RchiOBHm_Chr7g0240591

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000129
Physical Location & Seq
Forward (+)
66545037 .. 66547265
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21562

Sequence Viewer

Length: 774 bp
ATGGTGGTCCAGCAATGTGGAATTCGTCTAGTCTATGAGCAAGATGCTGGATGGCCTTACAGAATAGTCGGGGGCGATGATCCTATTTGTCTGAATAAAGTGAAGGACGACGCCTCTGTATTGGAGTCTGGCTGGCTTAGTCAATCTTTGGAATGGGAGAAATTCATTCCACCCTTGGAAGAAGAATCCACACTTGTACTGAGAAAGAGCCTCGAGTCTGTCCTTCCAAGATTTCTTGAGGTACTAAACTGTTACTCTGCAAAGTACGAATTTAACCTCAGAGGAAGCCGAGGGTGGTTTCATGAGTTGTTTATCCCTATTAATACGAGGTCAAATGAGACCAAAGTGTCAATCAAGCTGCCTCAAAATCTACACAAGAGCAAGAAGTGGATGGGATTTGCAATATTAGCATCACTTGCAGAGGAAGTGGGGCAGACAACGAAAGAGGACAGTTATTGTGTATCTGTTAGACTAGGAACTGGGGATAAATTTGTTAAGGGTCTGGCTCCAGAACTTAAGCACGTCAAGCCATTGTTAGAAGAACATCATCAACTGTTGGTTATTTACGTACCGCGGGCACAGATTCCTGAAATTTTGTTCACTCAGACATTGACAACTGCAATGGACTTTTACATCAGGGTCAATAGCCCTCATGTAAAGGTTCAAAGAGGTTCCGTGTTGTGTACCAGGAAGATATACAAGGGTTTGCTGATACAATTATCCAGTGCATGCAGAGAGAAGAGTCTCTTGGATCTTACGAGAAGTGGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

257

Amino Acids

29.34

Weight (kDa)

8.65

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
AccII CGCG 1 cut(s) 574
AciI CCGC 2 cut(s) 572, 574
AclWI GGATC 2 cut(s) 74, 759
AcsI RAATTY 5 cut(s) 21, 161, 269, 488, 591
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 5 cut(s) 198, 243, 266, 570, 685
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 1 cut(s) 665
AjiI CACGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 686
AjuI GAANNNNNNNTTGG 2 cut(s) 731, 763
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
Alw26I GTCTC 2 cut(s) 332, 749
AlwI GGATC 2 cut(s) 74, 759
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 5 cut(s) 21, 161, 269, 488, 591
AseI ATTAAT 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 580
BbvI GCAGC 1 cut(s) 345
BccI CCATC 2 cut(s) 45, 385
BciT130I CCWGG 1 cut(s) 688
BcoDI GTCTC 2 cut(s) 332, 749
BfaI CTAG 2 cut(s) 29, 473
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 688
Bme18I GGWCC 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 507, 673
BmrFI CCNGG 1 cut(s) 688
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 34, 419
BmuI ACTGGG 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 568
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 174, 289, 572
Bse1I ACTGG 2 cut(s) 484, 723
Bse3DI GCAATG 2 cut(s) 20, 627
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 3 cut(s) 174, 289, 572
BseGI GGATG 2 cut(s) 56, 396
BseMI GCAATG 2 cut(s) 20, 627
BseMII CTCAG 3 cut(s) 191, 292, 617
BseNI ACTGG 2 cut(s) 484, 723
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 574
BshFI GGCC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 332, 749
BsnI GGCC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 2 cut(s) 79, 751
BspACI CCGC 2 cut(s) 572, 574
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 3 cut(s) 192, 291, 616
BspFNI CGCG 1 cut(s) 574
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 507, 673
BspPI GGATC 2 cut(s) 74, 759
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 2 cut(s) 20, 627
BsrI ACTGG 2 cut(s) 484, 723
BssECI CCNNGG 3 cut(s) 174, 289, 572
BssMI GATC 2 cut(s) 79, 751
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 688
Bst4CI ACNGT 3 cut(s) 251, 452, 555
Bst6I CTCTTC 1 cut(s) 734
BstACI GRCGYC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 568
BstC8I GCNNGC 3 cut(s) 134, 576, 730
BstDEI CTNAG 4 cut(s) 137, 200, 278, 603
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 2 cut(s) 56, 396
BstFNI CGCG 1 cut(s) 574
BstKTI GATC 2 cut(s) 82, 754
BstMAI GTCTC 2 cut(s) 332, 749
BstMBI GATC 2 cut(s) 79, 751
BstMWI GCNNNNNNNGC 3 cut(s) 407, 416, 526
BstNI CCWGG 1 cut(s) 688
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 1 cut(s) 686
BstSLI GKGCMC 1 cut(s) 580
BstSNI TACGTA 1 cut(s) 568
BstUI CGCG 1 cut(s) 574
BstV1I GCAGC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 572
BtgZI GCGATG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 523
BtsCI GGATG 2 cut(s) 56, 396
BtsIMutI CAGTG 1 cut(s) 730
Cac8I GCNNGC 3 cut(s) 134, 576, 730
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 7
Cfr42I CCGCGG 1 cut(s) 575
CseI GACGC 1 cut(s) 119
Csp6I GTAC 5 cut(s) 197, 242, 265, 569, 684
CviAII CATG 3 cut(s) 302, 653, 729
CviJI RGCY 9 cut(s) 55, 132, 136, 210, 288, 358, 506, 529, 648
CviKI_1 RGCY 9 cut(s) 55, 132, 136, 210, 288, 358, 506, 529, 648
CviQI GTAC 5 cut(s) 197, 242, 265, 569, 684
DdeI CTNAG 4 cut(s) 137, 200, 278, 603
DpnI GATC 2 cut(s) 81, 753
DpnII GATC 2 cut(s) 79, 751
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
Eco105I TACGTA 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 305, 656, 732
FaiI YATR 5 cut(s) 36, 303, 654, 697, 730
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FatI CATG 3 cut(s) 301, 652, 728
FauI CCCGC 1 cut(s) 567
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 2 cut(s) 63, 403
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 2 cut(s) 29, 473
GluI GCNGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 55
HgaI GACGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 3 cut(s) 305, 656, 732
HinfI GANTC 5 cut(s) 125, 185, 215, 583, 742
Hpy166II GTNNAC 2 cut(s) 600, 684
Hpy188I TCNGA 3 cut(s) 93, 281, 606
Hpy188III TCNNGA 4 cut(s) 236, 302, 509, 587
Hpy8I GTNNAC 2 cut(s) 600, 684
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 97, 233
HpyCH4III ACNGT 3 cut(s) 251, 452, 555
HpyCH4IV ACGT 2 cut(s) 522, 567
HpyCH4V TGCA 6 cut(s) 260, 401, 419, 620, 728, 732
HpyF10VI GCNNNNNNNGC 3 cut(s) 407, 416, 526
HpyF3I CTNAG 4 cut(s) 137, 200, 278, 603
HpySE526I ACGT 2 cut(s) 522, 567
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 3 cut(s) 305, 656, 732
KspI CCGCGG 1 cut(s) 575
Kzo9I GATC 2 cut(s) 79, 751
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 2 cut(s) 34, 419
MaeI CTAG 2 cut(s) 29, 473
MaeII ACGT 2 cut(s) 522, 567
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 81, 753
MboI GATC 2 cut(s) 79, 751
MboII GAAGA 5 cut(s) 191, 194, 551, 703, 751
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 6 cut(s) 21, 161, 269, 488, 591, 716
MlyI GAGTC 3 cut(s) 134, 224, 751
MseI TTAA 4 cut(s) 273, 321, 495, 516
MspA1I CMGCKG 1 cut(s) 574
MspCI CTTAAG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 688
MvaI CCWGG 1 cut(s) 688
MvnI CGCG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 407, 416, 526
NdeII GATC 2 cut(s) 79, 751
NlaIII CATG 3 cut(s) 305, 656, 732
NlaIV GGNNCC 2 cut(s) 507, 673
NmeAIII GCCGAG 1 cut(s) 314
NspI RCATGY 1 cut(s) 732
PaeI GCATGC 1 cut(s) 732
PaeR7I CTCGAG 1 cut(s) 212
PagI TCATGA 1 cut(s) 301
PfeI GAWTC 2 cut(s) 185, 583
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 3 cut(s) 133, 223, 750
PpsI GAGTC 3 cut(s) 133, 223, 750
Ppu21I YACGTR 1 cut(s) 568
PshBI ATTAAT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 686
PspGI CCWGG 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 507, 673
PspPI GGNCC 1 cut(s) 7
PspXI VCTCGAGB 1 cut(s) 212
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 5 cut(s) 198, 243, 266, 570, 685
RsaNI GTAC 5 cut(s) 197, 242, 265, 569, 684
SacII CCGCGG 1 cut(s) 575
SaqAI TTAA 4 cut(s) 273, 321, 495, 516
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 2 cut(s) 79, 751
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 3 cut(s) 134, 224, 751
ScrFI CCNGG 1 cut(s) 688
SduI GDGCHC 1 cut(s) 580
SetI ASST 8 cut(s) 243, 279, 332, 360, 525, 570, 663, 673
SfaNI GCATC 2 cut(s) 34, 419
Sfr274I CTCGAG 1 cut(s) 212
Sfr303I CCGCGG 1 cut(s) 575
SgrBI CCGCGG 1 cut(s) 575
SinI GGWCC 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 3 cut(s) 212, 236, 515
SmoI CTYRAG 3 cut(s) 212, 236, 515
SnaBI TACGTA 1 cut(s) 568
SphI GCATGC 1 cut(s) 732
Sse9I AATT 6 cut(s) 21, 161, 269, 488, 591, 716
SsiI CCGC 2 cut(s) 572, 574
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 29, 473
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 251, 452, 555
TaiI ACGT 2 cut(s) 525, 570
TaqI TCGA 1 cut(s) 213
TasI AATT 6 cut(s) 21, 161, 269, 488, 591, 716
TatI WGTACW 1 cut(s) 196
TfiI GAWTC 2 cut(s) 185, 583
Tru1I TTAA 4 cut(s) 273, 321, 495, 516
Tru9I TTAA 4 cut(s) 273, 321, 495, 516
TscAI CASTG 1 cut(s) 730
TseI GCWGC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 154, 290
TspGWI ACGGA 1 cut(s) 664
TspRI CASTG 1 cut(s) 730
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 7
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 5 cut(s) 21, 161, 269, 488, 591
XceI RCATGY 1 cut(s) 732
XhoI CTCGAG 1 cut(s) 212
XspI CTAG 2 cut(s) 29, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.