Rmu_sc0038364.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038364.1
OG0000129
Physical Location & Seq
Forward (+)
5 .. 454
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038364.1_g000001.1.cds

Sequence Viewer

Length: 450 bp
atgcctttcatcaaccaaggcaactctgcagaaatccaactgcctctgaatgtgttcaatgatgataattggttgggttttgccgtatgttctcaattgtcccacgaccaatatccaaacatcagtcttggcagtactgctgctgattcagaggaggttatgcttatttgctgtctggcctctgatgttgcttgggagggcttatttgattacaactttgaattacgtttaaagattcaagagccatcggaatacgatgcgacttggttcttttatataccgcgcactaaagttcgtagtaatgtttggagacaatgcaaattggccaggataactatgttgttgtctagtccaagctcaggagtagtgcatagttgtgcccttcgtctactatttaaggaggacgttgaacgtcttgtaaaaacactagcccacgcggaattaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

149

Amino Acids

16.95

Weight (kDa)

4.96

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 388
AccII CGCG 2 cut(s) 283, 437
AciI CCGC 2 cut(s) 281, 437
AcoI YGGCCR 1 cut(s) 324
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 4 cut(s) 58, 221, 239, 410
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 1 cut(s) 357
AluI AGCT 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 304
AoxI GGCC 2 cut(s) 177, 324
ApeKI GCWGC 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 326
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 348, 428
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 358
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 2 cut(s) 283, 437
BshFI GGCC 2 cut(s) 179, 326
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 179, 326
Bsp1286I GDGCHC 1 cut(s) 382
BspACI CCGC 2 cut(s) 281, 437
BspANI GGCC 2 cut(s) 179, 326
BspCNI CTCAG 1 cut(s) 371
BspFNI CGCG 2 cut(s) 283, 437
BspMAI CTGCAG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 358
BstFNI CGCG 2 cut(s) 283, 437
BstHHI GCGC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 304
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 2 cut(s) 283, 437
BstV1I GCAGC 1 cut(s) 127
BsuRI GGCC 2 cut(s) 179, 326
CfoI GCGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 135
CviJI RGCY 6 cut(s) 179, 201, 244, 326, 357, 431
CviKI_1 RGCY 6 cut(s) 179, 201, 244, 326, 357, 431
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 358
DraI TTTAAA 1 cut(s) 231
EaeI YGGCCR 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaiI YATR 6 cut(s) 88, 161, 276, 278, 338, 372
FaqI GGGAC 1 cut(s) 85
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 348, 428
GlaI GCGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 179, 326
HhaI GCGC 1 cut(s) 285
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 2 cut(s) 146, 235
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 4 cut(s) 48, 151, 184, 250
Hpy188III TCNNGA 2 cut(s) 239, 360
Hpy8I GTNNAC 1 cut(s) 389
HpyAV CCTTC 1 cut(s) 392
HpyCH4IV ACGT 3 cut(s) 226, 405, 412
HpyCH4V TGCA 3 cut(s) 29, 318, 370
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 3 cut(s) 226, 405, 412
HspAI GCGC 1 cut(s) 283
LpnPI CCDG 4 cut(s) 161, 313, 340, 345
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 247
MaeI CTAG 2 cut(s) 348, 428
MaeII ACGT 3 cut(s) 226, 405, 412
MfeI CAATTG 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 382
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 5 cut(s) 67, 95, 221, 320, 440
MluNI TGGCCA 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 6 cut(s) 54, 145, 148, 190, 190, 394
Mox20I TGGCCA 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 53
MscI TGGCCA 1 cut(s) 326
MseI TTAA 2 cut(s) 230, 396
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 2 cut(s) 283, 437
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 146, 235
PkrI GCNGC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PstI CTGCAG 1 cut(s) 31
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 230, 396
SatI GCNGC 1 cut(s) 141
ScaI AGTACT 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 382
SetI ASST 6 cut(s) 159, 229, 359, 408, 415, 448
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 5 cut(s) 67, 95, 221, 320, 440
SsiI CCGC 2 cut(s) 281, 437
SspMI CTAG 2 cut(s) 348, 428
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 16
TaiI ACGT 3 cut(s) 229, 408, 415
TasI AATT 5 cut(s) 67, 95, 221, 320, 440
TatI WGTACW 1 cut(s) 134
TfiI GAWTC 2 cut(s) 146, 235
Tru1I TTAA 2 cut(s) 230, 396
Tru9I TTAA 2 cut(s) 230, 396
TseI GCWGC 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 2 cut(s) 348, 428
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.