Rmu_co8275571.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8275571.1
OG0000129
Physical Location & Seq
Forward (+)
1 .. 681
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8275571.1_g000001.1.cds

Sequence Viewer

Length: 558 bp
gcgctaaaccgttattctgcaacgtacaaatttaacctcagaggaagcccagggtggtttgggtcgatttgccctgatatgatgaggtcaaatttggccagagtgtcaattgagctgcctcaaaatctacacaagagcaagaagtggatgggatttgcaatatacttatcacttgtagaggaagcggggcagacaatgaacaaagaggacttctatttggtattggttacactaacaactggggatgaatctgcaggtagtacggtgtcccaagaacttatgcacgtcatgccattgtcagaagaacatcatcaacttttggttatttacatgccgcgggcacagattcccgaagcgttgttcactcagacattaacaactgcaatggacttttgcatcactatcgttagccctcatgtaaaggttcaaagaagtgggttccgtattgtgtaccaggaagatatacaaggaatggatacagttgatgcaactgcaaggtgccaccatagagagaatgacagaacgggattccagaaccccacgggaaaaacaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

185

Amino Acids

20.94

Weight (kDa)

6.4

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 498
AccII CGCG 1 cut(s) 337
AciI CCGC 3 cut(s) 185, 335, 337
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 29, 91
AfaI GTAC 3 cut(s) 26, 262, 452
AgsI TTSAA 1 cut(s) 428
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 2 cut(s) 49, 453
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 29, 91
AspLEI GCGC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 98
BanI GGYRCC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 2 cut(s) 51, 455
BciVI GTATCC 1 cut(s) 469
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 245
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 2 cut(s) 116, 335
BlsI GCNGC 2 cut(s) 117, 336
Bme1390I CCNGG 2 cut(s) 51, 455
BmgBI CACGTC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 440, 500
BmrFI CCNGG 2 cut(s) 51, 455
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 2 cut(s) 405, 475
BmuI ACTGGG 1 cut(s) 249
BsaJI CCNNGG 4 cut(s) 49, 50, 335, 540
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 2 cut(s) 51, 455
BseDI CCNNGG 4 cut(s) 49, 50, 335, 540
BseGI GGATG 2 cut(s) 153, 250
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 52, 380
BseNI ACTGG 1 cut(s) 244
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 498
BslFI GGGAC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 343
BspACI CCGC 3 cut(s) 185, 335, 337
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 51, 379
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 440, 500
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 4 cut(s) 49, 50, 335, 540
Bst2UI CCWGG 2 cut(s) 51, 455
Bst4CI ACNGT 3 cut(s) 11, 265, 481
BstAPI GCANNNNNTGC 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 38, 366
BstDSI CCRYGG 2 cut(s) 335, 540
BstF5I GGATG 2 cut(s) 153, 250
BstFNI CGCG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 2 cut(s) 51, 455
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 49, 453
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 343
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 102
BsuI GTATCC 1 cut(s) 469
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 2 cut(s) 335, 540
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 2 cut(s) 153, 250
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 338
Csp6I GTAC 3 cut(s) 25, 261, 451
CviAII CATG 3 cut(s) 289, 331, 416
CviJI RGCY 4 cut(s) 48, 98, 115, 411
CviKI_1 RGCY 4 cut(s) 48, 98, 115, 411
CviQI GTAC 3 cut(s) 25, 261, 451
DdeI CTNAG 2 cut(s) 38, 366
EaeI YGGCCR 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 49, 453
FaeI CATG 3 cut(s) 292, 334, 419
FaiI YATR 8 cut(s) 80, 163, 281, 290, 332, 417, 464, 507
FaqI GGGAC 1 cut(s) 253
FatI CATG 3 cut(s) 288, 330, 415
FauI CCCGC 2 cut(s) 178, 330
Fnu4HI GCNGC 2 cut(s) 116, 335
FokI GGATG 2 cut(s) 160, 257
Fsp4HI GCNGC 2 cut(s) 116, 335
GlaI GCGC 1 cut(s) 3
GluI GCNGC 2 cut(s) 116, 335
HaeIII GGCC 1 cut(s) 98
HhaI GCGC 1 cut(s) 4
Hin1II CATG 3 cut(s) 292, 334, 419
Hin6I GCGC 1 cut(s) 2
HinP1I GCGC 1 cut(s) 2
HinfI GANTC 3 cut(s) 248, 346, 528
Hpy166II GTNNAC 2 cut(s) 363, 451
Hpy188I TCNGA 3 cut(s) 41, 301, 369
Hpy188III TCNNGA 2 cut(s) 350, 532
Hpy8I GTNNAC 2 cut(s) 363, 451
HpyCH4III ACNGT 3 cut(s) 11, 265, 481
HpyCH4IV ACGT 2 cut(s) 23, 285
HpyCH4V TGCA 8 cut(s) 20, 158, 254, 283, 383, 396, 488, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 2 cut(s) 38, 366
HpySE526I ACGT 2 cut(s) 23, 285
Hsp92II CATG 3 cut(s) 292, 334, 419
HspAI GCGC 1 cut(s) 2
KspI CCGCGG 1 cut(s) 338
LpnPI CCDG 9 cut(s) 36, 63, 87, 112, 225, 240, 440, 467, 545
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 2 cut(s) 405, 475
MaeII ACGT 2 cut(s) 23, 285
MaeIII GTNAC 1 cut(s) 226
MboII GAAGA 2 cut(s) 314, 470
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 4 cut(s) 29, 91, 108, 552
MluNI TGGCCA 1 cut(s) 98
MnlI CCTC 7 cut(s) 35, 47, 78, 129, 172, 199, 423
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
MseI TTAA 2 cut(s) 33, 374
Msp20I TGGCCA 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 337
MspR9I CCNGG 2 cut(s) 51, 455
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 2 cut(s) 51, 455
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 289
NlaIII CATG 3 cut(s) 292, 334, 419
NlaIV GGNNCC 2 cut(s) 440, 500
NspI RCATGY 1 cut(s) 334
PasI CCCWGGG 1 cut(s) 50
PfeI GAWTC 3 cut(s) 248, 346, 528
PkrI GCNGC 2 cut(s) 117, 336
Psp6I CCWGG 2 cut(s) 49, 453
PspGI CCWGG 2 cut(s) 49, 453
PspN4I GGNNCC 2 cut(s) 440, 500
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 3 cut(s) 26, 262, 452
RsaNI GTAC 3 cut(s) 25, 261, 451
SacII CCGCGG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 33, 374
SatI GCNGC 2 cut(s) 116, 335
ScrFI CCNGG 2 cut(s) 51, 455
SduI GDGCHC 1 cut(s) 343
SetI ASST 8 cut(s) 26, 39, 89, 117, 259, 288, 426, 500
SfaNI GCATC 2 cut(s) 405, 475
SfcI CTRYAG 1 cut(s) 252
Sfr303I CCGCGG 1 cut(s) 338
SgrBI CCGCGG 1 cut(s) 338
Sse9I AATT 4 cut(s) 29, 91, 108, 552
SsiI CCGC 3 cut(s) 185, 335, 337
StyD4I CCNGG 2 cut(s) 49, 453
TaaI ACNGT 3 cut(s) 11, 265, 481
TaiI ACGT 2 cut(s) 26, 288
TaqI TCGA 1 cut(s) 65
TasI AATT 4 cut(s) 29, 91, 108, 552
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 3 cut(s) 248, 346, 528
Tru1I TTAA 2 cut(s) 33, 374
Tru9I TTAA 2 cut(s) 33, 374
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 212, 261
TspGWI ACGGA 1 cut(s) 431
XapI RAATTY 2 cut(s) 29, 91
XceI RCATGY 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.