Rh7CG510400

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000129
Physical Location & Seq
Forward (+)
68951271 .. 68951621
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG510400.1

Sequence Viewer

Length: 351 bp
ATGCCTCAAAATCTGACCGATGATAACAAGTGGAAGGGACTTGCCGCGTGTGCTATATTCTCAGTCAAGGGGCATACTGCTCTCTCTGTTATTGAACCGGATCCTGAATTTTCTAATTACTCGTATCAAATGACATTGGAAACCGATGCTGGGCGTCTGAAACCATATGTGTTGGACAGGAAAGACCTTCTTCCCCCTCTTGGATCAAGTTCTCATCTGCTTATGATTTTCTATATATCTAGTTCAAAGAAGTACTATCCACAATGGGAATTAGACATTTCAACTGCGGTGAGTGCTACGTTTGAAACCACCAATTCATCATGGTGGTCCAGAAATGTGGAATTGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

116

Amino Acids

13.15

Weight (kDa)

5.23

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 47
AciI CCGC 2 cut(s) 45, 287
AclWI GGATC 3 cut(s) 95, 108, 211
AcsI RAATTY 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 154
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 150, 200
AgsI TTSAA 4 cut(s) 95, 246, 282, 305
AlwI GGATC 3 cut(s) 95, 108, 211
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 327
BamHI GGATCC 1 cut(s) 100
BfaI CTAG 2 cut(s) 240, 349
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 200
BseLI CCNNNNNNNGG 2 cut(s) 150, 200
BseMII CTCAG 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 150, 200
BsmFI GGGAC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 100, 203
BspACI CCGC 2 cut(s) 45, 287
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 3 cut(s) 95, 108, 211
BssMI GATC 2 cut(s) 100, 203
BssNI GRCGYC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 47
BstKTI GATC 2 cut(s) 103, 206
BstMBI GATC 2 cut(s) 100, 203
BstMWI GCNNNNNNNGC 2 cut(s) 50, 293
BstUI CGCG 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 327
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 321
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 61
DpnI GATC 2 cut(s) 102, 205
DpnII GATC 2 cut(s) 100, 203
Eco47I GGWCC 1 cut(s) 327
FaeI CATG 1 cut(s) 324
FaiI YATR 8 cut(s) 56, 75, 166, 168, 224, 234, 236, 322
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 51
FatI CATG 1 cut(s) 320
FauNDI CATATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 240, 349
GluI GCNGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 153
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 1 cut(s) 324
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 15, 159
Hpy188III TCNNGA 2 cut(s) 104, 330
HpyAV CCTTC 2 cut(s) 28, 197
HpyCH4IV ACGT 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 293
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 299
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 1 cut(s) 324
Kzo9I GATC 2 cut(s) 100, 203
LpnPI CCDG 5 cut(s) 111, 117, 135, 163, 343
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 240, 349
MaeII ACGT 1 cut(s) 299
MalI GATC 2 cut(s) 102, 205
MboI GATC 2 cut(s) 100, 203
MboII GAAGA 1 cut(s) 182
MflI RGATCY 1 cut(s) 100
MluCI AATT 5 cut(s) 107, 115, 269, 313, 341
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 2 cut(s) 15, 207
MslI CAYNNNNRTG 1 cut(s) 322
MspI CCGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 50, 293
NdeI CATATG 1 cut(s) 166
NdeII GATC 2 cut(s) 100, 203
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 322
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 100, 203
Sau96I GGNCC 1 cut(s) 327
ScaI AGTACT 1 cut(s) 254
SetI ASST 2 cut(s) 189, 302
SfaNI GCATC 1 cut(s) 136
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 322
Sse9I AATT 5 cut(s) 107, 115, 269, 313, 341
SsiI CCGC 2 cut(s) 45, 287
SspMI CTAG 2 cut(s) 240, 349
TaiI ACGT 1 cut(s) 302
TaqII GACCGA 1 cut(s) 32
TasI AATT 5 cut(s) 107, 115, 269, 313, 341
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 327
XapI RAATTY 1 cut(s) 107
XspI CTAG 2 cut(s) 240, 349
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.