Rw7G041270

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000129
Physical Location & Seq
Forward (+)
64296122 .. 64304023
7902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041270.1

Sequence Viewer

Length: 5031 bp
ATGGGCTTGTCGATCCGCCTCAGTGTCTTGTCTGCCACTTCCCTACTAGTTTTCTTCTCTGCTCTGTTTCTCTTTAACTTTCTCTCTTTATGGTTGTACTTCTTGTTCTTCTTCTCCACTGTTTGTATTTGCGGCTGCCTTTTGGCTTTCAAACTCAGACCAACAACACTCCCCAGTAGTCCTTCAGTCACCACCGAAGTAGATATTCCTTCTTCTTCTTCTTCTTCTCCTCCATCCGGTAAATTGACGTACGATGTGTTCCTCAGCTTCAGTGGTAAAGACACCCGCAAAAATTTCACAGACCATCTTTACACTGCTCTCAAACAGAAAGGGATATACACATTTAGAGATGACGAAGAACTTGTGAGGGGGGAATCGATTGGTCCAAATCTCTTGAAAGCAATTGAAGAGTCAAGATATGTAATTGCTGTTTTCTCACGAAGTTACGCCGATTCTGCATGGTGTTTGGATGAGATCGCAAAGGTCGCTAAATGCATGAATGAAATGGGACAAGTAGTCCTCCCAGTGTTCTATGATGTCGATCCATATGAGGTACGGAGACAAAAAGGCCAACACTTTGAGAAAGCATTTCAGAAGCATCAAAAGAGGTATAAAGGTGATCCAGACAGAGTGAAGGGCTGGAAAGATGCTCTTTTTCAAGTAGGCAATCTCTCTGGATGGCATCTGCAAGATGGGTATGAATCCAAAGTTATTCAAGAAATTGTCGAAAAGATTTTCACTGAGTTAAATCAATTAATCCCAATATCTGAGGGTTTAGTTGGGATGGATTCACACCTGAATGAAATGCTTTCGTACTTAGACATCGGGTGTCCTGATGTTCGTATCATAGGGATTTGTGGTATGGGTGGTATCGGTAAGACAACTATTGCACAAGTGGTTTTTGAAAGGGTACAAGCTCAGTTTGAAGGTTGCAGCTTTCTCGAGAATGTTAGAGAGGTAATTGAAAAGCAAGGTGCCGTTCATTTACAAGAGCAACTTCTTTCGGACTTGCTGAAATGTAATGTAAATGTACAGAACACTAAAATGGGAAAAAACATAATGAGGCAGAGACTACATACTAAAATGGTTCTGATCATTCTTGATGACGTGGACCAAGAAGAACAATTGGAAGCACTGTGTGAGCGTGAATCATTTGGTCCAGGGAGTAGAATCATCATAACTTCAAGAGATGAACATTTGCTCAGTGCAGTTGAAGGAGATAAAGTGTACAATGTGAATCCATTAACTGATGCTGAAGCTCTTCAGCTCTTTAGTATGAAAGCCTTTAAGAAAGACCAGCTGGTTGGAGAAGAAGTTCTCAAGCTATCGAAGGAATTTTTGAATTATGCTAATGGCCTTCCATTAGCTATTAAAGTTTTAGGTTCTTCTGTTAAGGGTAGAAGTGTAGAATTGTGGTCAAGTGCATTAGATAGACTAAAAAAAAGTCCTGATAAAAAAATTATTAATGTTCTCAAGGTTAGTTTTGATGGATTAGAACCAAGGGAACAGAAAATTTTTTTGGACATCGCATGTTTCCTTAAAGGGGTGAACATAGATCGTGTAAGAAGAATACTACAGGGTAGTGATGCCCACTGTCCAGACTTTGATATACAGGTTCTCCTAGACAAATCTATGGTAACTCTATTTGGAAAAAAATTGTGGATGCATGATTTGATACAAGAATTGGGTTGGGAAGTTGTTCGCCAAGAAAGCCATGATGAACCTGGAAAACGTAGTAGATTGTGGCTTTCAAGTGAGATCATTGATGTACTTGATCAGAGTAAGGCAACGAGTGCAGTTCAAAGCATACTCCTCCAAGGTCCAACTAAAGATGATGTGGTTTACTCAGTTAATGAGTCTTTCTCAAATATGGACAGATTAAGATTGCTCAAAATTTGGAATGTGAAGTTTTCTGGAAACATCAAATATCTTTCTAAGAAGTTACAGTTTCTGGAATGGGATGAATGTCCTTTAGATTCCTTCCCCTCAGACTTTCAACCAGATTACCTTGTTGAACTTCACATGCATTCAAGCCGCATCAAACAACTATGGAGAGGACAAAGAGGATGGAGCATGCTACGGCTTATCGATATGAGTGGTGCACAATACTTGATGTCGACTCCAGACTTCACTGAGGTTCCAGATCTTGAGACATTGGTGCTTCAAGATTGTACGAGTTTGGTTGAGATTCACCCATCTCTTGGATTCCTCAATAAACTTGTCTGTTTGAATATGAGAAATTGCAACTGTGTTGAGAGAATTCCACCTTTTGCTCGTTTGGAGTCCCTTCAATTTCTCAGTCTTTCATTGTGTTCTAGACTGAAGAAGTTTCCTGAAATTGAAGGAAACATGAAAAGCTTGTTGGAGCTTCATTTGGATGGTACTAGCATTGAGGAACTGCCCCCATCAGTTGAACGTTTGACTGGTCTTACCATGTTGAATCTAACAGATTGTAAAAACCTTTCGCATCTCCCTAGTACCATTCAGTGCTTGACATCTTTGAAAAGTCTCTATCTAACAGGATGCTCAAAGCTGGATGAAATACCTGAGAATCTGAACTGTGTGGAATGTCTGGAGGAGCTTTATTTAGGTGGAACTGCCATACGAGAGTTACTGTTCATTGTAGGGATGAAGAATCTAAAATCTTTATCTTGCCAAGGATGTAAAGGTCATGCTCTGACGGGTTTGTTGTTGCCTGCTTCACTATGGAGATTAACTTCATTGATAATGCTAGACTTAAGTGCTTGCAATCTGATGGATGGAGCAATTCCCAATGATCTTAGCGGCTTAATTTCCTTAAGAATGTTATGTTTAGATGGTAACAGTTTTGTCCGATTACCTGAAAGTATCTGTCAACTCTTAAAGCTCGAGACTCTCAGCTTGAGCAACTGTAGACAACTTCAATTGGTGCCAAAGCTTCCATCAAGTGTTGAAAATGTGCTTGCAGAAGATTGTACTTCACTGATGGATTTTCCGAATCAATTCAAAATAATTACTTCACCTGAGTCGGGAGTTACCACAGTCAATTCCCTCAGTTCAAGTGGTTTGGCATTTAGAGACCCATACAGTTTGAAAGCGTGGAATATTTTAGGAAAGGGAAATGGACCTTGGGACATACAATTTTCCTTGAGAAGAGATGAGCATGTGGAGTGGAAGCAAGTGGATCATTTGTCACTGCCATTTCTTCTAAAAGACATTGAGCTTTCCCATTCCTCTTCAAGTCACTTTAATACCATCCATATTGATAATGAAATTCCAGAGTGGTTCAGCACTAAATCCACAGGCAATTTCATATCAATCCCGATACCTCCAAATCTGACAGATGATTACAAGTGGAAGGGGGTTGCCTCTTGCGCTGTTTTCTCAGTCAAGGGACATAATATGAGTGCTATCTCCGTTATTGAGTCAGGTTTTGAAACTTCTAATTGCTTGTATCAATGCACACTGGAAACTGATCTTTTCTCTATGAAACCATCTGTCTTTGACGGGGAAGAAAAGCACCACTTCATTAGATCAAGTTCTCATCTGCTTTTCATTTCCTATTTAGCTAGTTTTCATTTTTCAAAGCAGTTGAATCAATCAACTGTGGTGGGGGCTAGGTTTGAAACCAACAACCCATTCATGGACGTCCAGGAATGTGGAATTCGTCTAGTCTATGAGCAAGATGATGGATGGTATACCAAACTGATCCCTGGTGATACTGGGACTTGTCTAAATGAAGTTTTAGACGCTATTCGAGAATCTGGCTGGATTAGTGAAGGGGATACGTGTTTGAAATGGGAGAAATTTATTCCACCCTTGGAACAAGACTCCAGAATTCTGCTGGGAAAGAATATCAAGTCTGTTCTTCCAAGATACCTTGAGGCGTTAACACATAATTCTGCAACGTATAGATTTAACCTCAGTGGAAGCCCAGCATGGTTTGACTACTCATGTGGTCTTAACACTGATACAGGGCCATGGCCCTCTGTGTCAATCGAGATTCCTCAGAATCTACACAAGAGTAAGAAGTGGATGGGATTTGCAATATGCGCATCAATTGCAGAGGAACAGCAGCATATGACAGAAGAGGAGTATTGTGTTTACTTTCAATTCATAATGGGTGAATCTAATGAGGATATTCCCCGAGAACTCGAGTATGTCGTGGACATGTGGTCAGAAGAACATAATCGACTTTTGGTTGTTTACATACCGCGAGCAGAGTTTCCCGAAGATTTTATGCATCCATCACCAACTGTAATGAACATTTTCTTCGGAACCAATTGCCCTCATGTAGAGGTTCGAAGAAGTGGGATCCGTATTGTGTACCAGGAAGATTTCCAAGGCTTTGTTGAGACAGTCATCCAGTGCATGCAAAGAGAAGATACCCTTGAGCTTTATGATAAATGGGTGGTAGAAGATTGGATAGACTTGATAGGATTGCAAGGTGGTCATTTATGTACTTCAAACAAACTTGATTCCATAACCCGACGAGCAAGAAAGTTCGAATTACTCTCTCAAAAATATAGAAATCAGGACTGGACTGCTCCTTCACTATTCTTTTGTGTATTCTATGGAACTGAAATTTCCAAGTGGAAATGGTTCATGCATTTCAACGAAGGCAACTCTGCAGAAATCCAACTGCCCCTGAATTTGTTTGATGATGCTAATTGGTTAGGCATTGCTGTATGTGCTTTTTTGTGGGTATCCCACGAAGATCCAAACATGATTCTTGGCACTCCTGATTCAGAGTTTAATGTGCTTAGTTGTTGTCTGGACTCTGATGTTTCTTGGGACTGCTTATTTGATGTCAAATTTCAGCATCTTGTGCCGAAACTCAAGCCGTCAGACTTTGCAATTGATTTGACTTTGTTTGTCTATATACCGCGCAATGGTAAATATTTTAAGTTCTGGAGGCAATGTAATCTGGCCAGGGTAACATTTTCGTCCCCTAGCCCATGCTTAGGACTGCATAGTTGTGCCCTTCGCCTAGAATTCAAGGAGGATGTTGAAGATCTTGTACAGACACTTACCCTCTGCGAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1676

Amino Acids

190.46

Weight (kDa)

5.3

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 84 - 255 2e-51 TIR domain
TIR_2 PF13676 86 - 182 2.7e-16 TIR domain
NB-ARC PF00931 266 - 432 1.7e-23 NB-ARC domain
NACHT PF05729 283 - 429 6.8e-06 NACHT domain
WHD_ROQ1 PF23282 501 - 571 3.5e-15 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 751 - 883 1.1e-09 Leucine-rich repeat region
LRR_13 PF23286 760 - 847 7.5e-13 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 900 - 977 9.8e-07 Leucine-rich repeat region
C-JID PF20160 1082 - 1222 8e-09 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 3630
Acc16I TGCGCA 1 cut(s) 4033
AccB1I GGYRCC 2 cut(s) 974, 2908
AccB7I CCANNNNNTGG 1 cut(s) 2201
AccI GTMKAC 3 cut(s) 2117, 2893, 3677
AccII CGCG 2 cut(s) 4195, 4867
AciI CCGC 7 cut(s) 16, 132, 286, 2035, 2784, 4193, 4865
AclI AACGTT 1 cut(s) 2416
AclWI GGATC 8 cut(s) 7, 536, 614, 3171, 3682, 4288, 4301, 4691
AcoI YGGCCR 1 cut(s) 4908
AcuI CTGAAG 5 cut(s) 168, 253, 1247, 1275, 2342
AcyI GRCGYC 1 cut(s) 3627
AdeI CACNNNGTG 1 cut(s) 1139
AfiI CCNNNNNNNGG 7 cut(s) 236, 1543, 2201, 3008, 3622, 4871, 4943
AflII CTTAAG 2 cut(s) 2737, 2797
AflIII ACRYGT 2 cut(s) 3767, 4149
AhdI GACNNNNNGTC 2 cut(s) 515, 4153
AhlI ACTAGT 1 cut(s) 46
AjiI CACGTC 1 cut(s) 1108
AjnI CCWGG 6 cut(s) 1159, 1723, 3630, 3691, 4308, 4910
AjuI GAANNNNNNNTTGG 8 cut(s) 1502, 1534, 2345, 2377, 3091, 3123, 3602, 3634
AloI GAACNNNNNNTCC 2 cut(s) 1299, 1331
Alw21I GWGCWC 1 cut(s) 2104
Alw26I GTCTC 7 cut(s) 553, 1063, 2144, 2513, 2864, 3051, 4328
Alw44I GTGCAC 1 cut(s) 2100
AlwI GGATC 8 cut(s) 7, 536, 614, 3171, 3682, 4288, 4301, 4691
AlwNI CAGNNNCTG 1 cut(s) 1951
Ama87I CYCGRG 4 cut(s) 941, 2867, 4125, 4133
AoxI GGCC 5 cut(s) 568, 1354, 3956, 3962, 4908
ApaLI GTGCAC 1 cut(s) 2100
ApeKI GCWGC 3 cut(s) 135, 933, 4054
ArsI GACNNNNNNTTYG 2 cut(s) 4766, 4798
AseI ATTAAT 2 cut(s) 755, 1464
Asp700I GAANNNNTTC 6 cut(s) 1260, 1314, 1698, 2981, 4247, 4580
AspLEI GCGC 3 cut(s) 3356, 4034, 4869
AspS9I GGNCC 7 cut(s) 383, 1111, 1157, 1820, 3104, 3956, 3963
AsuHPI GGTGA 8 cut(s) 181, 629, 1558, 2183, 2991, 3707, 4115, 4221
AsuII TTCGAA 2 cut(s) 4282, 4485
AvaI CYCGRG 4 cut(s) 941, 2867, 4125, 4133
AvaII GGWCC 5 cut(s) 383, 1111, 1157, 1820, 3104
BaeGI GKGCMC 2 cut(s) 2104, 4963
BalI TGGCCA 1 cut(s) 4910
BamHI GGATCC 1 cut(s) 4293
BanI GGYRCC 2 cut(s) 974, 2908
BarI GAAGNNNNNNTAC 2 cut(s) 4983, 5015
Bbv12I GWGCWC 1 cut(s) 2104
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 122, 945, 4066
BceAI ACGGC 3 cut(s) 962, 2096, 4807
BcgI CGANNNNNNTGC 2 cut(s) 922, 956
BciT130I CCWGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
BciVI GTATCC 2 cut(s) 3757, 4696
BclI TGATCA 2 cut(s) 1092, 1774
BcoDI GTCTC 7 cut(s) 553, 1063, 2144, 2513, 2864, 3051, 4328
BcuI ACTAGT 1 cut(s) 46
BfmI CTRYAG 3 cut(s) 1574, 2890, 4608
BfrI CTTAAG 2 cut(s) 2737, 2797
BfuI GTATCC 2 cut(s) 3757, 4696
BglII AGATCT 2 cut(s) 2143, 4993
BisI GCNGC 6 cut(s) 133, 136, 934, 2035, 2785, 4055
BlsI GCNGC 6 cut(s) 134, 137, 935, 2036, 2786, 4056
Bme1390I CCNGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
Bme18I GGWCC 5 cut(s) 383, 1111, 1157, 1820, 3104
BmeRI GACNNNNNGTC 2 cut(s) 515, 4153
BmeT110I CYCGRG 4 cut(s) 941, 2867, 4125, 4133
BmgBI CACGTC 1 cut(s) 1108
BmgT120I GGNCC 7 cut(s) 383, 1111, 1157, 1820, 3104, 3956, 3963
BmiI GGNNCC 5 cut(s) 976, 2139, 2910, 4258, 4295
BmrFI CCNGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
BmrI ACTGGG 3 cut(s) 168, 518, 3711
BmuI ACTGGG 3 cut(s) 168, 518, 3711
BplI GAGNNNNNCTC 2 cut(s) 1847, 1879
BpmI CTGGAG 4 cut(s) 2106, 2594, 3796, 4912
Bpu10I CCTNAGC 2 cut(s) 263, 4942
Bpu14I TTCGAA 2 cut(s) 4282, 4485
BpuEI CTTGAG 8 cut(s) 1304, 1457, 2168, 2902, 3148, 3881, 4391, 4802
Bsa29I ATCGAT 2 cut(s) 377, 2088
BsaAI YACGTR 1 cut(s) 3768
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 3627
BsaI GGTCTC 1 cut(s) 3051
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 8 cut(s) 1209, 1239, 1299, 1329, 1602, 1632, 4885, 4915
Bsc4I CCNNNNNNNGG 7 cut(s) 236, 1543, 2201, 3008, 3622, 4871, 4943
Bse1I ACTGG 7 cut(s) 174, 524, 2428, 3450, 3706, 4345, 4523
Bse3DI GCAATG 3 cut(s) 4659, 4876, 4904
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
BseCI ATCGAT 2 cut(s) 377, 2088
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 7 cut(s) 236, 1543, 2201, 3008, 3622, 4871, 4943
BseMI GCAATG 3 cut(s) 4659, 4876, 4904
BseNI ACTGG 7 cut(s) 174, 524, 2428, 3450, 3706, 4345, 4523
BseRI GAGGAG 4 cut(s) 219, 1802, 2591, 4085
BseSI GKGCMC 2 cut(s) 2104, 4963
BseXI GCAGC 3 cut(s) 122, 945, 4066
BseYI CCCAGC 2 cut(s) 3823, 3913
BsgI GTGCAG 2 cut(s) 1227, 1815
Bsh1236I CGCG 2 cut(s) 4195, 4867
BshFI GGCC 5 cut(s) 570, 1356, 3958, 3964, 4910
BshNI GGYRCC 2 cut(s) 974, 2908
BshVI ATCGAT 2 cut(s) 377, 2088
BsiHKAI GWGCWC 1 cut(s) 2104
BsiHKCI CYCGRG 4 cut(s) 941, 2867, 4125, 4133
BsiSI CCGG 1 cut(s) 237
BsiWI CGTACG 1 cut(s) 249
BslFI GGGAC 7 cut(s) 522, 2269, 3125, 3387, 3718, 4787, 4912
BslI CCNNNNNNNGG 7 cut(s) 236, 1543, 2201, 3008, 3622, 4871, 4943
BsmAI GTCTC 7 cut(s) 553, 1063, 2144, 2513, 2864, 3051, 4328
BsmFI GGGAC 7 cut(s) 522, 2269, 3125, 3387, 3718, 4787, 4912
BsmI GAATGC 1 cut(s) 2026
BsnI GGCC 5 cut(s) 570, 1356, 3958, 3964, 4910
Bso31I GGTCTC 1 cut(s) 3051
BsoBI CYCGRG 4 cut(s) 941, 2867, 4125, 4133
Bsp119I TTCGAA 2 cut(s) 4282, 4485
Bsp1286I GDGCHC 2 cut(s) 2104, 4963
Bsp1407I TGTACA 3 cut(s) 1030, 1227, 4999
Bsp19I CCATGG 1 cut(s) 3959
BspACI CCGC 7 cut(s) 16, 132, 286, 2035, 2784, 4193, 4865
BspANI GGCC 5 cut(s) 570, 1356, 3958, 3964, 4910
BspDI ATCGAT 2 cut(s) 377, 2088
BspFNI CGCG 2 cut(s) 4195, 4867
BspLI GGNNCC 5 cut(s) 976, 2139, 2910, 4258, 4295
BspMAI CTGCAG 1 cut(s) 4612
BspPI GGATC 8 cut(s) 7, 536, 614, 3171, 3682, 4288, 4301, 4691
BspQI GCTCTTC 1 cut(s) 1266
BspT104I TTCGAA 2 cut(s) 4282, 4485
BspT107I GGYRCC 2 cut(s) 974, 2908
BspTI CTTAAG 2 cut(s) 2737, 2797
BspTNI GGTCTC 1 cut(s) 3051
BsrDI GCAATG 3 cut(s) 4659, 4876, 4904
BsrGI TGTACA 3 cut(s) 1030, 1227, 4999
BsrI ACTGG 7 cut(s) 174, 524, 2428, 3450, 3706, 4345, 4523
BssNAI GTATAC 1 cut(s) 3678
BssNI GRCGYC 1 cut(s) 3627
BssT1I CCWWGG 7 cut(s) 1499, 1816, 2656, 3107, 3798, 3959, 4321
Bst1107I GTATAC 1 cut(s) 3678
Bst2UI CCWGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
Bst6I CTCTTC 5 cut(s) 402, 1266, 3127, 3220, 4062
BstACI GRCGYC 1 cut(s) 3627
BstAFI CTTAAG 2 cut(s) 2737, 2797
BstAPI GCANNNNNTGC 3 cut(s) 1793, 4040, 4807
BstAUI TGTACA 3 cut(s) 1030, 1227, 4999
BstBAI YACGTR 1 cut(s) 3768
BstBI TTCGAA 2 cut(s) 4282, 4485
BstC8I GCNNGC 6 cut(s) 2075, 2697, 2746, 2943, 4197, 4352
BstDSI CCRYGG 1 cut(s) 3959
BstFNI CGCG 2 cut(s) 4195, 4867
BstHHI GCGC 3 cut(s) 3356, 4034, 4869
BstMAI GTCTC 7 cut(s) 553, 1063, 2144, 2513, 2864, 3051, 4328
BstMWI GCNNNNNNNGC 9 cut(s) 455, 485, 1710, 1793, 3353, 4031, 4040, 4670, 4807
BstNI CCWGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
BstNSI RCATGY 6 cut(s) 1533, 2026, 2077, 3146, 4153, 4354
BstSCI CCNGG 6 cut(s) 1159, 1723, 3630, 3691, 4308, 4910
BstSFI CTRYAG 3 cut(s) 1574, 2890, 4608
BstSLI GKGCMC 2 cut(s) 2104, 4963
BstUI CGCG 2 cut(s) 4195, 4867
BstV1I GCAGC 3 cut(s) 122, 945, 4066
BstX2I RGATCY 4 cut(s) 2143, 4293, 4696, 4993
BstXI CCANNNNNNTGG 2 cut(s) 1304, 3638
BstYI RGATCY 4 cut(s) 2143, 4293, 4696, 4993
BstZ17I GTATAC 1 cut(s) 3678
Bsu15I ATCGAT 2 cut(s) 377, 2088
BsuI GTATCC 2 cut(s) 3757, 4696
BsuRI GGCC 5 cut(s) 570, 1356, 3958, 3964, 4910
BsuTUI ATCGAT 2 cut(s) 377, 2088
BtgI CCRYGG 1 cut(s) 3959
BtgZI GCGATG 1 cut(s) 1510
BtrI CACGTC 1 cut(s) 1108
BtsI GCAGTG 2 cut(s) 312, 3173
Cac8I GCNNGC 6 cut(s) 2075, 2697, 2746, 2943, 4197, 4352
CaiI CAGNNNCTG 1 cut(s) 1951
CfoI GCGC 3 cut(s) 3356, 4034, 4869
Cfr13I GGNCC 7 cut(s) 383, 1111, 1157, 1820, 3104, 3956, 3963
ClaI ATCGAT 2 cut(s) 377, 2088
CseI GACGC 1 cut(s) 3737
CspCI CAANNNNNGTGG 2 cut(s) 3570, 3605
DraIII CACNNNGTG 1 cut(s) 1139
DriI GACNNNNNGTC 2 cut(s) 515, 4153
EaeI YGGCCR 1 cut(s) 4908
Eam1104I CTCTTC 5 cut(s) 402, 1266, 3127, 3220, 4062
Eam1105I GACNNNNNGTC 2 cut(s) 515, 4153
EarI CTCTTC 5 cut(s) 402, 1266, 3127, 3220, 4062
EciI GGCGGA 1 cut(s) 5
Eco130I CCWWGG 7 cut(s) 1499, 1816, 2656, 3107, 3798, 3959, 4321
Eco31I GGTCTC 1 cut(s) 3051
Eco47I GGWCC 5 cut(s) 383, 1111, 1157, 1820, 3104
Eco57I CTGAAG 5 cut(s) 168, 253, 1247, 1275, 2342
Eco88I CYCGRG 4 cut(s) 941, 2867, 4125, 4133
EcoRI GAATTC 4 cut(s) 2259, 3642, 3816, 4973
EcoRII CCWGG 6 cut(s) 1159, 1723, 3630, 3691, 4308, 4910
EcoT14I CCWWGG 7 cut(s) 1499, 1816, 2656, 3107, 3798, 3959, 4321
EcoT22I ATGCAT 5 cut(s) 497, 1668, 2028, 4224, 4590
ErhI CCWWGG 7 cut(s) 1499, 1816, 2656, 3107, 3798, 3959, 4321
FalI AAGNNNNNCTT 8 cut(s) 636, 668, 981, 1013, 3488, 3520, 4353, 4385
FaqI GGGAC 7 cut(s) 522, 2269, 3125, 3387, 3718, 4787, 4912
FauI CCCGC 1 cut(s) 293
FauNDI CATATG 2 cut(s) 547, 4059
FbaI TGATCA 2 cut(s) 1092, 1774
FblI GTMKAC 3 cut(s) 2117, 2893, 3677
Fnu4HI GCNGC 6 cut(s) 133, 136, 934, 2035, 2785, 4055
Fsp4HI GCNGC 6 cut(s) 133, 136, 934, 2035, 2785, 4055
FspAI RTGCGCAY 1 cut(s) 4033
FspI TGCGCA 1 cut(s) 4033
GlaI GCGC 3 cut(s) 3355, 4033, 4868
GluI GCNGC 6 cut(s) 133, 136, 934, 2035, 2785, 4055
GsaI CCCAGC 2 cut(s) 3827, 3917
GsuI CTGGAG 4 cut(s) 2106, 2594, 3796, 4912
HaeIII GGCC 5 cut(s) 570, 1356, 3958, 3964, 4910
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 3737
HhaI GCGC 3 cut(s) 3356, 4034, 4869
Hin1I GRCGYC 1 cut(s) 3627
Hin6I GCGC 3 cut(s) 3354, 4032, 4867
HinP1I GCGC 3 cut(s) 3354, 4032, 4867
HincII GTYRAC 3 cut(s) 2118, 2855, 3870
HindII GTYRAC 3 cut(s) 2118, 2855, 3870
HindIII AAGCTT 2 cut(s) 2356, 2915
HpaI GTTAAC 1 cut(s) 3870
HpaII CCGG 1 cut(s) 237
HphI GGTGA 8 cut(s) 181, 629, 1558, 2183, 2991, 3707, 4115, 4221
Hpy99I CGWCG 1 cut(s) 4473
HpyCH4IV ACGT 7 cut(s) 248, 1107, 1732, 2416, 3627, 3767, 3887
HpyF10VI GCNNNNNNNGC 9 cut(s) 455, 485, 1710, 1793, 3353, 4031, 4040, 4670, 4807
HpySE526I ACGT 7 cut(s) 248, 1107, 1732, 2416, 3627, 3767, 3887
Hsp92I GRCGYC 1 cut(s) 3627
HspAI GCGC 3 cut(s) 3354, 4032, 4867
Ksp22I TGATCA 2 cut(s) 1092, 1774
KspAI GTTAAC 1 cut(s) 3870
LguI GCTCTTC 1 cut(s) 1266
LmnI GCTCC 5 cut(s) 2070, 2365, 2578, 2762, 4531
Lsp1109I GCAGC 3 cut(s) 122, 945, 4066
MaeII ACGT 7 cut(s) 248, 1107, 1732, 2416, 3627, 3767, 3887
MfeI CAATTG 6 cut(s) 402, 1124, 2903, 4038, 4261, 4836
MflI RGATCY 4 cut(s) 2143, 4293, 4696, 4993
MhlI GDGCHC 2 cut(s) 2104, 4963
MlsI TGGCCA 1 cut(s) 4910
MluNI TGGCCA 1 cut(s) 4910
MlyI GAGTC 9 cut(s) 419, 1865, 2113, 2291, 2866, 3014, 3413, 3803, 4751
MmeI TCCRAC 4 cut(s) 1285, 1847, 2343, 4642
Mox20I TGGCCA 1 cut(s) 4910
Mph1103I ATGCAT 5 cut(s) 497, 1668, 2028, 4224, 4590
MroXI GAANNNNTTC 6 cut(s) 1260, 1314, 1698, 2981, 4247, 4580
MscI TGGCCA 1 cut(s) 4910
MslI CAYNNNNRTG 4 cut(s) 798, 1043, 2376, 4956
Msp20I TGGCCA 1 cut(s) 4910
MspA1I CMGCKG 1 cut(s) 1300
MspCI CTTAAG 2 cut(s) 2737, 2797
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
MunI CAATTG 6 cut(s) 402, 1124, 2903, 4038, 4261, 4836
Mva1269I GAATGC 1 cut(s) 2026
MvaI CCWGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
MvnI CGCG 2 cut(s) 4195, 4867
MwoI GCNNNNNNNGC 9 cut(s) 455, 485, 1710, 1793, 3353, 4031, 4040, 4670, 4807
NcoI CCATGG 1 cut(s) 3959
NdeI CATATG 2 cut(s) 547, 4059
NlaIV GGNNCC 5 cut(s) 976, 2139, 2910, 4258, 4295
NmuCI GTSAC 3 cut(s) 187, 3171, 3221
NsbI TGCGCA 1 cut(s) 4033
NsiI ATGCAT 5 cut(s) 497, 1668, 2028, 4224, 4590
NspI RCATGY 6 cut(s) 1533, 2026, 2077, 3146, 4153, 4354
NspV TTCGAA 2 cut(s) 4282, 4485
PaeI GCATGC 2 cut(s) 2077, 4354
PaeR7I CTCGAG 3 cut(s) 941, 2867, 4133
PciI ACATGT 1 cut(s) 4149
PciSI GCTCTTC 1 cut(s) 1266
PcsI WCGNNNNNNNCGW 1 cut(s) 4140
PctI GAATGC 1 cut(s) 2026
PdmI GAANNNNTTC 6 cut(s) 1260, 1314, 1698, 2981, 4247, 4580
Pfl23II CGTACG 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 2201
PfoI TCCNGGA 1 cut(s) 3630
PkrI GCNGC 6 cut(s) 134, 137, 935, 2036, 2786, 4056
PleI GAGTC 9 cut(s) 418, 1864, 2113, 2290, 2866, 3013, 3412, 3803, 4751
PpsI GAGTC 9 cut(s) 418, 1864, 2113, 2290, 2866, 3013, 3412, 3803, 4751
Ppu21I YACGTR 1 cut(s) 3768
PscI ACATGT 1 cut(s) 4149
PshBI ATTAAT 2 cut(s) 755, 1464
Psp1406I AACGTT 1 cut(s) 2416
Psp6I CCWGG 6 cut(s) 1159, 1723, 3630, 3691, 4308, 4910
PspFI CCCAGC 2 cut(s) 3823, 3913
PspGI CCWGG 6 cut(s) 1159, 1723, 3630, 3691, 4308, 4910
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 5 cut(s) 976, 2139, 2910, 4258, 4295
PspPI GGNCC 7 cut(s) 383, 1111, 1157, 1820, 3104, 3956, 3963
PspXI VCTCGAGB 1 cut(s) 4133
PsrI GAACNNNNNNTAC 4 cut(s) 89, 121, 242, 274
PstI CTGCAG 1 cut(s) 4612
PstNI CAGNNNCTG 1 cut(s) 1951
PsuI RGATCY 4 cut(s) 2143, 4293, 4696, 4993
PvuII CAGCTG 1 cut(s) 1300
RseI CAYNNNNRTG 4 cut(s) 798, 1043, 2376, 4956
SalI GTCGAC 1 cut(s) 2116
SapI GCTCTTC 1 cut(s) 1266
SatI GCNGC 6 cut(s) 133, 136, 934, 2035, 2785, 4055
Sau96I GGNCC 7 cut(s) 383, 1111, 1157, 1820, 3104, 3956, 3963
SchI GAGTC 9 cut(s) 419, 1865, 2113, 2291, 2866, 3014, 3413, 3803, 4751
ScrFI CCNGG 6 cut(s) 1161, 1725, 3632, 3693, 4310, 4912
SduI GDGCHC 2 cut(s) 2104, 4963
SfcI CTRYAG 3 cut(s) 1574, 2890, 4608
Sfr274I CTCGAG 3 cut(s) 941, 2867, 4133
SfuI TTCGAA 2 cut(s) 4282, 4485
SinI GGWCC 5 cut(s) 383, 1111, 1157, 1820, 3104
SlaI CTCGAG 3 cut(s) 941, 2867, 4133
SmiMI CAYNNNNRTG 4 cut(s) 798, 1043, 2376, 4956
SpeI ACTAGT 1 cut(s) 46
SphI GCATGC 2 cut(s) 2077, 4354
SsiI CCGC 7 cut(s) 16, 132, 286, 2035, 2784, 4193, 4865
SspI AATATT 2 cut(s) 3085, 4880
StyD4I CCNGG 6 cut(s) 1159, 1723, 3630, 3691, 4308, 4910
StyI CCWWGG 7 cut(s) 1499, 1816, 2656, 3107, 3798, 3959, 4321
TaiI ACGT 7 cut(s) 251, 1110, 1735, 2419, 3630, 3770, 3890
TatI WGTACW 7 cut(s) 96, 1030, 1227, 1768, 2954, 4439, 4999
TauI GCSGC 3 cut(s) 135, 2037, 2787
TseFI GTSAC 3 cut(s) 187, 3171, 3221
TseI GCWGC 3 cut(s) 135, 933, 4054
Tsp45I GTSAC 3 cut(s) 187, 3171, 3221
TspGWI ACGGA 3 cut(s) 571, 3385, 4286
Van91I CCANNNNNTGG 1 cut(s) 2201
Vha464I CTTAAG 2 cut(s) 2737, 2797
VneI GTGCAC 1 cut(s) 2100
VpaK11BI GGWCC 5 cut(s) 383, 1111, 1157, 1820, 3104
VspI ATTAAT 2 cut(s) 755, 1464
XbaI TCTAGA 1 cut(s) 2315
XceI RCATGY 6 cut(s) 1533, 2026, 2077, 3146, 4153, 4354
XcmI CCANNNNNNNNNTGG 2 cut(s) 1721, 3820
XhoI CTCGAG 3 cut(s) 941, 2867, 4133
XmiI GTMKAC 3 cut(s) 2117, 2893, 3677
XmnI GAANNNNTTC 6 cut(s) 1260, 1314, 1698, 2981, 4247, 4580
ZraI GACGTC 1 cut(s) 3628
Zsp2I ATGCAT 5 cut(s) 497, 1668, 2028, 4224, 4590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.