTTCGTGCTGAATTAGAACCATGGGAAAAGCAACTGATTGAGCACAAGGGGAAACTCGAAGTTAAATGTACTGAACAAAAGCTTTTAAATGAGAAGCATGAAGCTGGTCGTGCAGCTTTTGAAGATGCTCGTAAGCAGATGGATGATATATTGGGAAGGATAGAAACAAAAACTGCGGGCATTGCAAGGATTCAAAGTGAATTAGAAATGAGCAAGCGCGAAGCAATGGAATTTCGCAAAGAGGAACAAGAATACATCAGAGAACAAGAGGCTCTCATTCCTAGTGAACAGGCTGCAAGACAGAAGGTTGCAGAACTGAAGTCTGTTCTGGATTCTGAGAAGAGTCAGGGAACAGTTCTAAAAGCAATTCTACATGCTAAGGATTCCAACCGGATACCGGGAATATATGGACGGATGGGCGATTTAGGTGCTATTGATGCAAAATATGATGTTGCCATATCAACAGCTTGTGCCGGACTTGATTATATTGTGGTGGAAACAACTATTGCAGCGCAATCATGTGTTGAGCTACTCCGGAGAGAGAACCTTGGAATTGTGACTTGCATGATATTGGAGGAGAGAATGAAGCTTGCTTTTTATGCAGCATTGCGAAACACTGTCGTAGCTAAAGATCTTGACCAGGCAGCACGAATTGCATATGGAGGGAATCATGATTTTCGGCGAGTGGTAACACTTGATGGTGCACTATTTGAAAAATCTGGCACTATGAGTGGTGGGGGAGGTAAGCCACGCGGTGGCAAGATGGGCACTTCTGTTCGTGCCACCAGTGTGTCAGGAGAAGCTGTTGCGATTGCTGAAAAGGAGCTTGAAGCCATGGCTTCTTCATTAAATAATTTGCGCCAGAAAATTGCTGATGCAGCAAGGAGATATCAAGCCTCTGAAAATGCAGTTGCACGCTTGGAGATGGACTTAGCTAAAAGCCAGAAAGAGATTGACAGCCTGAATTCGCAACATGATTATCTTGAGAAGCAAATTGGTTCCCTGGAGGCTGCATCACAGCCAAAGAAGGATGAGATTGAGAAATTGGATGAACTCAAGAAGCATATTGCTGCAGAAGAAAAAGAGATTCAGAAACTTATACAAGGGTCTCAGCAGCTGAAGGAGAAGGCCACGAAACTTCAGAGCAACATAGAAAATGCTGGAGGTGAGAGGTTAAAAGCACAGAAGTCAAAAGTCAAGGACATTCAGTCTGATATTGACAAAAATAACACTGAGGTTAACCGTCGCAAAGTCCAAATTGAGACTGGCCAGAAAACTATAAAGAAGTTAACCAATGTGATTGAAGAATCAAAGAATGAGATAGAACGACTTGGTAAGGAGAAGGAAAATTTGTCTGGCAAGTTCAAAGAAATAGAAAAGAAGGCATTTGAAGTTAAAGAGAAATACGAGCGAACACAGAAGCTGATTGATAATCATAAAGATGTGTTAGATAAAGCGAAATCTGACTATGACAATATGAAAAAGACTTTGTATGAATTGCGGGCATCAGAGGGTAATGCTGTTTTTCAATTACAAGAAAAGAAGAAGGTATACAAGGAGCAGGAATTGAAGGGAAGGCATTACAATAAAAAGCTTGATGACTTGCAAACTGATCTTATGAAGCATATGGAACAAATTCAGAAAGATTTAGTGGACGCAGAAAAGCTTCAAGCAACCCTAGCAGATGAAATTCTTAATAACCCTTGTGACCTTAAAAAGGGCCTTGAAATGGTAGCGCTTCTGGAAGCACAACTGAAAGAGATGAATCCGAATCTTGATTCAGTCGCAGAGTATCGGAGAAAGGTCTCATTATATAATGAACGAGTTGAGGATCTTAATAGGGTCACTCAACAGCGTGATGACATAAAGAGGCAGTTGGATGAGTTCATGGCAGGATTTAATGCTATATCTTTGAAGTTAAAGGAAATGTATCAGATGATTACACTGGGAGGTGATGCAGAACTTGAGCTAGTGGACTCTCTGGATCCCTTCTCTGAAGGTGTTGTTTTCAGTGTGAGACCACCAAAGAAGAGTTGGAAGAATATTGCAAACTTGTCTGGTGGTGAAAAGACATTGAGCTCATTAGCTCTTGTTTTTGCACTGCATCATTATAAGCCTACACCTCTCTATGTAATGGATGAAATCGATGCTGCCCTAGACTTCAAGAATGTCTCTATTGTGGGTCATTATGTAAAGGACAGGACCAAGGATGCACAGTTCATAATCATAAGCCTTAGAAACAATATGTTTGAGCTGGCGGATCGACTTGTTGGGATATACAAAACTGATAATTGCACAAAGAGCATTACCATTGATCCAGGGAGGTTCGTGGTTTGTGAAAATGCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1207

Amino Acids

137.2

Weight (kDa)

5.85

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	26 - 669	1.1e-27	RecF/RecN/SMC N terminal domain
AAA_15	PF13175	27 - 410	8.8e-07	AAA ATPase domain
AAA_29	PF13555	29 - 86	7.6e-06	P-loop containing region of AAA domain
AAA_23	PF13476	30 - 292	4.8e-10	AAA domain
AAA_21	PF13304	51 - 120	4.6e-06	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	556 - 615	6.1e-09	SMC proteins Flexible Hinge Domain
SMC_N	PF02463	783 - 1189	9.7e-34	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48600 AT5G48600
fragaria_vesca	FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_2g39941 FvH4_4g18080 FvH4_5g30910 FvH4_5g30910 FvH4_5g30910 FvH4_6g23280
malus_domestica	MD02G1198100.v1.1
prunus_persica	Prupe.3G267300_v2.0.a1 Prupe.3G267300_v2.0.a1
pyrus_communis	pycom02g16170
rosa_chinensis	RchiOBHm_Chr5g0008421 RchiOBHm_Chr6g0300801 RchiOBHm_Chr7g0223681 RchiOBHm_Chr7g0223741 RchiOBHm_Chr7g0226461
rosa_laevigata	RLG00000001729 RLG00000011300 RLG00000031570
rosa_multiflora	Rmu_sc0001470.1_g000005 Rmu_sc0001903.1_g000024 Rmu_sc0002826.1_g000022 Rmu_sc0008947.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232810 Rroxscaffold_3G00235410 Rroxscaffold_7G00167400
rosa_rugosa	Rorug06G0299200 Rorug07G0218700 Rorug07G0219100 Rorug07G0219200 Rorug07G0237300
rosa_samantha	Rh6AG412200 Rh6BG419400 Rh6CG426900 Rh6DG412200 Rh7AG362000 Rh7AG384400 Rh7AG384500 Rh7BG353400 Rh7BG353500 Rh7BG371100 Rh7CG380600 Rh7CG403700 Rh7CG403800 Rh7DG356900 Rh7DG357400 Rh7DG383200
rosa_wichuraiana	Rw7G030730 Rw7G030770 Rw7G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3381
AbsI	CCTCGAGG	1 cut(s)	590
AccB7I	CCANNNNNTGG	2 cut(s)	292, 2024
AccBSI	CCGCTC	1 cut(s)	47
AccI	GTMKAC	3 cut(s)	483, 933, 2820
AccII	CGCG	3 cut(s)	129, 1488, 2022
AccIII	TCCGGA	1 cut(s)	1803
AciI	CCGC	8 cut(s)	8, 45, 743, 1169, 1445, 2022, 2770, 3527
AcoI	YGGCCR	2 cut(s)	27, 2536
AcsI	RAATTY	9 cut(s)	350, 995, 1215, 1225, 1499, 2233, 2617, 2904, 2958
AcuI	CTGAAG	8 cut(s)	471, 497, 935, 1061, 1607, 2393, 2408, 3285
AdeI	CACNNNGTG	1 cut(s)	2024
AfaI	GTAC	1 cut(s)	1339
AfeI	AGCGCT	1 cut(s)	3006
AfiI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2024, 2986, 2998
AflII	CTTAAG	1 cut(s)	1022
AflIII	ACRYGT	1 cut(s)	127
AhdI	GACNNNNNGTC	2 cut(s)	19, 2476
AjnI	CCWGG	6 cut(s)	59, 364, 894, 1908, 2271, 3586
AleI	CACNNNNGTG	1 cut(s)	2057
AloI	GAACNNNNNNTCC	4 cut(s)	297, 329, 3470, 3502
Alw21I	GWGCWC	3 cut(s)	1314, 1975, 3350
Alw26I	GTCTC	5 cut(s)	2382, 2525, 3079, 3280, 3445
Alw44I	GTGCAC	1 cut(s)	1971
AlwNI	CAGNNNCTG	3 cut(s)	292, 2386, 2692
Ama87I	CYCGRG	1 cut(s)	590
Aor13HI	TCCGGA	1 cut(s)	1803
Aor51HI	AGCGCT	1 cut(s)	3006
AoxI	GGCC	5 cut(s)	27, 64, 2397, 2536, 2989
ApaI	GGGCCC	1 cut(s)	68
ApaLI	GTGCAC	1 cut(s)	1971
ApoI	RAATTY	9 cut(s)	350, 995, 1215, 1225, 1499, 2233, 2617, 2904, 2958
Asp700I	GAANNNNTTC	5 cut(s)	360, 576, 1164, 2904, 2934
AspLEI	GCGC	4 cut(s)	1488, 1783, 2130, 3007
AspS9I	GGNCC	6 cut(s)	64, 65, 134, 167, 2989, 3471
AsuC2I	CCSGG	1 cut(s)	1668
AsuHPI	GGTGA	5 cut(s)	275, 530, 2447, 3233, 3344
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	3 cut(s)	134, 167, 3471
BaeGI	GKGCMC	3 cut(s)	68, 1975, 2039
BalI	TGGCCA	1 cut(s)	2538
BamHI	GGATCC	2 cut(s)	560, 3253
BanII	GRGCYC	2 cut(s)	68, 3350
BarI	GAAGNNNNNNTAC	2 cut(s)	2804, 2836
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	3 cut(s)	1314, 1975, 3350
BccI	CCATC	7 cut(s)	26, 338, 1402, 1678, 1961, 2026, 2188
BcgI	CGANNNNNNTGC	2 cut(s)	1679, 1713
BciT130I	CCWGG	6 cut(s)	61, 366, 896, 1910, 2273, 3588
BciVI	GTATCC	1 cut(s)	1656
BcnI	CCSGG	1 cut(s)	1668
BcoDI	GTCTC	5 cut(s)	2382, 2525, 3079, 3280, 3445
BfaI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 2948, 3239, 3425
BfmI	CTRYAG	3 cut(s)	156, 934, 2340
BfoI	RGCGCY	1 cut(s)	3008
BfrI	CTTAAG	1 cut(s)	1022
BfuI	GTATCC	1 cut(s)	1656
BglII	AGATCT	2 cut(s)	1036, 1900
BlpI	GCTNAGC	1 cut(s)	231
Bme1390I	CCNGG	7 cut(s)	61, 366, 896, 1668, 1910, 2273, 3588
Bme18I	GGWCC	3 cut(s)	134, 167, 3471
BmeRI	GACNNNNNGTC	2 cut(s)	19, 2476
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	6 cut(s)	64, 65, 134, 167, 2989, 3471
BmiI	GGNNCC	7 cut(s)	6, 37, 65, 66, 562, 2269, 3255
BmrFI	CCNGG	7 cut(s)	61, 366, 896, 1668, 1910, 2273, 3588
BmrI	ACTGGG	1 cut(s)	3224
BmuI	ACTGGG	1 cut(s)	3224
BpmI	CTGGAG	3 cut(s)	324, 2294, 2451
Bpu10I	CCTNAGC	1 cut(s)	1647
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	5 cut(s)	540, 1175, 2273, 2309, 3254
BpuMI	CCSGG	1 cut(s)	1668
Bsa29I	ATCGAT	1 cut(s)	3414
BsaBI	GATNNNNATC	1 cut(s)	1058
BsaI	GGTCTC	3 cut(s)	2382, 3079, 3280
BsaWI	WCCGGW	2 cut(s)	1659, 1803
BsaXI	ACNNNNNCTCC	4 cut(s)	297, 327, 2058, 2088
Bsc4I	CCNNNNNNNGG	5 cut(s)	292, 1666, 2024, 2986, 2998
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	4 cut(s)	702, 2055, 2539, 3219
Bse3DI	GCAATG	5 cut(s)	196, 210, 1449, 1500, 1874
Bse8I	GATNNNNATC	1 cut(s)	1058
BseAI	TCCGGA	1 cut(s)	1803
BseBI	CCWGG	6 cut(s)	61, 366, 896, 1910, 2273, 3588
BseCI	ATCGAT	1 cut(s)	3414
BseJI	GATNNNNATC	1 cut(s)	1058
BseLI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2024, 2986, 2998
BseMI	GCAATG	5 cut(s)	196, 210, 1449, 1500, 1874
BseMII	CTCAG	6 cut(s)	693, 991, 1248, 1596, 2393, 2493
BseNI	ACTGG	4 cut(s)	702, 2055, 2539, 3219
BseRI	GAGGAG	1 cut(s)	1859
BseSI	GKGCMC	3 cut(s)	68, 1975, 2039
BsgI	GTGCAG	1 cut(s)	1401
Bsh1236I	CGCG	3 cut(s)	129, 1488, 2022
BshFI	GGCC	5 cut(s)	29, 66, 2399, 2538, 2991
BshVI	ATCGAT	1 cut(s)	3414
BsiHKAI	GWGCWC	3 cut(s)	1314, 1975, 3350
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	5 cut(s)	117, 1660, 1667, 1743, 1804
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	5 cut(s)	292, 1666, 2024, 2986, 2998
BsmAI	GTCTC	5 cut(s)	2382, 2525, 3079, 3280, 3445
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	5 cut(s)	29, 66, 2399, 2538, 2991
Bso31I	GGTCTC	3 cut(s)	2382, 3079, 3280
BsoBI	CYCGRG	1 cut(s)	590
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	5 cut(s)	68, 1314, 1975, 2039, 3350
Bsp13I	TCCGGA	1 cut(s)	1803
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp19I	CCATGG	3 cut(s)	24, 1289, 2103
BspACI	CCGC	8 cut(s)	8, 45, 743, 1169, 1445, 2022, 2770, 3527
BspANI	GGCC	5 cut(s)	29, 66, 2399, 2538, 2991
BspCNI	CTCAG	6 cut(s)	694, 990, 1249, 1597, 2392, 2494
BspDI	ATCGAT	1 cut(s)	3414
BspEI	TCCGGA	1 cut(s)	1803
BspFNI	CGCG	3 cut(s)	129, 1488, 2022
BspHI	TCATGA	3 cut(s)	93, 808, 1939
BspLI	GGNNCC	7 cut(s)	6, 37, 65, 66, 562, 2269, 3255
BspMAI	CTGCAG	2 cut(s)	160, 2344
BspTI	CTTAAG	1 cut(s)	1022
BspTNI	GGTCTC	3 cut(s)	2382, 3079, 3280
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	5 cut(s)	196, 210, 1449, 1500, 1874
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	4 cut(s)	702, 2055, 2539, 3219
BssAI	RCCGGY	1 cut(s)	116
BssNAI	GTATAC	1 cut(s)	2821
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	7 cut(s)	24, 68, 720, 1289, 1816, 2103, 3474
Bst1107I	GTATAC	1 cut(s)	2821
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	6 cut(s)	61, 366, 896, 1910, 2273, 3588
Bst4CI	ACNGT	6 cut(s)	434, 938, 1624, 1888, 2513, 3486
Bst6I	CTCTTC	3 cut(s)	662, 1604, 3293
BstAFI	CTTAAG	1 cut(s)	1022
BstAPI	GCANNNNNTGC	1 cut(s)	1922
BstC8I	GCNNGC	8 cut(s)	118, 122, 1447, 1484, 1860, 2185, 2772, 3525
BstDSI	CCRYGG	3 cut(s)	24, 1289, 2103
BstENI	CCTNNNNNAGG	1 cut(s)	2984
BstFNI	CGCG	3 cut(s)	129, 1488, 2022
BstH2I	RGCGCY	1 cut(s)	3008
BstHHI	GCGC	4 cut(s)	1488, 1783, 2130, 3007
BstMAI	GTCTC	5 cut(s)	2382, 2525, 3079, 3280, 3445
BstNI	CCWGG	6 cut(s)	61, 366, 896, 1910, 2273, 3588
BstNSI	RCATGY	1 cut(s)	1646
BstSCI	CCNGG	7 cut(s)	59, 364, 894, 1666, 1908, 2271, 3586
BstSFI	CTRYAG	3 cut(s)	156, 934, 2340
BstSLI	GKGCMC	3 cut(s)	68, 1975, 2039
BstUI	CGCG	3 cut(s)	129, 1488, 2022
BstX2I	RGATCY	7 cut(s)	560, 891, 1018, 1036, 1900, 3100, 3253
BstXI	CCANNNNNNTGG	1 cut(s)	802
BstYI	RGATCY	7 cut(s)	560, 891, 1018, 1036, 1900, 3100, 3253
BstZ17I	GTATAC	1 cut(s)	2821
Bsu15I	ATCGAT	1 cut(s)	3414
BsuI	GTATCC	1 cut(s)	1656
BsuRI	GGCC	5 cut(s)	29, 66, 2399, 2538, 2991
BsuTUI	ATCGAT	1 cut(s)	3414
BtgI	CCRYGG	3 cut(s)	24, 1289, 2103
BtsI	GCAGTG	2 cut(s)	819, 3368
BtsIMutI	CAGTG	9 cut(s)	447, 819, 911, 1884, 2062, 2499, 3212, 3286, 3368
Cac8I	GCNNGC	8 cut(s)	118, 122, 1447, 1484, 1860, 2185, 2772, 3525
CaiI	CAGNNNCTG	3 cut(s)	292, 2386, 2692
CciI	TCATGA	3 cut(s)	93, 808, 1939
CfoI	GCGC	4 cut(s)	1488, 1783, 2130, 3007
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	6 cut(s)	64, 65, 134, 167, 2989, 3471
ClaI	ATCGAT	1 cut(s)	3414
CseI	GACGC	3 cut(s)	45, 118, 2933
Csp6I	GTAC	1 cut(s)	1338
CviQI	GTAC	1 cut(s)	1338
DraI	TTTAAA	1 cut(s)	1356
DraIII	CACNNNGTG	1 cut(s)	2024
DriI	GACNNNNNGTC	2 cut(s)	19, 2476
EaeI	YGGCCR	2 cut(s)	27, 2536
Eam1104I	CTCTTC	3 cut(s)	662, 1604, 3293
Eam1105I	GACNNNNNGTC	2 cut(s)	19, 2476
EarI	CTCTTC	3 cut(s)	662, 1604, 3293
EciI	GGCGGA	1 cut(s)	3542
Ecl136II	GAGCTC	1 cut(s)	3348
Eco130I	CCWWGG	7 cut(s)	24, 68, 720, 1289, 1816, 2103, 3474
Eco24I	GRGCYC	2 cut(s)	68, 3350
Eco31I	GGTCTC	3 cut(s)	2382, 3079, 3280
Eco32I	GATATC	1 cut(s)	2159
Eco47I	GGWCC	3 cut(s)	134, 167, 3471
Eco47III	AGCGCT	1 cut(s)	3006
Eco53kI	GAGCTC	1 cut(s)	3348
Eco57I	CTGAAG	8 cut(s)	471, 497, 935, 1061, 1607, 2393, 2408, 3285
Eco88I	CYCGRG	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	3348
EcoNI	CCTNNNNNAGG	1 cut(s)	2984
EcoO109I	RGGNCCY	2 cut(s)	64, 2989
EcoRI	GAATTC	2 cut(s)	1225, 2233
EcoRII	CCWGG	6 cut(s)	59, 364, 894, 1908, 2271, 3586
EcoRV	GATATC	1 cut(s)	2159
EcoT14I	CCWWGG	7 cut(s)	24, 68, 720, 1289, 1816, 2103, 3474
EcoT38I	GRGCYC	2 cut(s)	68, 3350
ErhI	CCWWGG	7 cut(s)	24, 68, 720, 1289, 1816, 2103, 3474
FalI	AAGNNNNNCTT	6 cut(s)	564, 596, 948, 980, 1065, 1097
FaqI	GGGAC	1 cut(s)	619
FauI	CCCGC	2 cut(s)	1438, 2763
FauNDI	CATATG	3 cut(s)	945, 1927, 2895
FblI	GTMKAC	3 cut(s)	483, 933, 2820
FriOI	GRGCYC	2 cut(s)	68, 3350
FspBI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 2948, 3239, 3425
GlaI	GCGC	4 cut(s)	1487, 1782, 2129, 3006
GsuI	CTGGAG	3 cut(s)	324, 2294, 2451
HaeII	RGCGCY	1 cut(s)	3008
HaeIII	GGCC	5 cut(s)	29, 66, 2399, 2538, 2991
HapII	CCGG	5 cut(s)	117, 1660, 1667, 1743, 1804
HgaI	GACGC	3 cut(s)	45, 118, 2933
HhaI	GCGC	4 cut(s)	1488, 1783, 2130, 3007
Hin6I	GCGC	4 cut(s)	1486, 1781, 2128, 3005
HinP1I	GCGC	4 cut(s)	1486, 1781, 2128, 3005
HincII	GTYRAC	3 cut(s)	484, 2509, 2559
HindII	GTYRAC	3 cut(s)	484, 2509, 2559
HindIII	AAGCTT	4 cut(s)	1349, 1856, 2861, 2933
HpaI	GTTAAC	2 cut(s)	2509, 2559
HpaII	CCGG	5 cut(s)	117, 1660, 1667, 1743, 1804
HphI	GGTGA	5 cut(s)	275, 530, 2447, 3233, 3344
Hpy99I	CGWCG	3 cut(s)	20, 134, 2517
HpyCH4III	ACNGT	6 cut(s)	434, 938, 1624, 1888, 2513, 3486
HspAI	GCGC	4 cut(s)	1486, 1781, 2128, 3005
Kpn2I	TCCGGA	1 cut(s)	1803
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
KspAI	GTTAAC	2 cut(s)	2509, 2559
LmnI	GCTCC	6 cut(s)	4, 41, 53, 919, 2092, 2827
MaeI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 2948, 3239, 3425
MaeIII	GTNAC	6 cut(s)	454, 768, 1825, 1957, 2975, 3112
MbiI	CCGCTC	1 cut(s)	47
MflI	RGATCY	7 cut(s)	560, 891, 1018, 1036, 1900, 3100, 3253
MhlI	GDGCHC	5 cut(s)	68, 1314, 1975, 2039, 3350
MlsI	TGGCCA	1 cut(s)	2538
MluI	ACGCGT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	2538
MlyI	GAGTC	6 cut(s)	29, 489, 1085, 1124, 1621, 3239
MmeI	TCCRAC	6 cut(s)	63, 145, 1170, 1680, 3126, 3284
Mox20I	TGGCCA	1 cut(s)	2538
MreI	CGCCGGCG	1 cut(s)	116
MroI	TCCGGA	1 cut(s)	1803
MroNI	GCCGGC	1 cut(s)	116
MroXI	GAANNNNTTC	5 cut(s)	360, 576, 1164, 2904, 2934
MscI	TGGCCA	1 cut(s)	2538
MslI	CAYNNNNRTG	3 cut(s)	335, 2057, 2709
Msp20I	TGGCCA	1 cut(s)	2538
MspA1I	CMGCKG	2 cut(s)	2386, 3617
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	5 cut(s)	117, 1660, 1667, 1743, 1804
MspR9I	CCNGG	7 cut(s)	61, 366, 896, 1668, 1910, 2273, 3588
MvaI	CCWGG	6 cut(s)	61, 366, 896, 1910, 2273, 3588
MvnI	CGCG	3 cut(s)	129, 1488, 2022
NaeI	GCCGGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	1668
NcoI	CCATGG	3 cut(s)	24, 1289, 2103
NdeI	CATATG	3 cut(s)	945, 1927, 2895
NgoMIV	GCCGGC	1 cut(s)	116
NlaIV	GGNNCC	7 cut(s)	6, 37, 65, 66, 562, 2269, 3255
NmuCI	GTSAC	4 cut(s)	768, 1825, 2975, 3112
NspI	RCATGY	1 cut(s)	1646
OliI	CACNNNNGTG	1 cut(s)	2057
PaeR7I	CTCGAG	1 cut(s)	590
PagI	TCATGA	3 cut(s)	93, 808, 1939
PdiI	GCCGGC	1 cut(s)	118
PdmI	GAANNNNTTC	5 cut(s)	360, 576, 1164, 2904, 2934
PflMI	CCANNNNNTGG	2 cut(s)	292, 2024
PfoI	TCCNGGA	2 cut(s)	364, 894
PleI	GAGTC	6 cut(s)	28, 488, 1085, 1124, 1620, 3239
PpsI	GAGTC	6 cut(s)	28, 488, 1085, 1124, 1620, 3239
PsiI	TTATAA	1 cut(s)	3381
Psp124BI	GAGCTC	1 cut(s)	3350
Psp6I	CCWGG	6 cut(s)	59, 364, 894, 1908, 2271, 3586
PspGI	CCWGG	6 cut(s)	59, 364, 894, 1908, 2271, 3586
PspN4I	GGNNCC	7 cut(s)	6, 37, 65, 66, 562, 2269, 3255
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	6 cut(s)	64, 65, 134, 167, 2989, 3471
PspXI	VCTCGAGB	1 cut(s)	590
PstI	CTGCAG	2 cut(s)	160, 2344
PstNI	CAGNNNCTG	3 cut(s)	292, 2386, 2692
PsuI	RGATCY	7 cut(s)	560, 891, 1018, 1036, 1900, 3100, 3253
PvuII	CAGCTG	2 cut(s)	2386, 3617
RsaI	GTAC	1 cut(s)	1339
RsaNI	GTAC	1 cut(s)	1338
RseI	CAYNNNNRTG	3 cut(s)	335, 2057, 2709
SacI	GAGCTC	1 cut(s)	3350
SalI	GTCGAC	1 cut(s)	482
Sau96I	GGNCC	6 cut(s)	64, 65, 134, 167, 2989, 3471
SchI	GAGTC	6 cut(s)	29, 489, 1085, 1124, 1621, 3239
ScrFI	CCNGG	7 cut(s)	61, 366, 896, 1668, 1910, 2273, 3588
SduI	GDGCHC	5 cut(s)	68, 1314, 1975, 2039, 3350
SfcI	CTRYAG	3 cut(s)	156, 934, 2340
Sfr274I	CTCGAG	1 cut(s)	590
SgrAI	CRCCGGYG	1 cut(s)	116
SinI	GGWCC	3 cut(s)	134, 167, 3471
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	3 cut(s)	335, 2057, 2709
SmlI	CTYRAG	7 cut(s)	555, 590, 1022, 1154, 2252, 2324, 3233
SmoI	CTYRAG	7 cut(s)	555, 590, 1022, 1154, 2252, 2324, 3233
SsiI	CCGC	8 cut(s)	8, 45, 743, 1169, 1445, 2022, 2770, 3527
SspI	AATATT	1 cut(s)	3313
SspMI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 2948, 3239, 3425
SstI	GAGCTC	1 cut(s)	3350
StyD4I	CCNGG	7 cut(s)	59, 364, 894, 1666, 1908, 2271, 3586
StyI	CCWWGG	7 cut(s)	24, 68, 720, 1289, 1816, 2103, 3474
TaaI	ACNGT	6 cut(s)	434, 938, 1624, 1888, 2513, 3486
TaqI	TCGA	6 cut(s)	483, 591, 1133, 1326, 3414, 3532
TaqII	GACCGA	1 cut(s)	122
TatI	WGTACW	1 cut(s)	1337
TauI	GCSGC	1 cut(s)	10
TscAI	CASTG	9 cut(s)	454, 826, 918, 1891, 2062, 2506, 3219, 3286, 3375
TseFI	GTSAC	4 cut(s)	768, 1825, 2975, 3112
Tsp45I	GTSAC	4 cut(s)	768, 1825, 2975, 3112
TspGWI	ACGGA	1 cut(s)	1696
TspRI	CASTG	9 cut(s)	454, 826, 918, 1891, 2062, 2506, 3219, 3286, 3375
Van91I	CCANNNNNTGG	2 cut(s)	292, 2024
Vha464I	CTTAAG	1 cut(s)	1022
VneI	GTGCAC	1 cut(s)	1971
VpaK11BI	GGWCC	3 cut(s)	134, 167, 3471
XagI	CCTNNNNNAGG	1 cut(s)	2984
XapI	RAATTY	9 cut(s)	350, 995, 1215, 1225, 1499, 2233, 2617, 2904, 2958
XbaI	TCTAGA	1 cut(s)	1219
XceI	RCATGY	1 cut(s)	1646
XcmI	CCANNNNNNNNNTGG	3 cut(s)	826, 2531, 3300
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	3 cut(s)	483, 933, 2820
XmnI	GAANNNNTTC	5 cut(s)	360, 576, 1164, 2904, 2934
XspI	CTAG	9 cut(s)	488, 650, 855, 1208, 1220, 1551, 2948, 3239, 3425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.