Rorug07G0218700

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
19518826 .. 19585949
67124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0218700.1

Sequence Viewer

Length: 879 bp
ATGGCTATCACCAAGCAGCCTGAGCGAAACAATGAAGTCGTGAAATCAAGCGATGCATTTGTTGCTCCTGAAATTAATGCATTTGGCCAGTCATTCAGGGATTATAATGCAGAAAGTGAGAGGCAGAAAAGTGTGGAGGAATTTTATCGTTTGAACCACATTAACCAAACGTATGATTTTGTAAAAAGGACGAGAGAGGAGTACAAAAAATTGGATAGAGTGGAAATGAGCATATGGGAATGTTGTGAGCTCCTGAATGAGGTTGTGGATGAGAGTGACCCGGATTTGGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAATTAGAAAAGACTATCCGAATGAAGATTGGCTGCACCTTACCGCTCTCATTCATGATCTTGGGAAAGTGCTTCTTCTTCCTAAGTTTGGAGGACTTCCTCAATGGGCTGTTGTTGGAGACACACATCCTCTTGGGTGCGCTTTTGATGAATCCATCGTTCACCACAAGTACTTCAAGGATAATCCGGATTCCAAAAACCCTGCGTACAATACCAAGAATGGAATTTACAAAGAAGGATGTGGACTAGAAAATGTGATGATCTCATGGGGTCATGATGACTACATGTACATGGTTGCCAAGGAAAATGGGACAACTTTGCCGGAGGCTGGATTGTTTGTTATACGGTATCACTCATTTTATCCTCTACACAAGGCAGGGGCATATACACACCTAATGAACAAGGAAGACAGAGAGAATATGAAGTGGCTTCATATTTTTAACAAATATGACCTCTACAGCAAGAGCAAAGTTCAAGTTGATGTCGACAAGGTCAAGCCTTACTATTTATCCCTTATTAACAAGTACTTCCCAGCGAAGCTAAAATGGTAA

Protein Analysis

292

Amino Acids

34.2

Weight (kDa)

5.76

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIOX PF05153 43 - 292 5.4e-126 Myo-inositol oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AccBSI CCGCTC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 813
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 3 cut(s) 140, 300, 552
AfaI GTAC 5 cut(s) 203, 500, 536, 617, 854
AfiI CCNNNNNNNGG 4 cut(s) 259, 286, 416, 656
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 3 cut(s) 154, 505, 803
AluBI AGCT 3 cut(s) 250, 323, 868
AluI AGCT 3 cut(s) 250, 323, 868
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 441
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 16, 361
ApoI RAATTY 3 cut(s) 140, 300, 552
AseI ATTAAT 1 cut(s) 75
AspLEI GCGC 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 482
BalI TGGCCA 1 cut(s) 87
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 28, 348
BccI CCATC 1 cut(s) 491
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 784
BisI GCNGC 2 cut(s) 17, 362
BlsI GCNGC 2 cut(s) 18, 363
BmcAI AGTACT 2 cut(s) 500, 854
Bme1390I CCNGG 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 741
Bpu10I CCTNAGC 2 cut(s) 21, 324
BpuMI CCSGG 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 627
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 286, 416, 656
Bse1I ACTGG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 514
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 4 cut(s) 274, 295, 454, 572
BseLI CCNNNNNNNGG 4 cut(s) 259, 286, 416, 656
BseMII CTCAG 2 cut(s) 12, 315
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 28, 348
BseYI CCCAGC 1 cut(s) 859
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 281, 515, 650
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 4 cut(s) 259, 286, 416, 656
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 252
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 2 cut(s) 385, 588
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 13, 316
BspEI TCCGGA 1 cut(s) 514
BspHI TCATGA 2 cut(s) 382, 601
BsrBI CCGCTC 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 615
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 2 cut(s) 385, 588
BssT1I CCWWGG 1 cut(s) 627
Bst4CI ACNGT 1 cut(s) 675
BstAPI GCANNNNNTGC 2 cut(s) 62, 313
BstAUI TGTACA 1 cut(s) 615
BstDEI CTNAG 3 cut(s) 21, 324, 411
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 4 cut(s) 274, 295, 454, 572
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 2 cut(s) 388, 591
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 2 cut(s) 385, 588
BstMWI GCNNNNNNNGC 3 cut(s) 22, 62, 313
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 784
BstV1I GCAGC 2 cut(s) 28, 348
BstV2I GAAGAC 1 cut(s) 741
BsuRI GGCC 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 4 cut(s) 274, 295, 454, 572
CciI TCATGA 2 cut(s) 382, 601
CfoI GCGC 1 cut(s) 470
Csp6I GTAC 5 cut(s) 202, 499, 535, 616, 853
CviAII CATG 5 cut(s) 383, 594, 602, 613, 619
CviQI GTAC 5 cut(s) 202, 499, 535, 616, 853
DdeI CTNAG 3 cut(s) 21, 324, 411
DpnI GATC 2 cut(s) 387, 590
DpnII GATC 2 cut(s) 385, 588
EaeI YGGCCR 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 627
EcoT22I ATGCAT 2 cut(s) 58, 82
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 5 cut(s) 386, 597, 605, 616, 622
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 1 cut(s) 652
FatI CATG 5 cut(s) 382, 593, 601, 612, 618
FauNDI CATATG 1 cut(s) 233
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 2 cut(s) 17, 362
FokI GGATG 4 cut(s) 281, 302, 441, 579
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 17, 362
FspBI CTAG 1 cut(s) 575
GlaI GCGC 1 cut(s) 469
GluI GCNGC 2 cut(s) 17, 362
GsaI CCCAGC 1 cut(s) 863
HaeIII GGCC 1 cut(s) 87
HapII CCGG 3 cut(s) 281, 515, 650
HhaI GCGC 1 cut(s) 470
Hin1II CATG 5 cut(s) 386, 597, 605, 616, 622
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 2 cut(s) 479, 518
HpaII CCGG 3 cut(s) 281, 515, 650
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 3 cut(s) 490, 572, 814
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 6 cut(s) 40, 68, 253, 383, 515, 602
Hpy8I GTNNAC 3 cut(s) 490, 572, 814
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 5 cut(s) 56, 80, 110, 316, 364
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 62, 313
HpyF3I CTNAG 3 cut(s) 21, 324, 411
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 5 cut(s) 386, 597, 605, 616, 622
HspAI GCGC 1 cut(s) 468
Kpn2I TCCGGA 1 cut(s) 514
Kzo9I GATC 2 cut(s) 385, 588
LmnI GCTCC 2 cut(s) 70, 255
Lsp1109I GCAGC 2 cut(s) 28, 348
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 387, 590
MbiI CCGCTC 1 cut(s) 374
MboI GATC 2 cut(s) 385, 588
MboII GAAGA 4 cut(s) 365, 395, 398, 746
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 6 cut(s) 72, 140, 209, 300, 330, 552
MluNI TGGCCA 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 424
Mox20I TGGCCA 1 cut(s) 87
Mph1103I ATGCAT 2 cut(s) 58, 82
MroI TCCGGA 1 cut(s) 514
MscI TGGCCA 1 cut(s) 87
MseI TTAA 4 cut(s) 75, 162, 768, 846
MslI CAYNNNNRTG 1 cut(s) 617
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 3 cut(s) 281, 515, 650
MspR9I CCNGG 1 cut(s) 281
MwoI GCNNNNNNNGC 3 cut(s) 22, 62, 313
NciI CCSGG 1 cut(s) 281
NdeI CATATG 1 cut(s) 233
NdeII GATC 2 cut(s) 385, 588
NlaIII CATG 5 cut(s) 386, 597, 605, 616, 622
NmuCI GTSAC 1 cut(s) 275
NsiI ATGCAT 2 cut(s) 58, 82
NspI RCATGY 1 cut(s) 616
PagI TCATGA 2 cut(s) 382, 601
PciI ACATGT 1 cut(s) 612
PfeI GAWTC 2 cut(s) 479, 518
PflFI GACNNNGTC 1 cut(s) 818
PkrI GCNGC 2 cut(s) 18, 363
PscI ACATGT 1 cut(s) 612
PshBI ATTAAT 1 cut(s) 75
PsiI TTATAA 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 859
PsyI GACNNNGTC 1 cut(s) 818
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 5 cut(s) 203, 500, 536, 617, 854
RsaNI GTAC 5 cut(s) 202, 499, 535, 616, 853
RseI CAYNNNNRTG 1 cut(s) 617
SacI GAGCTC 1 cut(s) 252
SalI GTCGAC 1 cut(s) 812
SaqAI TTAA 4 cut(s) 75, 162, 768, 846
SatI GCNGC 2 cut(s) 17, 362
Sau3AI GATC 2 cut(s) 385, 588
ScaI AGTACT 2 cut(s) 500, 854
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 252
SetI ASST 9 cut(s) 173, 252, 264, 325, 369, 723, 783, 822, 870
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 784
SmiMI CAYNNNNRTG 1 cut(s) 617
Sse9I AATT 6 cut(s) 72, 140, 209, 300, 330, 552
SsiI CCGC 1 cut(s) 372
SspMI CTAG 1 cut(s) 575
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 1 cut(s) 675
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 813
TasI AATT 6 cut(s) 72, 140, 209, 300, 330, 552
TatI WGTACW 4 cut(s) 201, 498, 615, 852
TfiI GAWTC 2 cut(s) 479, 518
Tru1I TTAA 4 cut(s) 75, 162, 768, 846
Tru9I TTAA 4 cut(s) 75, 162, 768, 846
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 2 cut(s) 16, 361
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 8 cut(s) 48, 306, 366, 371, 492, 740, 749, 764
Tth111I GACNNNGTC 1 cut(s) 818
VspI ATTAAT 1 cut(s) 75
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 3 cut(s) 140, 300, 552
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 813
XspI CTAG 1 cut(s) 575
ZrmI AGTACT 2 cut(s) 500, 854
Zsp2I ATGCAT 2 cut(s) 58, 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.