Rmu_sc0001921.1_g000027

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001921.1
OG0000129
Physical Location & Seq
Forward (+)
150703 .. 151836
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001921.1_g000027.1.cds

Sequence Viewer

Length: 1038 bp
atgaacaattggaaacactgtgatcgtacttggtttggtcgagggagtagaatcatcataacatccagagatgaacacttgatcagcgcatttggagcagataaagtatacaaggtgaatgcattaactgatcctgaagctttggagctctttagtttgaaagccttcaaggaagacgaggttggagaagattttctcaagctatccaaggaatttttgaaatatgctaatggcgttccattagctattaaagttttgggatcgtccgttcgtggtagaagtgtaaagttatggtcaagtgcattgaatagacttaaaaaaaatcctccgaaagggattattgatgttcttaaagtcagttttgatggattagaagaaacagaaaagaaaacgtttctggacatcgcgtgtttctttaaaggagagaacaaggatcgtgtaataagaatactaaatggttgtagcgatgacggtgtggacatggatgtagaagttcttatggacaaatctttggtaactctatttggaacaaaattgtggatgcatgatttgatacaagaaatgggtagggaagttgttcgtcaagaatgtcctaataatcctggaggacgtagcagattgtggattccaaatgagattatccatgtacttgatcagagtaaggcgacgagtgcagttcaaagcctattcctccaatgtccaacaaaagacgatgttgttcactcaattgataatgccttctcaaatatgaacagactgagattgctcaagattggtagtgcggagttttccgatctttataatgagttacagttgcatgaaggtcctttgtgttatttgccatggtcatatacggacagagtgagattgctcaagattggtagtctgaagttttccggaaacatcagatacatttctaatgagttacagtatcttgaatggcttgcatgtcctttggattctttcccatcagactttcaaccagataaactcattgaactacgcatgtattgtagccgcatcgaacaactatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

345

Amino Acids

39.56

Weight (kDa)

6.35

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 407
AccIII TCCGGA 1 cut(s) 896
AciI CCGC 2 cut(s) 782, 1018
AclI AACGTT 1 cut(s) 392
AclWI GGATC 3 cut(s) 125, 268, 441
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 2 cut(s) 156, 908
AfaI GTAC 2 cut(s) 28, 648
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 8 cut(s) 160, 169, 220, 307, 680, 938, 980, 998
AjnI CCWGG 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AloI GAACNNNNNNTCC 2 cut(s) 252, 284
AluBI AGCT 4 cut(s) 140, 148, 202, 245
AluI AGCT 4 cut(s) 140, 148, 202, 245
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 3 cut(s) 125, 268, 441
Aor13HI TCCGGA 1 cut(s) 896
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 3 cut(s) 164, 192, 576
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 824
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 824
BanII GRGCYC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 359, 976
BciT130I CCWGG 1 cut(s) 603
BclI TGATCA 2 cut(s) 81, 652
BisI GCNGC 1 cut(s) 1018
BlsI GCNGC 1 cut(s) 1019
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 824
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 2 cut(s) 531, 1029
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 3 cut(s) 182, 752, 857
BsaJI CCNNGG 2 cut(s) 207, 842
BsaWI WCCGGW 1 cut(s) 896
Bsc4I CCNNNNNNNGG 1 cut(s) 332
BseAI TCCGGA 1 cut(s) 896
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 207, 842
BseGI GGATG 3 cut(s) 62, 490, 546
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 749
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 897
BslI CCNNNNNNNGG 1 cut(s) 332
BsmI GAATGC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 896
Bsp143I GATC 7 cut(s) 22, 81, 130, 260, 433, 652, 793
Bsp19I CCATGG 1 cut(s) 842
BspACI CCGC 2 cut(s) 782, 1018
BspCNI CTCAG 1 cut(s) 750
BspEI TCCGGA 1 cut(s) 896
BspFNI CGCG 1 cut(s) 407
BspPI GGATC 3 cut(s) 125, 268, 441
BssECI CCNNGG 2 cut(s) 207, 842
BssMI GATC 7 cut(s) 22, 81, 130, 260, 433, 652, 793
BssNAI GTATAC 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 207, 842
Bst1107I GTATAC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 4 cut(s) 20, 473, 813, 930
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 1 cut(s) 758
BstDSI CCRYGG 1 cut(s) 842
BstENI CCTNNNNNAGG 1 cut(s) 330
BstF5I GGATG 3 cut(s) 62, 490, 546
BstFNI CGCG 1 cut(s) 407
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 7 cut(s) 25, 84, 133, 263, 436, 655, 796
BstMBI GATC 7 cut(s) 22, 81, 130, 260, 433, 652, 793
BstMWI GCNNNNNNNGC 2 cut(s) 95, 671
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 2 cut(s) 951, 1009
BstSCI CCNGG 1 cut(s) 601
BstUI CGCG 1 cut(s) 407
BstV2I GAAGAC 1 cut(s) 180
BstZ17I GTATAC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 842
BtgZI GCGATG 2 cut(s) 388, 480
BtsCI GGATG 3 cut(s) 62, 490, 546
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 945
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 824
Csp6I GTAC 2 cut(s) 27, 647
CviAII CATG 7 cut(s) 481, 545, 644, 818, 843, 948, 1006
CviJI RGCY 8 cut(s) 140, 148, 164, 202, 245, 684, 943, 1017
CviKI_1 RGCY 8 cut(s) 140, 148, 164, 202, 245, 684, 943, 1017
CviQI GTAC 2 cut(s) 27, 647
DdeI CTNAG 1 cut(s) 758
DpnI GATC 7 cut(s) 24, 83, 132, 262, 435, 654, 795
DpnII GATC 7 cut(s) 22, 81, 130, 260, 433, 652, 793
DraI TTTAAA 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 207, 842
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 156, 908
EcoICRI GAGCTC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 2 cut(s) 207, 842
EcoT22I ATGCAT 2 cut(s) 124, 546
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 2 cut(s) 207, 842
FaeI CATG 7 cut(s) 484, 548, 647, 821, 846, 951, 1009
FatI CATG 7 cut(s) 480, 544, 643, 817, 842, 947, 1005
FbaI TGATCA 2 cut(s) 81, 652
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 1018
FokI GGATG 3 cut(s) 49, 497, 553
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 1018
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 1018
GsuI CTGGAG 1 cut(s) 624
HapII CCGG 1 cut(s) 897
HhaI GCGC 1 cut(s) 89
Hin1II CATG 7 cut(s) 484, 548, 647, 821, 846, 951, 1009
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 3 cut(s) 51, 625, 959
HpaII CCGG 1 cut(s) 897
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 3 cut(s) 109, 478, 721
Hpy188I TCNGA 6 cut(s) 330, 657, 793, 888, 908, 973
Hpy188III TCNNGA 8 cut(s) 66, 134, 398, 584, 769, 874, 897, 935
Hpy8I GTNNAC 3 cut(s) 109, 478, 721
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 3 cut(s) 175, 748, 815
HpyCH4III ACNGT 4 cut(s) 20, 473, 813, 930
HpyCH4IV ACGT 2 cut(s) 392, 610
HpyCH4V TGCA 6 cut(s) 122, 302, 544, 674, 817, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 671
HpyF3I CTNAG 1 cut(s) 758
HpySE526I ACGT 2 cut(s) 392, 610
Hsp92II CATG 7 cut(s) 484, 548, 647, 821, 846, 951, 1009
HspAI GCGC 1 cut(s) 87
Kpn2I TCCGGA 1 cut(s) 896
Ksp22I TGATCA 2 cut(s) 81, 652
Kzo9I GATC 7 cut(s) 22, 81, 130, 260, 433, 652, 793
LmnI GCTCC 2 cut(s) 95, 145
LpnPI CCDG 7 cut(s) 79, 147, 383, 588, 615, 910, 996
LweI GCATC 2 cut(s) 531, 1029
MaeII ACGT 2 cut(s) 392, 610
MaeIII GTNAC 3 cut(s) 514, 807, 924
MalI GATC 7 cut(s) 24, 83, 132, 262, 435, 654, 795
MboI GATC 7 cut(s) 22, 81, 130, 260, 433, 652, 793
MboII GAAGA 3 cut(s) 185, 200, 386
MfeI CAATTG 2 cut(s) 7, 726
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 4 cut(s) 7, 212, 533, 726
MmeI TCCRAC 2 cut(s) 163, 725
MnlI CCTC 5 cut(s) 35, 172, 336, 599, 701
Mph1103I ATGCAT 2 cut(s) 124, 546
MroI TCCGGA 1 cut(s) 896
MroXI GAANNNNTTC 3 cut(s) 164, 192, 576
MseI TTAA 5 cut(s) 125, 249, 315, 351, 417
MspI CCGG 1 cut(s) 897
MspR9I CCNGG 1 cut(s) 603
MunI CAATTG 2 cut(s) 7, 726
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 95, 671
NcoI CCATGG 1 cut(s) 842
NdeII GATC 7 cut(s) 22, 81, 130, 260, 433, 652, 793
NlaIII CATG 7 cut(s) 484, 548, 647, 821, 846, 951, 1009
NsiI ATGCAT 2 cut(s) 124, 546
NspI RCATGY 2 cut(s) 951, 1009
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 3 cut(s) 164, 192, 576
PfeI GAWTC 3 cut(s) 51, 625, 959
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 1 cut(s) 1019
PpuMI RGGWCCY 1 cut(s) 824
PsiI TTATAA 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspPI GGNCC 1 cut(s) 824
PspPPI RGGWCCY 1 cut(s) 824
RsaI GTAC 2 cut(s) 28, 648
RsaNI GTAC 2 cut(s) 27, 647
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 5 cut(s) 125, 249, 315, 351, 417
SatI GCNGC 1 cut(s) 1018
Sau3AI GATC 7 cut(s) 22, 81, 130, 260, 433, 652, 793
Sau96I GGNCC 1 cut(s) 824
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 1 cut(s) 150
SetI ASST 9 cut(s) 117, 142, 150, 183, 204, 247, 395, 613, 826
SfaNI GCATC 2 cut(s) 531, 1029
SinI GGWCC 1 cut(s) 824
SmlI CTYRAG 3 cut(s) 197, 767, 872
SmoI CTYRAG 3 cut(s) 197, 767, 872
Sse9I AATT 4 cut(s) 7, 212, 533, 726
SsiI CCGC 2 cut(s) 782, 1018
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 2 cut(s) 207, 842
TaaI ACNGT 4 cut(s) 20, 473, 813, 930
TaiI ACGT 2 cut(s) 395, 613
TaqI TCGA 2 cut(s) 40, 1023
TasI AATT 4 cut(s) 7, 212, 533, 726
TatI WGTACW 1 cut(s) 646
TauI GCSGC 1 cut(s) 1020
TfiI GAWTC 3 cut(s) 51, 625, 959
Tru1I TTAA 5 cut(s) 125, 249, 315, 351, 417
Tru9I TTAA 5 cut(s) 125, 249, 315, 351, 417
TscAI CASTG 1 cut(s) 23
TspDTI ATGAA 4 cut(s) 17, 87, 764, 834
TspGWI ACGGA 2 cut(s) 256, 869
TspRI CASTG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 824
XagI CCTNNNNNAGG 1 cut(s) 330
XapI RAATTY 1 cut(s) 212
XceI RCATGY 2 cut(s) 951, 1009
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 3 cut(s) 164, 192, 576
Zsp2I ATGCAT 2 cut(s) 124, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.