Rmu_sc0009028.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009028.1
OG0000129
Physical Location & Seq
Forward (+)
8 .. 2396
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009028.1_g000001.1.cds

Sequence Viewer

Length: 1977 bp
atgtcggctttttcaacaactgaggggggatctttagagctgcatgtggcatataagcatacagaggggaaacatgttgatctttgtccagccgcaaatcgagcgtttgtagaacaaacaacttcctggtcaaaattcgcttctgtacttcctagagatgaaattccagagtggttcagcactatatctaccagaaatcccatatcaatctcgatacctcaaaatctggccgatgataacgagtggaggggatttgccgcgtgtgttatattctcagccaaggggcatactgatatctcccttattgaaccggatcctgattttcttaattactcgtatcaaatcacattggaaactgatgttgtgcaactggaaccatttgtgttcgaggggtatgaagcactccaccgctttggatcaagttctcatatgcttatgattttctataaatcaagtggggagattccacagtgggggttaaatgaatcaactgtggtgagagctatatttgaaaccaccaatccatccatggtggtccagaaatgtggaatccgtctagtctatgagcaagatgctggatggtatcccagaataatctacgggcatggtccgatttggctgaatgatgttgaggacgacgcctctgatgttgaggacgatgtctctgatgttgaggacgacgcctccgtattggagtctggctggcttggtcagtctttggaatgggagaaattcattccacccttggaagaagaatccacactcgtgcggagaaagaacctcgagtctgttcttccaagataccttgaggcactacacagtgattctaaaatgttcaaatttaacctcaaagagagcccagggtggtttgagttgtttgtccctaatatgaggtcaaatttgatcgaagagtcaatcgagctgcctcaaaatctacacaagagcaagaagtggatgggatttgcaatatgcgcatcacttgtagaggaagtggggcagcagacaatgaaagaggacaactattgggtatctgttacactatcaacaggggataaatttggtatgggtgtgtcccgagtacttaagcacgtcaggccattgtcagaagaacatcatcaactattggttatttacataccgcgagcacagattcccgaagtgttgctcactcagacattaataactgcaatggacttttgtatcatgatcagtgatagccctcatgtaaaggttcaaacatgtgggtcacgtattgtgtaccaggaagatatattagggtttgccaatacaattatccggtgtatccagagggaagattcacttgaatttcatgataagttagtgatagaagaatggataaagttgatacgattgcaaggtctccatatagagggaatgaaagaacgggattccagaaccccacgggaaaaatacattgatttgtactcacgaaaatatagaaattgggaatggtctgaccctcgtcctgtttgttgtgccttcgagagcgttgaaatctccaagctgaaatggttcatgcctttcatcaaccaaggcaactctgtagaaattcaactgcctctgaatgtgttcgatgatgataattggttggggtttgccgtatgttctcagttgtcccacgagcaatatccacacattagtcttggcaatagtactcttgattcagagagagttgtgcttagttatcgtctggactctgatgttgcttggcacggcttatttgatttcctgatgcatgaagatattaatgtactcgagccatcctatgcgactcggttcctttatataccgcgcactgaagttcttagtaagatgtggaggcaatgcaaattggctaggataactatgtggttctctagcccatgcttagcagtgcatagttgtgcccttcgtctactatttaaggaggacattgaacatcttgtagaaacactgacccacgccgaattaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

658

Amino Acids

75.85

Weight (kDa)

4.99

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 973
AccI GTMKAC 1 cut(s) 1915
AccII CGCG 3 cut(s) 260, 1141, 1813
AciI CCGC 6 cut(s) 93, 258, 409, 769, 1139, 1811
AclWI GGATC 4 cut(s) 37, 308, 321, 424
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 8 cut(s) 134, 162, 731, 839, 898, 1055, 1325, 1569
AcuI CTGAAG 1 cut(s) 1839
AcyI GRCGYC 2 cut(s) 639, 681
AfaI GTAC 6 cut(s) 147, 1080, 1259, 1445, 1675, 1773
AfiI CCNNNNNNNGG 2 cut(s) 473, 1390
AflII CTTAAG 1 cut(s) 1082
AflIII ACRYGT 2 cut(s) 73, 1238
AgsI TTSAA 9 cut(s) 15, 308, 512, 838, 1235, 1325, 1514, 1574, 1937
AjiI CACGTC 1 cut(s) 1090
AjnI CCWGG 3 cut(s) 125, 859, 1260
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 4 cut(s) 40, 503, 922, 1525
AluI AGCT 4 cut(s) 40, 503, 922, 1525
Alw21I GWGCWC 1 cut(s) 1147
Alw26I GTCTC 2 cut(s) 667, 1385
AlwI GGATC 4 cut(s) 37, 308, 321, 424
Ama87I CYCGRG 3 cut(s) 782, 1074, 1775
AoxI GGCC 2 cut(s) 228, 1094
ApeKI GCWGC 3 cut(s) 40, 922, 997
ApoI RAATTY 8 cut(s) 134, 162, 731, 839, 898, 1055, 1325, 1569
AseI ATTAAT 2 cut(s) 1178, 1767
Asp700I GAANNNNTTC 2 cut(s) 1532, 1589
AspLEI GCGC 2 cut(s) 974, 1815
AspS9I GGNCC 2 cut(s) 535, 608
AsuHPI GGTGA 1 cut(s) 508
AvaI CYCGRG 3 cut(s) 782, 1074, 1775
AvaII GGWCC 2 cut(s) 535, 608
BaeGI GKGCMC 1 cut(s) 1909
BaeI ACNNNNGTAYC 2 cut(s) 1183, 1216
BamHI GGATCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 860
BauI CACGAG 2 cut(s) 764, 1640
Bbv12I GWGCWC 1 cut(s) 1147
BbvI GCAGC 3 cut(s) 27, 909, 1009
BccI CCATC 4 cut(s) 532, 573, 949, 1789
BceAI ACGGC 2 cut(s) 1604, 1750
BciT130I CCWGG 3 cut(s) 127, 861, 1262
BciVI GTATCC 2 cut(s) 594, 1313
BclI TGATCA 1 cut(s) 1206
BcoDI GTCTC 2 cut(s) 667, 1385
BfaI CTAG 4 cut(s) 153, 557, 1857, 1878
BfmI CTRYAG 1 cut(s) 1563
BfrI CTTAAG 1 cut(s) 1082
BfuI GTATCC 2 cut(s) 594, 1313
BisI GCNGC 5 cut(s) 41, 93, 258, 923, 998
BlpI GCTNAGC 1 cut(s) 1888
BlsI GCNGC 5 cut(s) 42, 94, 259, 924, 999
BmcAI AGTACT 2 cut(s) 1080, 1675
Bme1390I CCNGG 3 cut(s) 127, 861, 1262
Bme18I GGWCC 2 cut(s) 535, 608
BmeT110I CYCGRG 3 cut(s) 782, 1074, 1775
BmgBI CACGTC 1 cut(s) 1090
BmgT120I GGNCC 2 cut(s) 535, 608
BmiI GGNNCC 3 cut(s) 315, 375, 1799
BmrFI CCNGG 3 cut(s) 127, 861, 1262
BmsI GCATC 3 cut(s) 562, 983, 1743
BoxI GACNNNNGTC 1 cut(s) 1482
Bpu1102I GCTNAGC 1 cut(s) 1888
BpuEI CTTGAG 1 cut(s) 827
BsaAI YACGTR 1 cut(s) 1250
BsaHI GRCGYC 2 cut(s) 639, 681
BsaI GGTCTC 1 cut(s) 1385
BsaJI CCNNGG 7 cut(s) 279, 528, 744, 859, 860, 1421, 1552
BsaWI WCCGGW 2 cut(s) 310, 1296
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 1390
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 2 cut(s) 1194, 1850
BseBI CCWGG 3 cut(s) 127, 861, 1262
BseDI CCNNGG 7 cut(s) 279, 528, 744, 859, 860, 1421, 1552
BseGI GGATG 4 cut(s) 524, 584, 960, 1781
BseLI CCNNNNNNNGG 2 cut(s) 473, 1390
BseMI GCAATG 2 cut(s) 1194, 1850
BseMII CTCAG 4 cut(s) 12, 288, 1184, 1643
BseNI ACTGG 1 cut(s) 375
BseSI GKGCMC 1 cut(s) 1909
BseXI GCAGC 3 cut(s) 27, 909, 1009
Bsh1236I CGCG 3 cut(s) 260, 1141, 1813
BshFI GGCC 2 cut(s) 230, 1096
BsiHKAI GWGCWC 1 cut(s) 1147
BsiHKCI CYCGRG 3 cut(s) 782, 1074, 1775
BsiSI CCGG 2 cut(s) 311, 1297
BslFI GGGAC 3 cut(s) 866, 1057, 1621
BslI CCNNNNNNNGG 2 cut(s) 473, 1390
BsmAI GTCTC 2 cut(s) 667, 1385
BsmFI GGGAC 3 cut(s) 866, 1057, 1621
BsnI GGCC 2 cut(s) 230, 1096
Bso31I GGTCTC 1 cut(s) 1385
BsoBI CYCGRG 3 cut(s) 782, 1074, 1775
Bsp1286I GDGCHC 3 cut(s) 860, 1147, 1909
Bsp143I GATC 6 cut(s) 29, 79, 313, 416, 903, 1206
Bsp1720I GCTNAGC 1 cut(s) 1888
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 6 cut(s) 93, 258, 409, 769, 1139, 1811
BspANI GGCC 2 cut(s) 230, 1096
BspCNI CTCAG 4 cut(s) 13, 287, 1183, 1642
BspFNI CGCG 3 cut(s) 260, 1141, 1813
BspHI TCATGA 2 cut(s) 1203, 1330
BspLI GGNNCC 3 cut(s) 315, 375, 1799
BspPI GGATC 4 cut(s) 37, 308, 321, 424
BspTI CTTAAG 1 cut(s) 1082
BspTNI GGTCTC 1 cut(s) 1385
BsrDI GCAATG 2 cut(s) 1194, 1850
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 7 cut(s) 279, 528, 744, 859, 860, 1421, 1552
BssMI GATC 6 cut(s) 29, 79, 313, 416, 903, 1206
BssNI GRCGYC 2 cut(s) 639, 681
BssSI CACGAG 2 cut(s) 764, 1640
BssT1I CCWWGG 4 cut(s) 279, 528, 744, 1552
Bst2BI CACGAG 2 cut(s) 764, 1640
Bst2UI CCWGG 3 cut(s) 127, 861, 1262
Bst4CI ACNGT 3 cut(s) 471, 493, 821
Bst6I CTCTTC 1 cut(s) 903
BstACI GRCGYC 2 cut(s) 639, 681
BstAFI CTTAAG 1 cut(s) 1082
BstBAI YACGTR 1 cut(s) 1250
BstC8I GCNNGC 2 cut(s) 704, 1143
BstDEI CTNAG 7 cut(s) 21, 274, 1170, 1629, 1700, 1826, 1888
BstDSI CCRYGG 2 cut(s) 528, 1421
BstF5I GGATG 4 cut(s) 524, 584, 960, 1781
BstFNI CGCG 3 cut(s) 260, 1141, 1813
BstHHI GCGC 2 cut(s) 974, 1815
BstKTI GATC 6 cut(s) 32, 82, 316, 419, 906, 1209
BstMAI GTCTC 2 cut(s) 667, 1385
BstMBI GATC 6 cut(s) 29, 79, 313, 416, 903, 1206
BstMWI GCNNNNNNNGC 3 cut(s) 101, 971, 1093
BstNI CCWGG 3 cut(s) 127, 861, 1262
BstNSI RCATGY 3 cut(s) 47, 77, 1242
BstPAI GACNNNNGTC 1 cut(s) 1482
BstSCI CCNGG 3 cut(s) 125, 859, 1260
BstSFI CTRYAG 1 cut(s) 1563
BstSLI GKGCMC 1 cut(s) 1909
BstUI CGCG 3 cut(s) 260, 1141, 1813
BstV1I GCAGC 3 cut(s) 27, 909, 1009
BstX2I RGATCY 2 cut(s) 29, 313
BstXI CCANNNNNNTGG 2 cut(s) 413, 545
BstYI RGATCY 2 cut(s) 29, 313
BsuI GTATCC 2 cut(s) 594, 1313
BsuRI GGCC 2 cut(s) 230, 1096
BtgI CCRYGG 2 cut(s) 528, 1421
BtrI CACGTC 1 cut(s) 1090
BtsCI GGATG 4 cut(s) 524, 584, 960, 1781
BtsI GCAGTG 1 cut(s) 1899
BtsIMutI CAGTG 6 cut(s) 476, 826, 1216, 1815, 1899, 1952
Cac8I GCNNGC 2 cut(s) 704, 1143
CciI TCATGA 2 cut(s) 1203, 1330
CfoI GCGC 2 cut(s) 974, 1815
Cfr13I GGNCC 2 cut(s) 535, 608
CseI GACGC 2 cut(s) 647, 689
Csp6I GTAC 6 cut(s) 146, 1079, 1258, 1444, 1674, 1772
CviQI GTAC 6 cut(s) 146, 1079, 1258, 1444, 1674, 1772
DdeI CTNAG 7 cut(s) 21, 274, 1170, 1629, 1700, 1826, 1888
DpnI GATC 6 cut(s) 31, 81, 315, 418, 905, 1208
DpnII GATC 6 cut(s) 29, 79, 313, 416, 903, 1206
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
Eco130I CCWWGG 4 cut(s) 279, 528, 744, 1552
Eco24I GRGCYC 1 cut(s) 860
Eco31I GGTCTC 1 cut(s) 1385
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 535, 608
Eco57I CTGAAG 1 cut(s) 1839
Eco88I CYCGRG 3 cut(s) 782, 1074, 1775
EcoRII CCWGG 3 cut(s) 125, 859, 1260
EcoRV GATATC 1 cut(s) 295
EcoT14I CCWWGG 4 cut(s) 279, 528, 744, 1552
EcoT22I ATGCAT 1 cut(s) 1758
EcoT38I GRGCYC 1 cut(s) 860
ErhI CCWWGG 4 cut(s) 279, 528, 744, 1552
FalI AAGNNNNNCTT 2 cut(s) 1305, 1337
FaqI GGGAC 3 cut(s) 866, 1057, 1621
FauNDI CATATG 1 cut(s) 429
FbaI TGATCA 1 cut(s) 1206
FblI GTMKAC 1 cut(s) 1915
Fnu4HI GCNGC 5 cut(s) 41, 93, 258, 923, 998
FokI GGATG 4 cut(s) 511, 591, 967, 1768
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 5 cut(s) 41, 93, 258, 923, 998
FspAI RTGCGCAY 1 cut(s) 973
FspBI CTAG 4 cut(s) 153, 557, 1857, 1878
FspI TGCGCA 1 cut(s) 973
GlaI GCGC 2 cut(s) 973, 1814
GluI GCNGC 5 cut(s) 41, 93, 258, 923, 998
HaeIII GGCC 2 cut(s) 230, 1096
HapII CCGG 2 cut(s) 311, 1297
HgaI GACGC 2 cut(s) 647, 689
HhaI GCGC 2 cut(s) 974, 1815
Hin1I GRCGYC 2 cut(s) 639, 681
Hin6I GCGC 2 cut(s) 972, 1813
HinP1I GCGC 2 cut(s) 972, 1813
HpaII CCGG 2 cut(s) 311, 1297
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 2 cut(s) 1258, 1916
Hpy188I TCNGA 9 cut(s) 612, 646, 667, 1105, 1173, 1477, 1584, 1687, 1720
Hpy8I GTNNAC 2 cut(s) 1258, 1916
Hpy99I CGWCG 2 cut(s) 641, 683
HpyAV CCTTC 2 cut(s) 1510, 1919
HpyCH4III ACNGT 3 cut(s) 471, 493, 821
HpyCH4IV ACGT 2 cut(s) 1089, 1249
HpyCH4V TGCA 8 cut(s) 43, 367, 965, 1187, 1375, 1756, 1848, 1897
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 971, 1093
HpyF3I CTNAG 7 cut(s) 21, 274, 1170, 1629, 1700, 1826, 1888
HpySE526I ACGT 2 cut(s) 1089, 1249
Hsp92I GRCGYC 2 cut(s) 639, 681
HspAI GCGC 2 cut(s) 972, 1813
Ksp22I TGATCA 1 cut(s) 1206
Kzo9I GATC 6 cut(s) 29, 79, 313, 416, 903, 1206
Lsp1109I GCAGC 3 cut(s) 27, 909, 1009
LweI GCATC 3 cut(s) 562, 983, 1743
MaeI CTAG 4 cut(s) 153, 557, 1857, 1878
MaeII ACGT 2 cut(s) 1089, 1249
MaeIII GTNAC 2 cut(s) 1033, 1245
MalI GATC 6 cut(s) 31, 81, 315, 418, 905, 1208
MboI GATC 6 cut(s) 29, 79, 313, 416, 903, 1206
MboII GAAGA 9 cut(s) 761, 764, 785, 920, 1118, 1277, 1325, 1361, 1772
MflI RGATCY 2 cut(s) 29, 313
MhlI GDGCHC 3 cut(s) 860, 1147, 1909
MlyI GAGTC 5 cut(s) 704, 794, 920, 1709, 1786
Mph1103I ATGCAT 1 cut(s) 1758
MroXI GAANNNNTTC 2 cut(s) 1532, 1589
MseI TTAA 7 cut(s) 327, 479, 843, 1083, 1178, 1767, 1923
MslI CAYNNNNRTG 2 cut(s) 764, 1902
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 2 cut(s) 311, 1297
MspR9I CCNGG 3 cut(s) 127, 861, 1262
MvaI CCWGG 3 cut(s) 127, 861, 1262
MvnI CGCG 3 cut(s) 260, 1141, 1813
MwoI GCNNNNNNNGC 3 cut(s) 101, 971, 1093
NcoI CCATGG 1 cut(s) 528
NdeI CATATG 1 cut(s) 429
NdeII GATC 6 cut(s) 29, 79, 313, 416, 903, 1206
NlaIV GGNNCC 3 cut(s) 315, 375, 1799
NmuCI GTSAC 1 cut(s) 1245
NsbI TGCGCA 1 cut(s) 973
NsiI ATGCAT 1 cut(s) 1758
NspI RCATGY 3 cut(s) 47, 77, 1242
OliI CACNNNNGTG 1 cut(s) 764
PaeR7I CTCGAG 2 cut(s) 782, 1775
PagI TCATGA 2 cut(s) 1203, 1330
PasI CCCWGGG 1 cut(s) 860
PciI ACATGT 2 cut(s) 73, 1238
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PdmI GAANNNNTTC 2 cut(s) 1532, 1589
PfeI GAWTC 9 cut(s) 463, 485, 549, 755, 824, 1150, 1316, 1409, 1682
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 5 cut(s) 42, 94, 259, 924, 999
PleI GAGTC 5 cut(s) 703, 793, 919, 1709, 1786
PpsI GAGTC 5 cut(s) 703, 793, 919, 1709, 1786
Ppu21I YACGTR 1 cut(s) 1250
PscI ACATGT 2 cut(s) 73, 1238
PshAI GACNNNNGTC 1 cut(s) 1482
PshBI ATTAAT 2 cut(s) 1178, 1767
Psp6I CCWGG 3 cut(s) 125, 859, 1260
PspGI CCWGG 3 cut(s) 125, 859, 1260
PspN4I GGNNCC 3 cut(s) 315, 375, 1799
PspPI GGNCC 2 cut(s) 535, 608
PspXI VCTCGAGB 2 cut(s) 782, 1775
PsuI RGATCY 2 cut(s) 29, 313
PsyI GACNNNGTC 1 cut(s) 659
RsaI GTAC 6 cut(s) 147, 1080, 1259, 1445, 1675, 1773
RsaNI GTAC 6 cut(s) 146, 1079, 1258, 1444, 1674, 1772
RseI CAYNNNNRTG 2 cut(s) 764, 1902
SaqAI TTAA 7 cut(s) 327, 479, 843, 1083, 1178, 1767, 1923
SatI GCNGC 5 cut(s) 41, 93, 258, 923, 998
Sau3AI GATC 6 cut(s) 29, 79, 313, 416, 903, 1206
Sau96I GGNCC 2 cut(s) 535, 608
ScaI AGTACT 2 cut(s) 1080, 1675
SchI GAGTC 5 cut(s) 704, 794, 920, 1709, 1786
ScrFI CCNGG 3 cut(s) 127, 861, 1262
SduI GDGCHC 3 cut(s) 860, 1147, 1909
SfaNI GCATC 3 cut(s) 562, 983, 1743
SfcI CTRYAG 1 cut(s) 1563
Sfr274I CTCGAG 2 cut(s) 782, 1775
SinI GGWCC 2 cut(s) 535, 608
SlaI CTCGAG 2 cut(s) 782, 1775
SmiMI CAYNNNNRTG 2 cut(s) 764, 1902
SmlI CTYRAG 4 cut(s) 782, 806, 1082, 1775
SmoI CTYRAG 4 cut(s) 782, 806, 1082, 1775
SsiI CCGC 6 cut(s) 93, 258, 409, 769, 1139, 1811
SspMI CTAG 4 cut(s) 153, 557, 1857, 1878
StyD4I CCNGG 3 cut(s) 125, 859, 1260
StyI CCWWGG 4 cut(s) 279, 528, 744, 1552
TaaI ACNGT 3 cut(s) 471, 493, 821
TaiI ACGT 2 cut(s) 1092, 1252
TaqI TCGA 9 cut(s) 100, 212, 387, 783, 906, 918, 1503, 1593, 1776
TatI WGTACW 5 cut(s) 145, 1078, 1443, 1673, 1771
TauI GCSGC 2 cut(s) 95, 260
TfiI GAWTC 9 cut(s) 463, 485, 549, 755, 824, 1150, 1316, 1409, 1682
Tru1I TTAA 7 cut(s) 327, 479, 843, 1083, 1178, 1767, 1923
Tru9I TTAA 7 cut(s) 327, 479, 843, 1083, 1178, 1767, 1923
TscAI CASTG 6 cut(s) 476, 826, 1216, 1822, 1899, 1959
TseFI GTSAC 1 cut(s) 1245
TseI GCWGC 3 cut(s) 40, 922, 997
Tsp45I GTSAC 1 cut(s) 1245
TspGWI ACGGA 2 cut(s) 542, 676
TspRI CASTG 6 cut(s) 476, 826, 1216, 1822, 1899, 1959
Tth111I GACNNNGTC 1 cut(s) 659
Vha464I CTTAAG 1 cut(s) 1082
VpaK11BI GGWCC 2 cut(s) 535, 608
VspI ATTAAT 2 cut(s) 1178, 1767
XapI RAATTY 8 cut(s) 134, 162, 731, 839, 898, 1055, 1325, 1569
XceI RCATGY 3 cut(s) 47, 77, 1242
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XhoI CTCGAG 2 cut(s) 782, 1775
XmiI GTMKAC 1 cut(s) 1915
XmnI GAANNNNTTC 2 cut(s) 1532, 1589
XspI CTAG 4 cut(s) 153, 557, 1857, 1878
ZrmI AGTACT 2 cut(s) 1080, 1675
Zsp2I ATGCAT 1 cut(s) 1758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.