Rmu_sc0005071.1_g000013

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005071.1
OG0000129
Physical Location & Seq
Reverse (-)
61145 .. 61720
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005071.1_g000013.1.cds

Sequence Viewer

Length: 360 bp
atgaacatttcctttagaaccacttgccctggtgtagaggttcaaagaagtggggtccgtgttgtgtaccatgaagatttccaagagtttgttgagacaatcatccagtgcatgcaaagagaagatactcttgaactttatgataagttggactggtctgctccttctcctcattttggttgtgtgttctatggagctgaaattcccaggtggaaatggttcatgcattttaaccaaggaaactctgcagaaatcaaattgcctccaaatgtgtttgatgatgccaattggttggggattgctgtgtacgcgttgtgttggcagtcacatgaagatccaaacatcattggtgacacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

119

Amino Acids

13.85

Weight (kDa)

4.65

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 311
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 2 cut(s) 68, 308
AfiI CCNNNNNNNGG 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 2 cut(s) 44, 134
AjnI CCWGG 2 cut(s) 28, 206
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 30, 208
BcoDI GTCTC 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 246
Bme1390I CCNGG 2 cut(s) 30, 208
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 30, 208
BmsI GCATC 1 cut(s) 271
BsaJI CCNNGG 3 cut(s) 28, 206, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 106, 158
BseBI CCWGG 2 cut(s) 30, 208
BseDI CCNNGG 3 cut(s) 28, 206, 235
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 106, 158
BseRI GAGGAG 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 334
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 1 cut(s) 329
BsrI ACTGG 2 cut(s) 106, 158
BssECI CCNNGG 3 cut(s) 28, 206, 235
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 2 cut(s) 30, 208
BstC8I GCNNGC 1 cut(s) 113
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 2 cut(s) 30, 208
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 28, 206
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 1 cut(s) 334
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 67, 307
CviAII CATG 4 cut(s) 71, 112, 223, 329
CviJI RGCY 1 cut(s) 197
CviKI_1 RGCY 1 cut(s) 197
CviQI GTAC 2 cut(s) 67, 307
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 28, 206
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 74, 115, 226, 332
FaiI YATR 6 cut(s) 72, 113, 141, 192, 224, 330
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 4 cut(s) 70, 111, 222, 328
FokI GGATG 1 cut(s) 89
Hin1II CATG 4 cut(s) 74, 115, 226, 332
Hpy166II GTNNAC 2 cut(s) 67, 307
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 67, 307
HpyAV CCTTC 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 111, 115, 226, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
Hsp92II CATG 4 cut(s) 74, 115, 226, 332
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 2 cut(s) 166, 194
LpnPI CCDG 6 cut(s) 15, 42, 119, 139, 193, 220
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 324, 350
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 3 cut(s) 86, 134, 344
MfeI CAATTG 1 cut(s) 286
MflI RGATCY 1 cut(s) 334
MluCI AATT 3 cut(s) 201, 257, 286
MluI ACGCGT 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 3 cut(s) 31, 180, 273
Mph1103I ATGCAT 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 30, 208
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 2 cut(s) 30, 208
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 1 cut(s) 334
NlaIII CATG 4 cut(s) 74, 115, 226, 332
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 324, 350
NsiI ATGCAT 1 cut(s) 228
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 28, 206
PspGI CCWGG 2 cut(s) 28, 206
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 2 cut(s) 68, 308
RsaNI GTAC 2 cut(s) 67, 307
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 30, 208
SetI ASST 3 cut(s) 42, 199, 212
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 55
SphI GCATGC 1 cut(s) 115
Sse9I AATT 3 cut(s) 201, 257, 286
StyD4I CCNGG 2 cut(s) 28, 206
StyI CCWWGG 1 cut(s) 235
TasI AATT 3 cut(s) 201, 257, 286
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 113
TseFI GTSAC 2 cut(s) 324, 350
Tsp45I GTSAC 2 cut(s) 324, 350
TspDTI ATGAA 4 cut(s) 17, 87, 211, 345
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.