Rw7G041420

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000129
Physical Location & Seq
Forward (+)
64642649 .. 64645930
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041420.1

Sequence Viewer

Length: 2886 bp
ATGTCGACTCCAGACTTCACTGAGGTTCCTGATCTTGAAACGTTGGTGCTTCAAAATTGTACAAGCTTGGTGGAGGTTCACCCATCTCTTGGATTTCTGAAGAAACTTGTCTCTTTGAATATGACATATTGCGAGTCTATTGAGAGCATTCCACCTTTCACTGCCCTGGAATCCCTTCAAATATTGAGGCTTTCATTCTGTTCAGGACTGAAGAAGTTTCCAGAAATTGAAGGAAATATGAAAAGCTTGCTGGAGCTTCATTTGGATGGGACCAGCATTGAGGAATTGCCTCCATCAATTGAACGCTTGACTGGTCTTACCATGTTGAATCTAGCAGACTGTAAAAACCTTTTGCATCTTCCCAATACCATTGGGTGCTTGACATCTTTGAAAAGTCTCGATCTAACAGGTTGCTCCAAAATTGATGAGATACCTGAGAATCTGAATGGTATAAAATGTCTGGAGATGCTTTGCATTGGTGGAACTTCCATAAGGGAGTTATCTTTCATTGTAGGCATGAAGAATCTACAGTATCTATCCTGCCGAGGATGTGAAAGTCTAGTGTCAAAATCATGCAAGGGTCTGGCTTCGTTATCGAGTTTGATAGGGCTAGACTTGAGTTATTGCAATCTGATGGATGGAGCAATTCTCAATGATTTTAGCAGCCTAATCTCCTTGGAATTGTTAGATTTAAGTGGTAATTGCTTTGTGCGATTACCTGAAAGTATCTCTCAACTCTCAAAACTCGAGACTCTGCGCTTGACTAATTGCAAACAGCTGCAATTGCTGCCCAAGAAGCTTCCGTTAAGTCTTCGAAACGTGAATGCACAAGATTGTACTTCACTGACGGATTACCCAAATCAAATCAAAGTATTGAATTCATGGGAGTCGGGAGTTACTACTGTTAATTCCCTCAATTCTTCAGCAGTTAAAGTCTCACAAAGTTTTTCAAGTACTGGGGGTGGGGGGGAACTTGTACAAGTGTGTATGACATATAATCATACTGAGGGGAAACAAGTTGATCATTTGCCAGTGACAGCTGAACCGATTCTAAAACAATTGCAGACGTCTTCCAGGTCAACTTACATGACCGTAGATGCTGGAGATGAAATTCCAGAGTGGTTCAACACTATATCTACCAGGAATCCCATATCAATCTCGATACCTCAAAATCTGACCGATGATAACGAGTGGAACGGATTTGCCGCGTGTGCTATATTCTCAGTCAAGGGGCATACTGCTCTCTCCCTTATTGAACCGGATCCTGATTTTTCTAATTACTCGTATCAAATCACATTGGAAACTGATGTTGTGCGTCTGGAACCATTTGTGTTGGGAGTGGAGTCAGTGGACTTTGGCAGCTTTGGATTAAGTTCTCATCTGCTTGTGATTTTCGGTATATCTAGGTTGGATATTCCACAGAGGGGGTTAAATCAATCAACTGTGGTGAGAGCTATATTTGAAACCACTAATCCATCCATGGTGGTCCAGAAATGTGGAATCCGTGTACTCTATGAGCAAGATGCTGGTTGGTTTTACAACATAAACTACCCTCCTTTGATTTGTCTGAATGATGTTCAGGACGCGGCCACTGTATTGGATTCTGCGTGTCGGAATCATGCTGTGGACGCCGCCTCTGTACGGGAGTCTGGCTGGCTTAGTCAATATATGGAATGGGAGAAATTCATTCCACCCTTGGAAGAAGAATACACACTTGAGCTGAGAAAGAACCTTGAGTCTGTTCTTCCGAGATTCCTTGAGGCACTAAACAGTTATCATGTAACGTTCGAATTTAACCTCAGAGGAAGCCCAGCGTGGTTTCCGGAATTTGTCCTTGATACGGGGTCAAATTCGAACATAGGGCCAATCAAGCTGCCTCAAAATCTACACAAGAGCAAGAAGTGGATGGGATTTGCAATATACGCATCACTGGAAGTGGGGCAGACAATGAAAGAGGACAACTATTGGGTATTTGTTACACTATTTGGTACGAATGTGGCCCAAAAACTTAAGCACGTCAGGCCATTGTCAGAAAAACATCATCAACTATTTGTTACTTACATACCGCGGGCACAGATGTCCGAAGTGTTGTTCACTCAGACATTAGAAACTGCAATGTCCATTGTGGTCGATAGCCCTCATGTAAAGGTTCAAAGATATGGGTTCCGCATTGTGTACCAAGAAGATATACAAGGGTTTGCTGATACTATTATCCGGTGCATGCAGAGGGCAGATTCTCTTGAATCTCACGATAAGTTGGTGGTAGAAGACTGGATAAAGTTGATACGATTGCAAGGTGCCCATTTAGAGAGAATGACAGAACGGGATTCCCGAACCCCACGGGAAAAATACTTTGAATTGCACTCACAAAAATATAGAAATCGGGACTGGTCTGACCCTCGTCGTGCTTCTTGTATCTTCAAGGGAGTTGAAATCTCCAAGTTGAAATGGTTCGTGCCTTTTATCAACCAAGGCAACTCGGCAGAAATCCAACTGCCTCTGAATGTGTTCGATGATGATAATTGGTTGGGGTTTGCCGGATGTTTTCAGTTGTTCCACGACCAATGTCTCGGCAGTACTGCTCCTGATTCAGAGAATGTTATGCTTATTTACCGTCTGGCCTCTGATATTGATTGGCAGCGCGTATTTGATTCCTACGAGCAGGTAAGTTTAAAGATTCGAAACCCATCGGCATTCGAAATGACTTTGTTCTTTTATACACCGCGCACTAGTCTTAGAAAGGTTTGGAGGCAATGCAAATTGGCAAGGATAACTATGTGGTTGTCTAGACCATGCTTCGCGGTGCATAGTTGTGCCCTTCGTCTACTATATAAGGAGGACGTTGAACATCTTGCAGAAACACTGACCCTCGCCGAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

961

Amino Acids

108.55

Weight (kDa)

5.38

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 26 - 136 1.4e-08 Leucine-rich repeat region
LRR_13 PF23286 56 - 143 4.8e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 203 - 296 2.9e-06 Leucine-rich repeat region
C-JID PF20160 368 - 509 3.3e-09 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1070
Acc36I ACCTGC 1 cut(s) 2653
AccB1I GGYRCC 1 cut(s) 2297
AccB7I CCANNNNNTGG 1 cut(s) 89
AccI GTMKAC 2 cut(s) 5, 2824
AccII CGCG 6 cut(s) 1208, 1586, 2068, 2643, 2725, 2801
AccIII TCCGGA 1 cut(s) 1822
AciI CCGC 8 cut(s) 1206, 1586, 1632, 2066, 2068, 2167, 2723, 2801
AclI AACGTT 2 cut(s) 41, 1784
AclWI GGATC 2 cut(s) 1256, 1269
AcoI YGGCCR 1 cut(s) 1587
AcsI RAATTY 6 cut(s) 877, 1110, 1682, 1790, 1826, 1849
AcuI CTGAAG 3 cut(s) 119, 230, 906
AcyI GRCGYC 2 cut(s) 1067, 1629
AfaI GTAC 9 cut(s) 61, 838, 955, 978, 1509, 1641, 1990, 2177, 2578
AfiI CCNNNNNNNGG 4 cut(s) 89, 1424, 1641, 1840
AflII CTTAAG 1 cut(s) 2009
AhlI ACTAGT 1 cut(s) 2729
AjiI CACGTC 1 cut(s) 2017
AjnI CCWGG 3 cut(s) 165, 1073, 1139
Alw26I GTCTC 5 cut(s) 115, 401, 743, 940, 2573
AlwI GGATC 2 cut(s) 1256, 1269
Ama87I CYCGRG 1 cut(s) 746
Aor13HI TCCGGA 1 cut(s) 1822
AoxI GGCC 5 cut(s) 1587, 1862, 1998, 2021, 2619
ApeKI GCWGC 6 cut(s) 663, 778, 787, 1359, 1873, 2638
ApoI RAATTY 6 cut(s) 877, 1110, 1682, 1790, 1826, 1849
Asp700I GAANNNNTTC 4 cut(s) 174, 1047, 2450, 2507
AspLEI GCGC 3 cut(s) 759, 2643, 2727
AspS9I GGNCC 4 cut(s) 270, 1486, 1862, 1999
AsuHPI GGTGA 2 cut(s) 71, 1459
AsuII TTCGAA 5 cut(s) 814, 1788, 1853, 2680, 2697
AvaI CYCGRG 1 cut(s) 746
AvaII GGWCC 2 cut(s) 270, 1486
BaeGI GKGCMC 3 cut(s) 2074, 2302, 2818
BaeI ACNNNNGTAYC 2 cut(s) 1980, 2013
BamHI GGATCC 1 cut(s) 1261
BanI GGYRCC 1 cut(s) 2297
BbsI GAAGAC 3 cut(s) 803, 1062, 2274
BbvI GCAGC 6 cut(s) 675, 765, 774, 1371, 1860, 2650
BccI CCATC 8 cut(s) 91, 260, 301, 628, 632, 1483, 1900, 2695
BciT130I CCWGG 3 cut(s) 167, 1075, 1141
BclI TGATCA 1 cut(s) 1021
BcoDI GTCTC 5 cut(s) 115, 401, 743, 940, 2573
BcuI ACTAGT 1 cut(s) 2729
BfaI CTAG 6 cut(s) 332, 560, 611, 1404, 2730, 2787
BfmI CTRYAG 1 cut(s) 527
BfrI CTTAAG 1 cut(s) 2009
BfuAI ACCTGC 1 cut(s) 2653
BisI GCNGC 9 cut(s) 664, 779, 788, 1206, 1360, 1587, 1632, 1874, 2639
BlsI GCNGC 9 cut(s) 665, 780, 789, 1207, 1361, 1588, 1633, 1875, 2640
BmcAI AGTACT 2 cut(s) 955, 2578
Bme1390I CCNGG 3 cut(s) 167, 1075, 1141
Bme18I GGWCC 2 cut(s) 270, 1486
BmeT110I CYCGRG 1 cut(s) 746
BmgBI CACGTC 1 cut(s) 2017
BmgT120I GGNCC 4 cut(s) 270, 1486, 1862, 1999
BmiI GGNNCC 6 cut(s) 27, 271, 1263, 1323, 2165, 2299
BmrFI CCNGG 3 cut(s) 167, 1075, 1141
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 5 cut(s) 364, 456, 1087, 1513, 1934
BmuI ACTGGG 1 cut(s) 966
BoxI GACNNNNGTC 2 cut(s) 2400, 2565
BpiI GAAGAC 3 cut(s) 803, 1062, 2274
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpmI CTGGAG 3 cut(s) 272, 482, 1122
Bpu14I TTCGAA 5 cut(s) 814, 1788, 1853, 2680, 2697
BpuEI CTTGAG 4 cut(s) 637, 1736, 1754, 1778
BsaHI GRCGYC 2 cut(s) 1067, 1629
BsaJI CCNNGG 8 cut(s) 165, 544, 675, 1479, 1695, 2066, 2339, 2470
BsaWI WCCGGW 3 cut(s) 1258, 1822, 2214
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 1424, 1641, 1840
Bse1I ACTGG 6 cut(s) 316, 961, 1031, 1935, 2276, 2393
Bse3DI GCAATG 2 cut(s) 2121, 2759
BseAI TCCGGA 1 cut(s) 1822
BseBI CCWGG 3 cut(s) 167, 1075, 1141
BseDI CCNNGG 8 cut(s) 165, 544, 675, 1479, 1695, 2066, 2339, 2470
BseGI GGATG 6 cut(s) 271, 554, 643, 1475, 1911, 2546
BseLI CCNNNNNNNGG 4 cut(s) 89, 1424, 1641, 1840
BseMI GCAATG 2 cut(s) 2121, 2759
BseMII CTCAG 7 cut(s) 12, 426, 996, 1236, 1712, 1813, 2111
BseNI ACTGG 6 cut(s) 316, 961, 1031, 1935, 2276, 2393
BseSI GKGCMC 3 cut(s) 2074, 2302, 2818
BseXI GCAGC 6 cut(s) 675, 765, 774, 1371, 1860, 2650
BseYI CCCAGC 1 cut(s) 1810
Bsh1236I CGCG 6 cut(s) 1208, 1586, 2068, 2643, 2725, 2801
BshFI GGCC 5 cut(s) 1589, 1864, 2000, 2023, 2621
BshNI GGYRCC 1 cut(s) 2297
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 4 cut(s) 1259, 1823, 2215, 2538
BslFI GGGAC 2 cut(s) 283, 2399
BslI CCNNNNNNNGG 4 cut(s) 89, 1424, 1641, 1840
BsmAI GTCTC 5 cut(s) 115, 401, 743, 940, 2573
BsmFI GGGAC 2 cut(s) 283, 2399
BsmI GAATGC 3 cut(s) 147, 829, 2693
BsnI GGCC 5 cut(s) 1589, 1864, 2000, 2023, 2621
BsoBI CYCGRG 1 cut(s) 746
Bsp119I TTCGAA 5 cut(s) 814, 1788, 1853, 2680, 2697
Bsp1286I GDGCHC 3 cut(s) 2074, 2302, 2818
Bsp13I TCCGGA 1 cut(s) 1822
Bsp1407I TGTACA 2 cut(s) 59, 976
Bsp143I GATC 4 cut(s) 31, 400, 1021, 1261
Bsp19I CCATGG 1 cut(s) 1479
BspACI CCGC 8 cut(s) 1206, 1586, 1632, 2066, 2068, 2167, 2723, 2801
BspANI GGCC 5 cut(s) 1589, 1864, 2000, 2023, 2621
BspCNI CTCAG 7 cut(s) 13, 427, 997, 1235, 1713, 1812, 2110
BspEI TCCGGA 1 cut(s) 1822
BspFNI CGCG 6 cut(s) 1208, 1586, 2068, 2643, 2725, 2801
BspLI GGNNCC 6 cut(s) 27, 271, 1263, 1323, 2165, 2299
BspMI ACCTGC 1 cut(s) 2653
BspPI GGATC 2 cut(s) 1256, 1269
BspT104I TTCGAA 5 cut(s) 814, 1788, 1853, 2680, 2697
BspT107I GGYRCC 1 cut(s) 2297
BspTI CTTAAG 1 cut(s) 2009
BsrDI GCAATG 2 cut(s) 2121, 2759
BsrGI TGTACA 2 cut(s) 59, 976
BsrI ACTGG 6 cut(s) 316, 961, 1031, 1935, 2276, 2393
BssECI CCNNGG 8 cut(s) 165, 544, 675, 1479, 1695, 2066, 2339, 2470
BssMI GATC 4 cut(s) 31, 400, 1021, 1261
BssNI GRCGYC 2 cut(s) 1067, 1629
BssT1I CCWWGG 4 cut(s) 675, 1479, 1695, 2470
Bst2UI CCWGG 3 cut(s) 167, 1075, 1141
Bst4CI ACNGT 8 cut(s) 341, 531, 904, 1093, 1444, 1594, 1772, 2615
BstACI GRCGYC 2 cut(s) 1067, 1629
BstAFI CTTAAG 1 cut(s) 2009
BstAPI GCANNNNNTGC 1 cut(s) 787
BstAUI TGTACA 2 cut(s) 59, 976
BstBI TTCGAA 5 cut(s) 814, 1788, 1853, 2680, 2697
BstC8I GCNNGC 4 cut(s) 248, 1655, 2070, 2222
BstDEI CTNAG 9 cut(s) 21, 435, 1005, 1222, 1658, 1721, 1799, 2097, 2735
BstDSI CCRYGG 3 cut(s) 1479, 2066, 2339
BstF5I GGATG 6 cut(s) 271, 554, 643, 1475, 1911, 2546
BstFNI CGCG 6 cut(s) 1208, 1586, 2068, 2643, 2725, 2801
BstHHI GCGC 3 cut(s) 759, 2643, 2727
BstKTI GATC 4 cut(s) 34, 403, 1024, 1264
BstMAI GTCTC 5 cut(s) 115, 401, 743, 940, 2573
BstMBI GATC 4 cut(s) 31, 400, 1021, 1261
BstMWI GCNNNNNNNGC 8 cut(s) 784, 787, 796, 1211, 1628, 1870, 1922, 2020
BstNI CCWGG 3 cut(s) 167, 1075, 1141
BstNSI RCATGY 1 cut(s) 2224
BstPAI GACNNNNGTC 2 cut(s) 2400, 2565
BstSCI CCNGG 3 cut(s) 165, 1073, 1139
BstSFI CTRYAG 1 cut(s) 527
BstSLI GKGCMC 3 cut(s) 2074, 2302, 2818
BstUI CGCG 6 cut(s) 1208, 1586, 2068, 2643, 2725, 2801
BstV1I GCAGC 6 cut(s) 675, 765, 774, 1371, 1860, 2650
BstV2I GAAGAC 3 cut(s) 803, 1062, 2274
BstX2I RGATCY 1 cut(s) 1261
BstXI CCANNNNNNTGG 2 cut(s) 1496, 1597
BstYI RGATCY 1 cut(s) 1261
BsuRI GGCC 5 cut(s) 1589, 1864, 2000, 2023, 2621
BtgI CCRYGG 3 cut(s) 1479, 2066, 2339
BtrI CACGTC 1 cut(s) 2017
BtsCI GGATG 6 cut(s) 271, 554, 643, 1475, 1911, 2546
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 8 cut(s) 18, 159, 842, 1038, 1353, 1590, 1928, 2861
BveI ACCTGC 1 cut(s) 2653
Cac8I GCNNGC 4 cut(s) 248, 1655, 2070, 2222
CfoI GCGC 3 cut(s) 759, 2643, 2727
Cfr13I GGNCC 4 cut(s) 270, 1486, 1862, 1999
Cfr42I CCGCGG 1 cut(s) 2069
CseI GACGC 3 cut(s) 1304, 1592, 1637
Csp6I GTAC 9 cut(s) 60, 837, 954, 977, 1508, 1640, 1989, 2176, 2577
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviQI GTAC 9 cut(s) 60, 837, 954, 977, 1508, 1640, 1989, 2176, 2577
DdeI CTNAG 9 cut(s) 21, 435, 1005, 1222, 1658, 1721, 1799, 2097, 2735
DpnI GATC 4 cut(s) 33, 402, 1023, 1263
DpnII GATC 4 cut(s) 31, 400, 1021, 1261
DraI TTTAAA 1 cut(s) 2673
EaeI YGGCCR 1 cut(s) 1587
Eco130I CCWWGG 4 cut(s) 675, 1479, 1695, 2470
Eco47I GGWCC 2 cut(s) 270, 1486
Eco57I CTGAAG 3 cut(s) 119, 230, 906
Eco88I CYCGRG 1 cut(s) 746
EcoRI GAATTC 1 cut(s) 877
EcoRII CCWGG 3 cut(s) 165, 1073, 1139
EcoT14I CCWWGG 4 cut(s) 675, 1479, 1695, 2470
ErhI CCWWGG 4 cut(s) 675, 1479, 1695, 2470
FaqI GGGAC 2 cut(s) 283, 2399
FauI CCCGC 1 cut(s) 2061
FbaI TGATCA 1 cut(s) 1021
FblI GTMKAC 2 cut(s) 5, 2824
Fnu4HI GCNGC 9 cut(s) 664, 779, 788, 1206, 1360, 1587, 1632, 1874, 2639
FokI GGATG 6 cut(s) 278, 561, 650, 1462, 1918, 2553
Fsp4HI GCNGC 9 cut(s) 664, 779, 788, 1206, 1360, 1587, 1632, 1874, 2639
FspBI CTAG 6 cut(s) 332, 560, 611, 1404, 2730, 2787
GlaI GCGC 3 cut(s) 758, 2642, 2726
GluI GCNGC 9 cut(s) 664, 779, 788, 1206, 1360, 1587, 1632, 1874, 2639
GsaI CCCAGC 1 cut(s) 1814
GsuI CTGGAG 3 cut(s) 272, 482, 1122
HaeIII GGCC 5 cut(s) 1589, 1864, 2000, 2023, 2621
HapII CCGG 4 cut(s) 1259, 1823, 2215, 2538
HgaI GACGC 3 cut(s) 1304, 1592, 1637
HhaI GCGC 3 cut(s) 759, 2643, 2727
Hin1I GRCGYC 2 cut(s) 1067, 1629
Hin6I GCGC 3 cut(s) 757, 2641, 2725
HinP1I GCGC 3 cut(s) 757, 2641, 2725
HincII GTYRAC 2 cut(s) 6, 1080
HindII GTYRAC 2 cut(s) 6, 1080
HindIII AAGCTT 3 cut(s) 64, 244, 797
HpaII CCGG 4 cut(s) 1259, 1823, 2215, 2538
HphI GGTGA 2 cut(s) 71, 1459
Hpy166II GTNNAC 9 cut(s) 6, 79, 1080, 1351, 1508, 1627, 2094, 2176, 2825
Hpy8I GTNNAC 9 cut(s) 6, 79, 1080, 1351, 1508, 1627, 2094, 2176, 2825
Hpy99I CGWCG 1 cut(s) 2406
HpyAV CCTTC 3 cut(s) 185, 224, 2828
HpyCH4III ACNGT 8 cut(s) 341, 531, 904, 1093, 1444, 1594, 1772, 2615
HpyCH4IV ACGT 6 cut(s) 41, 819, 1067, 1784, 2016, 2841
HpyF10VI GCNNNNNNNGC 8 cut(s) 784, 787, 796, 1211, 1628, 1870, 1922, 2020
HpyF3I CTNAG 9 cut(s) 21, 435, 1005, 1222, 1658, 1721, 1799, 2097, 2735
HpySE526I ACGT 6 cut(s) 41, 819, 1067, 1784, 2016, 2841
Hsp92I GRCGYC 2 cut(s) 1067, 1629
HspAI GCGC 3 cut(s) 757, 2641, 2725
Kpn2I TCCGGA 1 cut(s) 1822
Ksp22I TGATCA 1 cut(s) 1021
KspI CCGCGG 1 cut(s) 2069
Kzo9I GATC 4 cut(s) 31, 400, 1021, 1261
LmnI GCTCC 4 cut(s) 253, 419, 641, 2587
Lsp1109I GCAGC 6 cut(s) 675, 765, 774, 1371, 1860, 2650
LweI GCATC 5 cut(s) 364, 456, 1087, 1513, 1934
MaeI CTAG 6 cut(s) 332, 560, 611, 1404, 2730, 2787
MaeII ACGT 6 cut(s) 41, 819, 1067, 1784, 2016, 2841
MaeIII GTNAC 5 cut(s) 895, 1033, 1780, 1975, 2053
MalI GATC 4 cut(s) 33, 402, 1023, 1263
MboI GATC 4 cut(s) 31, 400, 1021, 1261
MfeI CAATTG 3 cut(s) 297, 782, 1058
MflI RGATCY 1 cut(s) 1261
MhlI GDGCHC 3 cut(s) 2074, 2302, 2818
MlyI GAGTC 6 cut(s) 143, 745, 896, 1352, 1655, 1745
MmeI TCCRAC 3 cut(s) 1389, 1592, 2515
MroI TCCGGA 1 cut(s) 1822
MroXI GAANNNNTTC 4 cut(s) 174, 1047, 2450, 2507
MseI TTAA 9 cut(s) 692, 806, 906, 930, 1370, 1430, 1794, 2010, 2672
MslI CAYNNNNRTG 2 cut(s) 264, 2811
MspA1I CMGCKG 3 cut(s) 778, 1040, 2068
MspCI CTTAAG 1 cut(s) 2009
MspI CCGG 4 cut(s) 1259, 1823, 2215, 2538
MspR9I CCNGG 3 cut(s) 167, 1075, 1141
MunI CAATTG 3 cut(s) 297, 782, 1058
Mva1269I GAATGC 3 cut(s) 147, 829, 2693
MvaI CCWGG 3 cut(s) 167, 1075, 1141
MvnI CGCG 6 cut(s) 1208, 1586, 2068, 2643, 2725, 2801
MwoI GCNNNNNNNGC 8 cut(s) 784, 787, 796, 1211, 1628, 1870, 1922, 2020
NcoI CCATGG 1 cut(s) 1479
NdeII GATC 4 cut(s) 31, 400, 1021, 1261
NlaIV GGNNCC 6 cut(s) 27, 271, 1263, 1323, 2165, 2299
NmeAIII GCCGAG 3 cut(s) 569, 2459, 2550
NmuCI GTSAC 1 cut(s) 1033
NspI RCATGY 1 cut(s) 2224
NspV TTCGAA 5 cut(s) 814, 1788, 1853, 2680, 2697
PaeI GCATGC 1 cut(s) 2224
PaeR7I CTCGAG 1 cut(s) 746
PcsI WCGNNNNNNNCGW 1 cut(s) 2329
PctI GAATGC 3 cut(s) 147, 829, 2693
PdmI GAANNNNTTC 4 cut(s) 174, 1047, 2450, 2507
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 9 cut(s) 665, 780, 789, 1207, 1361, 1588, 1633, 1875, 2640
PleI GAGTC 6 cut(s) 142, 745, 895, 1351, 1654, 1744
PpsI GAGTC 6 cut(s) 142, 745, 895, 1351, 1654, 1744
PshAI GACNNNNGTC 2 cut(s) 2400, 2565
Psp1406I AACGTT 2 cut(s) 41, 1784
Psp6I CCWGG 3 cut(s) 165, 1073, 1139
PspFI CCCAGC 1 cut(s) 1810
PspGI CCWGG 3 cut(s) 165, 1073, 1139
PspN4I GGNNCC 6 cut(s) 27, 271, 1263, 1323, 2165, 2299
PspPI GGNCC 4 cut(s) 270, 1486, 1862, 1999
PsuI RGATCY 1 cut(s) 1261
PvuII CAGCTG 2 cut(s) 778, 1040
RsaI GTAC 9 cut(s) 61, 838, 955, 978, 1509, 1641, 1990, 2177, 2578
RsaNI GTAC 9 cut(s) 60, 837, 954, 977, 1508, 1640, 1989, 2176, 2577
RseI CAYNNNNRTG 2 cut(s) 264, 2811
SacII CCGCGG 1 cut(s) 2069
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 9 cut(s) 692, 806, 906, 930, 1370, 1430, 1794, 2010, 2672
SatI GCNGC 9 cut(s) 664, 779, 788, 1206, 1360, 1587, 1632, 1874, 2639
Sau3AI GATC 4 cut(s) 31, 400, 1021, 1261
Sau96I GGNCC 4 cut(s) 270, 1486, 1862, 1999
ScaI AGTACT 2 cut(s) 955, 2578
SchI GAGTC 6 cut(s) 143, 745, 896, 1352, 1655, 1745
ScrFI CCNGG 3 cut(s) 167, 1075, 1141
SduI GDGCHC 3 cut(s) 2074, 2302, 2818
SfaNI GCATC 5 cut(s) 364, 456, 1087, 1513, 1934
SfcI CTRYAG 1 cut(s) 527
Sfr274I CTCGAG 1 cut(s) 746
Sfr303I CCGCGG 1 cut(s) 2069
SfuI TTCGAA 5 cut(s) 814, 1788, 1853, 2680, 2697
SgrBI CCGCGG 1 cut(s) 2069
SinI GGWCC 2 cut(s) 270, 1486
SlaI CTCGAG 1 cut(s) 746
SmiMI CAYNNNNRTG 2 cut(s) 264, 2811
SmlI CTYRAG 6 cut(s) 616, 746, 1715, 1733, 1757, 2009
SmoI CTYRAG 6 cut(s) 616, 746, 1715, 1733, 1757, 2009
SpeI ACTAGT 1 cut(s) 2729
SphI GCATGC 1 cut(s) 2224
SsiI CCGC 8 cut(s) 1206, 1586, 1632, 2066, 2068, 2167, 2723, 2801
SspI AATATT 1 cut(s) 183
SspMI CTAG 6 cut(s) 332, 560, 611, 1404, 2730, 2787
StyD4I CCNGG 3 cut(s) 165, 1073, 1139
StyI CCWWGG 4 cut(s) 675, 1479, 1695, 2470
TaaI ACNGT 8 cut(s) 341, 531, 904, 1093, 1444, 1594, 1772, 2615
TaiI ACGT 6 cut(s) 44, 822, 1070, 1787, 2019, 2844
TaqII GACCGA 1 cut(s) 1193
TatI WGTACW 6 cut(s) 59, 836, 953, 976, 1507, 2576
TauI GCSGC 3 cut(s) 1208, 1589, 1634
Tru1I TTAA 9 cut(s) 692, 806, 906, 930, 1370, 1430, 1794, 2010, 2672
Tru9I TTAA 9 cut(s) 692, 806, 906, 930, 1370, 1430, 1794, 2010, 2672
TscAI CASTG 8 cut(s) 25, 166, 849, 1038, 1353, 1597, 1935, 2868
TseFI GTSAC 1 cut(s) 1033
TseI GCWGC 6 cut(s) 663, 778, 787, 1359, 1873, 2638
Tsp45I GTSAC 1 cut(s) 1033
TspDTI ATGAA 9 cut(s) 183, 248, 254, 496, 533, 870, 1122, 1675, 1964
TspGWI ACGGA 4 cut(s) 792, 863, 1212, 1493
TspRI CASTG 8 cut(s) 25, 166, 849, 1038, 1353, 1597, 1935, 2868
Van91I CCANNNNNTGG 1 cut(s) 89
Vha464I CTTAAG 1 cut(s) 2009
VpaK11BI GGWCC 2 cut(s) 270, 1486
XapI RAATTY 6 cut(s) 877, 1110, 1682, 1790, 1826, 1849
XbaI TCTAGA 1 cut(s) 2786
XceI RCATGY 1 cut(s) 2224
XhoI CTCGAG 1 cut(s) 746
XmiI GTMKAC 2 cut(s) 5, 2824
XmnI GAANNNNTTC 4 cut(s) 174, 1047, 2450, 2507
XspI CTAG 6 cut(s) 332, 560, 611, 1404, 2730, 2787
ZraI GACGTC 1 cut(s) 1068
ZrmI AGTACT 2 cut(s) 955, 2578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.