Rmu_sc0001921.1_g000028

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001921.1
Physical Location & Seq
Forward (+)
152153 .. 152785
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001921.1_g000028.1.cds

Sequence Viewer

Length: 633 bp
atgttacggcttattgatctgagtggttcacaatacttgatgtcgactccagacttcactgaggttcctgatctggaaacgttggtgcttcaagtttgtacaagcttggtggaggttcacccgtctcttggatttctgaagaaacttgttaatttgaatatggcaaaatgcaagtccattgagagccttccacctttcactaccttggaatcccttcaaatattgaggctttcactctgctcaggattgaagaagtttccagaaattgaaggaaatatgaaaagcttgctggagcttcatttggaatggaccagcattgaggaattgcctccatcaattgaacacttcattggtctaaccatgttgaatctaacaggttgtaaaaaccttttgcatcttcccaataccattgggtgcttgacatctttgaaatgtctcgatctaacaggttgctccaaaattgatgagattcccgagaatctgaatggtatgaaatgtctggagattcttgcaattaatgaaacttccgtaagggagttatctttcattgtaggcatgaagaatctacagtatctatactgccgaggatgtaaggctgtatttgggggggtttttttgctcccccgcttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

210

Amino Acids

23.39

Weight (kDa)

5.61

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 631
AccI GTMKAC 1 cut(s) 44
AciI CCGC 1 cut(s) 625
AclI AACGTT 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 8 cut(s) 92, 157, 218, 250, 269, 341, 367, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 105, 285, 295
AluI AGCT 3 cut(s) 105, 285, 295
Alw26I GTCTC 2 cut(s) 129, 440
Ama87I CYCGRG 1 cut(s) 473
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 516
Asp700I GAANNNNTTC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 1 cut(s) 309
BccI CCATC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 129, 440
BfmI CTRYAG 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 66
BmsI GCATC 1 cut(s) 403
BpmI CTGGAG 3 cut(s) 33, 311, 521
Bpu10I CCTNAGC 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 204, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 204, 583
BseGI GGATG 1 cut(s) 593
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 3 cut(s) 11, 51, 255
BsiHKCI CYCGRG 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 2 cut(s) 129, 440
BsmBI CGTCTC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 473
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 3 cut(s) 16, 70, 439
BspACI CCGC 1 cut(s) 625
BspCNI CTCAG 3 cut(s) 12, 52, 254
BspLI GGNNCC 1 cut(s) 66
BsrGI TGTACA 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 204, 583
BssMI GATC 3 cut(s) 16, 70, 439
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 570
BstAUI TGTACA 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 3 cut(s) 20, 60, 241
BstF5I GGATG 1 cut(s) 593
BstKTI GATC 3 cut(s) 19, 73, 442
BstMAI GTCTC 2 cut(s) 129, 440
BstMBI GATC 3 cut(s) 16, 70, 439
BstSFI CTRYAG 1 cut(s) 566
BtsCI GGATG 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 309
Csp6I GTAC 1 cut(s) 99
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 2 cut(s) 361, 556
CviJI RGCY 7 cut(s) 10, 105, 186, 229, 285, 295, 596
CviKI_1 RGCY 7 cut(s) 10, 105, 186, 229, 285, 295, 596
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 3 cut(s) 20, 60, 241
DpnI GATC 3 cut(s) 18, 72, 441
DpnII GATC 3 cut(s) 16, 70, 439
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 473
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 2 cut(s) 364, 559
FaiI YATR 7 cut(s) 161, 278, 362, 491, 557, 577, 631
FatI CATG 2 cut(s) 360, 555
FblI GTMKAC 1 cut(s) 44
FokI GGATG 1 cut(s) 600
GsuI CTGGAG 3 cut(s) 33, 311, 521
Hin1II CATG 2 cut(s) 364, 559
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 2 cut(s) 103, 283
HinfI GANTC 7 cut(s) 46, 209, 367, 469, 478, 505, 562
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 3 cut(s) 29, 45, 118
Hpy188I TCNGA 3 cut(s) 21, 138, 483
Hpy188III TCNNGA 8 cut(s) 50, 68, 74, 243, 260, 437, 473, 500
Hpy8I GTNNAC 3 cut(s) 29, 45, 118
HpyAV CCTTC 3 cut(s) 197, 224, 263
HpyCH4III ACNGT 1 cut(s) 570
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 171, 394, 512
HpyF3I CTNAG 3 cut(s) 20, 60, 241
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 2 cut(s) 364, 559
Kzo9I GATC 3 cut(s) 16, 70, 439
LmnI GCTCC 3 cut(s) 292, 458, 624
LweI GCATC 1 cut(s) 403
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 18, 72, 441
MboI GATC 3 cut(s) 16, 70, 439
MboII GAAGA 4 cut(s) 151, 262, 389, 571
MfeI CAATTG 1 cut(s) 336
MluCI AATT 6 cut(s) 151, 264, 323, 336, 459, 513
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 6 cut(s) 55, 106, 219, 313, 339, 578
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 2 cut(s) 150, 516
MunI CAATTG 1 cut(s) 336
NdeII GATC 3 cut(s) 16, 70, 439
NlaIII CATG 2 cut(s) 364, 559
NlaIV GGNNCC 1 cut(s) 66
NmeAIII GCCGAG 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 6 cut(s) 209, 367, 469, 478, 505, 562
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 516
PsiI TTATAA 1 cut(s) 631
Psp1406I AACGTT 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 309
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SalI GTCGAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 150, 516
Sau3AI GATC 3 cut(s) 16, 70, 439
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 1 cut(s) 40
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 566
SinI GGWCC 1 cut(s) 309
Sse9I AATT 6 cut(s) 151, 264, 323, 336, 459, 513
SsiI CCGC 1 cut(s) 625
SspI AATATT 1 cut(s) 222
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 570
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 44, 438
TasI AATT 6 cut(s) 151, 264, 323, 336, 459, 513
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 6 cut(s) 209, 367, 469, 478, 505, 562
Tru1I TTAA 2 cut(s) 150, 516
Tru9I TTAA 2 cut(s) 150, 516
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 7 cut(s) 287, 293, 337, 506, 534, 535, 572
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 309
VspI ATTAAT 1 cut(s) 516
XmiI GTMKAC 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.