resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 46 - 198 | 8.9e-35 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| TIR | PF01582 | 490 - 661 | 7.2e-52 | TIR domain |
| TIR_2 | PF13676 | 492 - 590 | 1e-16 | TIR domain |
| NB-ARC | PF00931 | 672 - 839 | 2.9e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 908 - 974 | 3e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 1167 - 1252 | 1.9e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1182 - 1247 | 4.3e-07 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 119, 455 |
| AatII | GACGTC | 1 cut(s) | 3338 |
| AccI | GTMKAC | 3 cut(s) | 438, 866, 3338 |
| AccII | CGCG | 1 cut(s) | 4591 |
| AciI | CCGC | 5 cut(s) | 422, 911, 1491, 1504, 3256 |
| AclWI | GGATC | 6 cut(s) | 83, 818, 1077, 1090, 1760, 4315 |
| AcuI | CTGAAG | 8 cut(s) | 1395, 2468, 2496, 2561, 3452, 3563, 4091, 4233 |
| AcyI | GRCGYC | 3 cut(s) | 3335, 4353, 4576 |
| AdeI | CACNNNGTG | 1 cut(s) | 1051 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 499, 900, 1454, 2764, 3422, 4282 |
| AflII | CTTAAG | 1 cut(s) | 4003 |
| AflIII | ACRYGT | 2 cut(s) | 917, 3243 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3334 |
| AjiI | CACGTC | 1 cut(s) | 3468 |
| AjnI | CCWGG | 6 cut(s) | 2380, 2841, 2944, 4118, 4637, 4666 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 609, 641, 2723, 2755 |
| Alw21I | GWGCWC | 1 cut(s) | 805 |
| AlwI | GGATC | 6 cut(s) | 83, 818, 1077, 1090, 1760, 4315 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4114 |
| Ama87I | CYCGRG | 1 cut(s) | 4073 |
| AoxI | GGCC | 2 cut(s) | 1792, 2575 |
| ApeKI | GCWGC | 9 cut(s) | 1209, 1212, 2151, 3252, 4102, 4114, 4318, 4593, 4596 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 162, 194 |
| AseI | ATTAAT | 1 cut(s) | 1973 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 551, 771, 1431, 2481, 3507 |
| AspA2I | CCTAGG | 1 cut(s) | 535 |
| AspLEI | GCGC | 1 cut(s) | 4593 |
| AspS9I | GGNCC | 3 cut(s) | 1601, 2378, 3603 |
| AsuHPI | GGTGA | 9 cut(s) | 551, 1160, 1853, 2467, 2779, 3404, 3824, 4234, 4297 |
| AsuII | TTCGAA | 1 cut(s) | 2142 |
| AvaI | CYCGRG | 1 cut(s) | 4073 |
| AvaII | GGWCC | 3 cut(s) | 1601, 2378, 3603 |
| AvrII | CCTAGG | 1 cut(s) | 535 |
| BamHI | GGATCC | 1 cut(s) | 1082 |
| BauI | CACGAG | 1 cut(s) | 497 |
| BbsI | GAAGAC | 5 cut(s) | 451, 3333, 3393, 4130, 4353 |
| Bbv12I | GWGCWC | 1 cut(s) | 805 |
| BbvI | GCAGC | 9 cut(s) | 1196, 1199, 2163, 3264, 4101, 4114, 4305, 4605, 4608 |
| BceAI | ACGGC | 3 cut(s) | 2919, 3317, 4469 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3241, 3275 |
| BciT130I | CCWGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| BclI | TGATCA | 2 cut(s) | 216, 1000 |
| BfaI | CTAG | 9 cut(s) | 116, 455, 536, 581, 677, 2585, 3665, 3893, 3944 |
| BfmI | CTRYAG | 4 cut(s) | 2795, 3794, 3860, 4428 |
| BfrI | CTTAAG | 1 cut(s) | 4003 |
| BglII | AGATCT | 1 cut(s) | 3310 |
| BlnI | CCTAGG | 1 cut(s) | 535 |
| BmcAI | AGTACT | 2 cut(s) | 2299, 4537 |
| Bme1390I | CCNGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| Bme18I | GGWCC | 3 cut(s) | 1601, 2378, 3603 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3334 |
| BmeT110I | CYCGRG | 1 cut(s) | 4073 |
| BmgBI | CACGTC | 1 cut(s) | 3468 |
| BmgT120I | GGNCC | 3 cut(s) | 1601, 2378, 3603 |
| BmiI | GGNNCC | 4 cut(s) | 1084, 3360, 3604, 4261 |
| BmrFI | CCNGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| BmrI | ACTGGG | 2 cut(s) | 1742, 4628 |
| BmuI | ACTGGG | 2 cut(s) | 1742, 4628 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4229 |
| BpiI | GAAGAC | 5 cut(s) | 451, 3333, 3393, 4130, 4353 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 289, 321, 799, 831 |
| BpmI | CTGGAG | 4 cut(s) | 1264, 3327, 3605, 4296 |
| Bpu14I | TTCGAA | 1 cut(s) | 2142 |
| Bsa29I | ATCGAT | 3 cut(s) | 81, 1595, 3756 |
| BsaBI | GATNNNNATC | 2 cut(s) | 87, 1764 |
| BsaHI | GRCGYC | 3 cut(s) | 3335, 4353, 4576 |
| BsaI | GGTCTC | 3 cut(s) | 24, 368, 802 |
| BsaWI | WCCGGW | 2 cut(s) | 1454, 3220 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 225, 255, 2430, 2460, 2823, 2853, 3325, 3355 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 499, 900, 1454, 2764, 3422, 4282 |
| Bse1I | ACTGG | 6 cut(s) | 1247, 1356, 1748, 3322, 3649, 4623 |
| Bse8I | GATNNNNATC | 2 cut(s) | 87, 1764 |
| BseBI | CCWGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| BseCI | ATCGAT | 3 cut(s) | 81, 1595, 3756 |
| BseJI | GATNNNNATC | 2 cut(s) | 87, 1764 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 499, 900, 1454, 2764, 3422, 4282 |
| BseNI | ACTGG | 6 cut(s) | 1247, 1356, 1748, 3322, 3649, 4623 |
| BseRI | GAGGAG | 2 cut(s) | 246, 1437 |
| BseXI | GCAGC | 9 cut(s) | 1196, 1199, 2163, 3264, 4101, 4114, 4305, 4605, 4608 |
| BseYI | CCCAGC | 1 cut(s) | 4474 |
| BsgI | GTGCAG | 3 cut(s) | 799, 2217, 3036 |
| Bsh1236I | CGCG | 1 cut(s) | 4591 |
| BshFI | GGCC | 2 cut(s) | 1794, 2577 |
| BshVI | ATCGAT | 3 cut(s) | 81, 1595, 3756 |
| BsiHKAI | GWGCWC | 1 cut(s) | 805 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4073 |
| BsiSI | CCGG | 3 cut(s) | 1025, 1455, 3221 |
| BsiWI | CGTACG | 1 cut(s) | 1467 |
| BslFI | GGGAC | 3 cut(s) | 3616, 3842, 4486 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 499, 900, 1454, 2764, 3422, 4282 |
| BsmBI | CGTCTC | 1 cut(s) | 3423 |
| BsmFI | GGGAC | 3 cut(s) | 3616, 3842, 4486 |
| BsmI | GAATGC | 6 cut(s) | 154, 904, 1715, 2936, 3480, 4819 |
| BsnI | GGCC | 2 cut(s) | 1794, 2577 |
| Bso31I | GGTCTC | 3 cut(s) | 24, 368, 802 |
| BsoBI | CYCGRG | 1 cut(s) | 4073 |
| Bsp119I | TTCGAA | 1 cut(s) | 2142 |
| Bsp1286I | GDGCHC | 1 cut(s) | 805 |
| Bsp1407I | TGTACA | 2 cut(s) | 2251, 3392 |
| Bsp19I | CCATGG | 1 cut(s) | 894 |
| BspACI | CCGC | 5 cut(s) | 422, 911, 1491, 1504, 3256 |
| BspANI | GGCC | 2 cut(s) | 1794, 2577 |
| BspDI | ATCGAT | 3 cut(s) | 81, 1595, 3756 |
| BspFNI | CGCG | 1 cut(s) | 4591 |
| BspLI | GGNNCC | 4 cut(s) | 1084, 3360, 3604, 4261 |
| BspMAI | CTGCAG | 2 cut(s) | 3798, 4432 |
| BspPI | GGATC | 6 cut(s) | 83, 818, 1077, 1090, 1760, 4315 |
| BspQI | GCTCTTC | 2 cut(s) | 2487, 2934 |
| BspT104I | TTCGAA | 1 cut(s) | 2142 |
| BspTI | CTTAAG | 1 cut(s) | 4003 |
| BspTNI | GGTCTC | 3 cut(s) | 24, 368, 802 |
| BsrGI | TGTACA | 2 cut(s) | 2251, 3392 |
| BsrI | ACTGG | 6 cut(s) | 1247, 1356, 1748, 3322, 3649, 4623 |
| BssNAI | GTATAC | 1 cut(s) | 867 |
| BssNI | GRCGYC | 3 cut(s) | 3335, 4353, 4576 |
| BssSI | CACGAG | 1 cut(s) | 497 |
| BssT1I | CCWWGG | 7 cut(s) | 535, 688, 894, 985, 2720, 3498, 4417 |
| Bst1107I | GTATAC | 1 cut(s) | 867 |
| Bst2BI | CACGAG | 1 cut(s) | 497 |
| Bst2UI | CCWGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| Bst4CI | ACNGT | 9 cut(s) | 178, 188, 1365, 2816, 3168, 3392, 3674, 3864, 4774 |
| Bst6I | CTCTTC | 3 cut(s) | 1620, 2487, 2934 |
| BstACI | GRCGYC | 3 cut(s) | 3335, 4353, 4576 |
| BstAFI | CTTAAG | 1 cut(s) | 4003 |
| BstAUI | TGTACA | 2 cut(s) | 2251, 3392 |
| BstBI | TTCGAA | 1 cut(s) | 2142 |
| BstC8I | GCNNGC | 7 cut(s) | 372, 1357, 3296, 3581, 4100, 4152, 4376 |
| BstDSI | CCRYGG | 1 cut(s) | 894 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 497 |
| BstFNI | CGCG | 1 cut(s) | 4591 |
| BstHHI | GCGC | 1 cut(s) | 4593 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 352, 1673, 1703, 3014, 4111, 4123, 4582 |
| BstNI | CCWGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| BstNSI | RCATGY | 7 cut(s) | 882, 921, 964, 2754, 3247, 3298, 4154 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4229 |
| BstSCI | CCNGG | 6 cut(s) | 2380, 2841, 2944, 4118, 4637, 4666 |
| BstSFI | CTRYAG | 4 cut(s) | 2795, 3794, 3860, 4428 |
| BstUI | CGCG | 1 cut(s) | 4591 |
| BstV1I | GCAGC | 9 cut(s) | 1196, 1199, 2163, 3264, 4101, 4114, 4305, 4605, 4608 |
| BstV2I | GAAGAC | 5 cut(s) | 451, 3333, 3393, 4130, 4353 |
| BstX2I | RGATCY | 4 cut(s) | 88, 1082, 3310, 4307 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2525 |
| BstYI | RGATCY | 4 cut(s) | 88, 1082, 3310, 4307 |
| BstZ17I | GTATAC | 1 cut(s) | 867 |
| Bsu15I | ATCGAT | 3 cut(s) | 81, 1595, 3756 |
| BsuRI | GGCC | 2 cut(s) | 1794, 2577 |
| BsuTUI | ATCGAT | 3 cut(s) | 81, 1595, 3756 |
| BtgI | CCRYGG | 1 cut(s) | 894 |
| BtgZI | GCGATG | 1 cut(s) | 2731 |
| BtrI | CACGTC | 1 cut(s) | 3468 |
| BtsI | GCAGTG | 5 cut(s) | 309, 1275, 1312, 1530, 3492 |
| Cac8I | GCNNGC | 7 cut(s) | 372, 1357, 3296, 3581, 4100, 4152, 4376 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4114 |
| CfoI | GCGC | 1 cut(s) | 4593 |
| Cfr13I | GGNCC | 3 cut(s) | 1601, 2378, 3603 |
| ClaI | ATCGAT | 3 cut(s) | 81, 1595, 3756 |
| CseI | GACGC | 3 cut(s) | 3529, 4361, 4565 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3384, 3419 |
| DraIII | CACNNNGTG | 1 cut(s) | 1051 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 119, 455 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3334 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 119, 455 |
| Eam1104I | CTCTTC | 3 cut(s) | 1620, 2487, 2934 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3334 |
| EarI | CTCTTC | 3 cut(s) | 1620, 2487, 2934 |
| Eco130I | CCWWGG | 7 cut(s) | 535, 688, 894, 985, 2720, 3498, 4417 |
| Eco31I | GGTCTC | 3 cut(s) | 24, 368, 802 |
| Eco32I | GATATC | 1 cut(s) | 974 |
| Eco47I | GGWCC | 3 cut(s) | 1601, 2378, 3603 |
| Eco57I | CTGAAG | 8 cut(s) | 1395, 2468, 2496, 2561, 3452, 3563, 4091, 4233 |
| Eco88I | CYCGRG | 1 cut(s) | 4073 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 497 |
| EcoRI | GAATTC | 2 cut(s) | 4204, 4642 |
| EcoRII | CCWGG | 6 cut(s) | 2380, 2841, 2944, 4118, 4637, 4666 |
| EcoRV | GATATC | 1 cut(s) | 974 |
| EcoT14I | CCWWGG | 7 cut(s) | 535, 688, 894, 985, 2720, 3498, 4417 |
| EcoT22I | ATGCAT | 3 cut(s) | 291, 1715, 2889 |
| ErhI | CCWWGG | 7 cut(s) | 535, 688, 894, 985, 2720, 3498, 4417 |
| Esp3I | CGTCTC | 1 cut(s) | 3423 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 536, 568 |
| FaqI | GGGAC | 3 cut(s) | 3616, 3842, 4486 |
| FauI | CCCGC | 1 cut(s) | 1511 |
| FauNDI | CATATG | 3 cut(s) | 162, 887, 1771 |
| FbaI | TGATCA | 2 cut(s) | 216, 1000 |
| FblI | GTMKAC | 3 cut(s) | 438, 866, 3338 |
| FspBI | CTAG | 9 cut(s) | 116, 455, 536, 581, 677, 2585, 3665, 3893, 3944 |
| GlaI | GCGC | 1 cut(s) | 4592 |
| GsaI | CCCAGC | 1 cut(s) | 4478 |
| GsuI | CTGGAG | 4 cut(s) | 1264, 3327, 3605, 4296 |
| HaeIII | GGCC | 2 cut(s) | 1794, 2577 |
| HapII | CCGG | 3 cut(s) | 1025, 1455, 3221 |
| HgaI | GACGC | 3 cut(s) | 3529, 4361, 4565 |
| HhaI | GCGC | 1 cut(s) | 4593 |
| Hin1I | GRCGYC | 3 cut(s) | 3335, 4353, 4576 |
| Hin6I | GCGC | 1 cut(s) | 4591 |
| HinP1I | GCGC | 1 cut(s) | 4591 |
| HincII | GTYRAC | 2 cut(s) | 790, 3339 |
| HindII | GTYRAC | 2 cut(s) | 790, 3339 |
| HindIII | AAGCTT | 5 cut(s) | 1101, 1357, 3577, 3800, 4124 |
| HpaI | GTTAAC | 1 cut(s) | 790 |
| HpaII | CCGG | 3 cut(s) | 1025, 1455, 3221 |
| HphI | GGTGA | 9 cut(s) | 551, 1160, 1853, 2467, 2779, 3404, 3824, 4234, 4297 |
| Hpy99I | CGWCG | 3 cut(s) | 3013, 3340, 4355 |
| HpyCH4III | ACNGT | 9 cut(s) | 178, 188, 1365, 2816, 3168, 3392, 3674, 3864, 4774 |
| HpyCH4IV | ACGT | 8 cut(s) | 417, 927, 1466, 2953, 3335, 3467, 4146, 4328 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 352, 1673, 1703, 3014, 4111, 4123, 4582 |
| HpySE526I | ACGT | 8 cut(s) | 417, 927, 1466, 2953, 3335, 3467, 4146, 4328 |
| Hsp92I | GRCGYC | 3 cut(s) | 3335, 4353, 4576 |
| HspAI | GCGC | 1 cut(s) | 4591 |
| Ksp22I | TGATCA | 2 cut(s) | 216, 1000 |
| KspAI | GTTAAC | 1 cut(s) | 790 |
| LguI | GCTCTTC | 2 cut(s) | 2487, 2934 |
| LmnI | GCTCC | 8 cut(s) | 233, 379, 896, 3291, 3586, 3752, 4259, 4546 |
| Lsp1109I | GCAGC | 9 cut(s) | 1196, 1199, 2163, 3264, 4101, 4114, 4305, 4605, 4608 |
| MaeI | CTAG | 9 cut(s) | 116, 455, 536, 581, 677, 2585, 3665, 3893, 3944 |
| MaeII | ACGT | 8 cut(s) | 417, 927, 1466, 2953, 3335, 3467, 4146, 4328 |
| MfeI | CAATTG | 4 cut(s) | 1620, 2345, 3069, 3630 |
| MflI | RGATCY | 4 cut(s) | 88, 1082, 3310, 4307 |
| MhlI | GDGCHC | 1 cut(s) | 805 |
| MlyI | GAGTC | 4 cut(s) | 1637, 3334, 4223, 4376 |
| MmeI | TCCRAC | 6 cut(s) | 640, 1099, 1263, 2506, 3068, 4462 |
| Mph1103I | ATGCAT | 3 cut(s) | 291, 1715, 2889 |
| MroXI | GAANNNNTTC | 5 cut(s) | 551, 771, 1431, 2481, 3507 |
| MslI | CAYNNNNRTG | 3 cut(s) | 996, 2016, 3597 |
| MspA1I | CMGCKG | 3 cut(s) | 911, 1491, 2521 |
| MspCI | CTTAAG | 1 cut(s) | 4003 |
| MspI | CCGG | 3 cut(s) | 1025, 1455, 3221 |
| MspR9I | CCNGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| MunI | CAATTG | 4 cut(s) | 1620, 2345, 3069, 3630 |
| Mva1269I | GAATGC | 6 cut(s) | 154, 904, 1715, 2936, 3480, 4819 |
| MvaI | CCWGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| MvnI | CGCG | 1 cut(s) | 4591 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 352, 1673, 1703, 3014, 4111, 4123, 4582 |
| NcoI | CCATGG | 1 cut(s) | 894 |
| NdeI | CATATG | 3 cut(s) | 162, 887, 1771 |
| NlaIV | GGNNCC | 4 cut(s) | 1084, 3360, 3604, 4261 |
| NmeAIII | GCCGAG | 1 cut(s) | 3902 |
| NmuCI | GTSAC | 6 cut(s) | 3, 941, 1307, 1414, 4222, 4324 |
| NsiI | ATGCAT | 3 cut(s) | 291, 1715, 2889 |
| NspI | RCATGY | 7 cut(s) | 882, 921, 964, 2754, 3247, 3298, 4154 |
| NspV | TTCGAA | 1 cut(s) | 2142 |
| PaeI | GCATGC | 2 cut(s) | 3298, 4154 |
| PaeR7I | CTCGAG | 1 cut(s) | 4073 |
| PciI | ACATGT | 2 cut(s) | 917, 3243 |
| PciSI | GCTCTTC | 2 cut(s) | 2487, 2934 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4573 |
| PctI | GAATGC | 6 cut(s) | 154, 904, 1715, 2936, 3480, 4819 |
| PdmI | GAANNNNTTC | 5 cut(s) | 551, 771, 1431, 2481, 3507 |
| Pfl23II | CGTACG | 1 cut(s) | 1467 |
| PflFI | GACNNNGTC | 1 cut(s) | 1298 |
| PfoI | TCCNGGA | 1 cut(s) | 2841 |
| PleI | GAGTC | 4 cut(s) | 1636, 3334, 4222, 4375 |
| PpsI | GAGTC | 4 cut(s) | 1636, 3334, 4222, 4375 |
| PscI | ACATGT | 2 cut(s) | 917, 3243 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4229 |
| PshBI | ATTAAT | 1 cut(s) | 1973 |
| Psp6I | CCWGG | 6 cut(s) | 2380, 2841, 2944, 4118, 4637, 4666 |
| PspFI | CCCAGC | 1 cut(s) | 4474 |
| PspGI | CCWGG | 6 cut(s) | 2380, 2841, 2944, 4118, 4637, 4666 |
| PspLI | CGTACG | 1 cut(s) | 1467 |
| PspN4I | GGNNCC | 4 cut(s) | 1084, 3360, 3604, 4261 |
| PspPI | GGNCC | 3 cut(s) | 1601, 2378, 3603 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1460, 1492 |
| PstI | CTGCAG | 2 cut(s) | 3798, 4432 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4114 |
| PsuI | RGATCY | 4 cut(s) | 88, 1082, 3310, 4307 |
| PsyI | GACNNNGTC | 1 cut(s) | 1298 |
| PvuII | CAGCTG | 1 cut(s) | 2521 |
| RseI | CAYNNNNRTG | 3 cut(s) | 996, 2016, 3597 |
| SalI | GTCGAC | 1 cut(s) | 3337 |
| SapI | GCTCTTC | 2 cut(s) | 2487, 2934 |
| Sau96I | GGNCC | 3 cut(s) | 1601, 2378, 3603 |
| ScaI | AGTACT | 2 cut(s) | 2299, 4537 |
| SchI | GAGTC | 4 cut(s) | 1637, 3334, 4223, 4376 |
| ScrFI | CCNGG | 6 cut(s) | 2382, 2843, 2946, 4120, 4639, 4668 |
| SduI | GDGCHC | 1 cut(s) | 805 |
| SfcI | CTRYAG | 4 cut(s) | 2795, 3794, 3860, 4428 |
| Sfr274I | CTCGAG | 1 cut(s) | 4073 |
| SfuI | TTCGAA | 1 cut(s) | 2142 |
| SinI | GGWCC | 3 cut(s) | 1601, 2378, 3603 |
| SlaI | CTCGAG | 1 cut(s) | 4073 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 996, 2016, 3597 |
| SphI | GCATGC | 2 cut(s) | 3298, 4154 |
| SsiI | CCGC | 5 cut(s) | 422, 911, 1491, 1504, 3256 |
| SspI | AATATT | 2 cut(s) | 3516, 4704 |
| SspMI | CTAG | 9 cut(s) | 116, 455, 536, 581, 677, 2585, 3665, 3893, 3944 |
| StyD4I | CCNGG | 6 cut(s) | 2380, 2841, 2944, 4118, 4637, 4666 |
| StyI | CCWWGG | 7 cut(s) | 535, 688, 894, 985, 2720, 3498, 4417 |
| TaaI | ACNGT | 9 cut(s) | 178, 188, 1365, 2816, 3168, 3392, 3674, 3864, 4774 |
| TaiI | ACGT | 8 cut(s) | 420, 930, 1469, 2956, 3338, 3470, 4149, 4331 |
| TatI | WGTACW | 6 cut(s) | 2251, 2297, 2989, 3392, 4163, 4535 |
| TauI | GCSGC | 1 cut(s) | 3258 |
| TseFI | GTSAC | 6 cut(s) | 3, 941, 1307, 1414, 4222, 4324 |
| TseI | GCWGC | 9 cut(s) | 1209, 1212, 2151, 3252, 4102, 4114, 4318, 4593, 4596 |
| Tsp45I | GTSAC | 6 cut(s) | 3, 941, 1307, 1414, 4222, 4324 |
| TspGWI | ACGGA | 4 cut(s) | 1735, 1795, 4119, 4190 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1298 |
| Vha464I | CTTAAG | 1 cut(s) | 4003 |
| VpaK11BI | GGWCC | 3 cut(s) | 1601, 2378, 3603 |
| VspI | ATTAAT | 1 cut(s) | 1973 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 497 |
| XbaI | TCTAGA | 1 cut(s) | 676 |
| XceI | RCATGY | 7 cut(s) | 882, 921, 964, 2754, 3247, 3298, 4154 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 892, 1050 |
| XhoI | CTCGAG | 1 cut(s) | 4073 |
| XmaJI | CCTAGG | 1 cut(s) | 535 |
| XmiI | GTMKAC | 3 cut(s) | 438, 866, 3338 |
| XmnI | GAANNNNTTC | 5 cut(s) | 551, 771, 1431, 2481, 3507 |
| XspI | CTAG | 9 cut(s) | 116, 455, 536, 581, 677, 2585, 3665, 3893, 3944 |
| ZraI | GACGTC | 1 cut(s) | 3336 |
| ZrmI | AGTACT | 2 cut(s) | 2299, 4537 |
| Zsp2I | ATGCAT | 3 cut(s) | 291, 1715, 2889 |