Prupe.8G005500_v2.0.a1

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000129
Physical Location & Seq
Forward (+)
429494 .. 434409
4916 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G005500.2

Sequence Viewer

Length: 3696 bp
ATGATCACCCAAATAGATATTCCTTCTTCCTCTTCCTCTTCTTCTCCTCCGACCCCTCGATGGACATACGATGTGTTCCTCAGTTTCAGAGGAGAAGACACCCGCACAAATTTCACAGACTTTCTGTATACTTCTCTGATACAGAAAGGAATATTCACATTTAGAGATGATGAAGAACTTGAGAGGGGAAAGCCCATAGCTCCAAAACTCTCGAAGGCAATCGAAGCATCAAGATATGTAATTGTCATTCTTTCACCAAACTATGTCAATTCTACATGGTGCTTGGATGAGCTTGTAAAGGCTGTTGAATGCATGAACCTGATGGGACAAACAATACTCCCAGTTTTCTATCATGTGGATCCATCCGAGGTACGAAAACAGAAAGCAGATTTTGGGGAAGCCTTCCCTAAGCATGAAGAAGCCTTTAAAGACAATGAACGGAATGTGCAAAGATGGAGAGATGCACTTAATCAAGTTTCCAATCTCTCTGGATGGCATTTACACGATGGTTATGAATCAAAAGTTATTCAAGATATCGTAGGAAAGATTTTCACTGAATTAAATCAAACAATCTCAAGTGTATCCACAGATTTAGTTGGGATGGATTCTCGTGTGAAAGAAATGCTTTCTTGCTTAGACATGGGGCTGCATAAAGTTTGTGCCATAGGGATTTTGGGCATTGGGGGAATAGGTAAGACAACTGTTGCCAGAGTTGTTTACGAGAGGATATGTGCTCAATTCGAAGCTTGCAGCTTTCTTGCCAATGTTAGAGAGGTAACTGAAAAACAAGGCCTAGTTGATTTGCAAAAGCAACTTCTGTCAGATATCTTGCTGGAAAGTAATGTAAATGTACATAATATTTATAAGGGGATCAGTTTAATAAGGCAGAGACTACATGCTATAACGGTTCTTATCATTCTTGATGATGTCGATACGCTGGAACAACTGGAAGCATTATGTCATCATAGTTGGTTTGGTTCAGGGAGTAGAATTATCATAACATCAAGAGATGAACATTTGTTGAGCACATTTGGAGTGAATAAAATGTATAAGGTTAAGGAATTAAATGATTCTGAAGCTCTTAAACTCTTTAGTCGGAAAGCCTTTAAGAAAGAACAAGTTGGAGAAGGTTATCTCAAGCTGTCTAAGAATGTCGTTGAATACGCCAGTGGCCTTCCATTGGCTCTTACAGTTACGGGTTCATTCCTTTTCGGTAAAAGCGTTAAAGAATGGTCCAGTGCATTGGATAGACTAAAAGAAAATCCCGAGAAAGGAATTATTGATGTGCTTAAAGTAAGCTTTGACGCATTACAAGTAACAGAGAAAAAGGTATTTCTGGACATTGCATGTTTTTTTAAAGGGGAGGACAAAGATTGTGTAGCAAAAATACTAGAAAGTGGTTGTGGATACAGTCCAGACATTGATATAAAAGTTCTCATAGATAAATCTCTAGTAACTCTATTTGGAAAAAAATTGTGCATGCATGATTTGATACAAGAATTGGGTTGGGAAATTGTTCGTCAAGAATGTCGTGGAGATCCAGGAAAACGTAGCAGGTTGTGGCTTCTCAAGGATATCATCCCCGTACTTGCAAAAAATAAGGGAACAGATACAATTGAAGGTATATTCCTCAACTTGCCGAAACAAGAGAAGATTCACTTGAATGCTGATTCCTTCTCAAAGATGTCCAACCTAAGATTGCTCAGAATTTGTAATGTGGCCTCTCCTGGATCCGTTGAGTATCTTTCTAATGAGTTACAACTTTTGGAATGGCATGCATGTCCTTTAAATTATTTGCCGTCAAACTTTCAATCAGATAAGCTTGTTGAACTCAAAATGCATTTGAGCCGTGTCAAACAACTGTGGAATGGAAATGAAAGCTGGAGCATGCTAAAGTGCATCGATCTGAGTGATTCCCAATACTTGATCAAAACCCCAAACTTCACTAAGGCTCCAAATATTGAGATGTTGGTGCTCCAAGGCTGTTCAAGATTGGTTGATGTTCACCCGTCCATGGGAATTCTCAAACAGCTTATCTTGCTGAATATGAGAAACTGCAAATCTGTAAAGATTCTTCCATCTTTCGTTAGTATGGAATCTCTTGAGAGTTTAAATCTGTCCGCCTGTTCAAGACTCAAGAAGTTTCCTGAGATAGAAGGGAATATGCAAAGCCTGTTGGAGCTTCATCTAGATGGGACAGCCATAGAAGAATTACCTCCATCAATTGAACATTTGACCAGTCTTAAATTGTTGAATCTAGGAGACTGCAAAAACCTTTTTCATCTTCCGAGTACCATTCAACATTTGACATCTCTGAAAACTCTCATTCTAACTGGTTGCTCAGAACTTAATGACATACATGAGAATCTGAATTGTGTGGAATGTCTGGAGGAGCTTGATATAAGTGGAACTGCTATAAGAGAATCGTCGTTCATTGTAGGTTTGAAGAATCTAAAGTCTCTATCTTTTCGAGGTTGTAAAAATCGGCCTTCAAGATCATGGCATTCGTTCTTTAATTATTGGTGGCGGGGTAGAAACGGTCATGTTCCTGGTAGTTTATTGTTGCCTACTTCACTTTCAGGTTTAAGTTCTTTGACAAACCTAAACTTAAGTGATTGTAATCTGATGGATGGAGAAATTCCCAATGATCTTGGTTCCTTGTTCTCCTTAAAAACATTAGATTTAAGGCAGAATAATTTTGTTGGCTTACCTGAAACCATCTCTCAACTCTCCAAGCTTGAATTTATCAATGTGAGCAAGTGTAGCAGGCTTCAATTGCTGCCTAAGGAGCTTCCATTAAGTCTTCAACGTGTGAATATGGAAGATTGTGCTTCACTGATAGACTTCCCAAATCAAGTCAAAATATTTGCTTTACCTCTCTTGGGAAAGAATTCCCGCATTTCATCCAAGTTTCAAGATTTCAATTCTGAGAAACAAGAATGGAGACCAGTTGACGATTTGCAAATTCAATTGCTTCAAAGACAGCTTGAAGAATTGAACTATAGATTTACTCCCTTACAGGCAGTTAGTTATCAAACTGAAATTCCAGAGTGGTTCAGCCATATGGTTACAGAGTGTTCTATTGCAATCCCTCCATCTCCAGATTTGAGTGATTATAGAAAGTTGATGGGGGTTGCTCTATGTGCTGTTTTCTCAGTCAAGGGACATCCTGCTGTCTCTTGCATTGGATCGGATTCAGGAACATCTTACTTTTATCAATGCAAATTGCCAATTCATAAATTTTTTGGATCTAAACCATTTATCCTTCATGGCAAGCTACATCGCAAATTTGGAACTGATGATTTTCTTTGGGTTTTCTATTTACCTCGTCGTTTCTTTCCAAATGTGTTAAGTGATTCAGGTGTTATGGGTGCTCTATTTGAAACCAACAACCCGTGCATGGAAGTCAAGAAATGTGGGGTTCGTCTAGTGTATGAGCAAGATGTTGCAGGGTTTATCCAAACATTTCTACAGTGTGTTACTACTGGACCCCAGCCACATCAAATTGTCCCTTATGATGACTACAAGATAATTGAAGAATTTGATGGAGATGGCTTTAAAACTGGATGGTTTAGTATAGTGGATAACGTTTGGAGATGGGAGAAATTAATTCCAGCTTATGAAGGTGGTGTTCGATTACCATTTTGGTGTAACGTCTGGATAAGGTGTAGGACTGGACTTGCCTTTCTGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1232

Amino Acids

139.33

Weight (kDa)

6.44

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 864
Acc36I ACCTGC 1 cut(s) 1545
AccI GTMKAC 1 cut(s) 128
AciI CCGC 4 cut(s) 103, 2121, 2527, 2896
AclI AACGTT 1 cut(s) 3588
AclWI GGATC 8 cut(s) 353, 366, 878, 1532, 1725, 1738, 3196, 3256
AcuI CTGAAG 1 cut(s) 1095
AfaI GTAC 4 cut(s) 372, 852, 1587, 2293
AfiI CCNNNNNNNGG 7 cut(s) 60, 1180, 1271, 2014, 2015, 2882, 3400
AflII CTTAAG 1 cut(s) 2608
AflIII ACRYGT 1 cut(s) 2809
AjnI CCWGG 3 cut(s) 1540, 1726, 2548
AjuI GAANNNNNNNTTGG 1 cut(s) 35
Alw21I GWGCWC 4 cut(s) 736, 1028, 1977, 3376
Alw26I GTCTC 5 cut(s) 883, 2256, 2463, 2938, 3181
AlwI GGATC 8 cut(s) 353, 366, 878, 1532, 1725, 1738, 3196, 3256
Ama87I CYCGRG 1 cut(s) 1265
AoxI GGCC 4 cut(s) 790, 1171, 1719, 2486
ApeKI GCWGC 3 cut(s) 646, 750, 2779
AseI ATTAAT 1 cut(s) 3608
Asp700I GAANNNNTTC 2 cut(s) 1515, 2890
AspS9I GGNCC 2 cut(s) 1233, 3488
AsuHPI GGTGA 2 cut(s) 246, 1997
AsuII TTCGAA 1 cut(s) 741
AvaI CYCGRG 1 cut(s) 1265
AvaII GGWCC 2 cut(s) 1233, 3488
AxyI CCTNAGG 1 cut(s) 2784
BamHI GGATCC 2 cut(s) 358, 1730
BarI GAAGNNNNNNTAC 2 cut(s) 2058, 2090
BauI CACGAG 1 cut(s) 609
BbsI GAAGAC 2 cut(s) 102, 2795
Bbv12I GWGCWC 4 cut(s) 736, 1028, 1977, 3376
BbvI GCAGC 3 cut(s) 633, 762, 2766
BceAI ACGGC 2 cut(s) 1783, 1833
BciT130I CCWGG 3 cut(s) 1542, 1728, 2550
BciVI GTATCC 2 cut(s) 592, 1400
BclI TGATCA 2 cut(s) 3, 1926
BcoDI GTCTC 5 cut(s) 883, 2256, 2463, 2938, 3181
BfaI CTAG 6 cut(s) 794, 1391, 1451, 2189, 2258, 3428
BfmI CTRYAG 2 cut(s) 3001, 3470
BfrI CTTAAG 1 cut(s) 2608
BfuAI ACCTGC 1 cut(s) 1545
BfuI GTATCC 2 cut(s) 592, 1400
BglI GCCNNNNNGGC 1 cut(s) 3689
BisI GCNGC 3 cut(s) 647, 751, 2780
BlsI GCNGC 3 cut(s) 648, 752, 2781
Bme1390I CCNGG 3 cut(s) 1542, 1728, 2550
Bme18I GGWCC 2 cut(s) 1233, 3488
BmeT110I CYCGRG 1 cut(s) 1265
BmgT120I GGNCC 2 cut(s) 1233, 3488
BmiI GGNNCC 5 cut(s) 360, 1732, 1953, 2656, 3490
BmrFI CCNGG 3 cut(s) 1542, 1728, 2550
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 3 cut(s) 236, 451, 1908
BmuI ACTGGG 1 cut(s) 335
BpiI GAAGAC 2 cut(s) 102, 2795
BpmI CTGGAG 3 cut(s) 1903, 2408, 3084
Bpu10I CCTNAGC 1 cut(s) 408
Bpu14I TTCGAA 1 cut(s) 741
BpuEI CTTGAG 6 cut(s) 200, 559, 1121, 1553, 2120, 2123
Bsa29I ATCGAT 1 cut(s) 1902
BsaBI GATNNNNATC 1 cut(s) 2619
BsaI GGTCTC 1 cut(s) 2938
BsaJI CCNNGG 3 cut(s) 366, 1978, 2013
BsaXI ACNNNNNCTCC 2 cut(s) 1936, 1966
Bsc4I CCNNNNNNNGG 7 cut(s) 60, 1180, 1271, 2014, 2015, 2882, 3400
Bse21I CCTNAGG 1 cut(s) 2784
Bse3DI GCAATG 1 cut(s) 1341
Bse8I GATNNNNATC 1 cut(s) 2619
BseBI CCWGG 3 cut(s) 1542, 1728, 2550
BseCI ATCGAT 1 cut(s) 1902
BseDI CCNNGG 3 cut(s) 366, 1978, 2013
BseGI GGATG 9 cut(s) 292, 362, 497, 606, 1578, 2635, 2903, 3166, 3572
BseJI GATNNNNATC 1 cut(s) 2619
BseLI CCNNNNNNNGG 7 cut(s) 60, 1180, 1271, 2014, 2015, 2882, 3400
BseMI GCAATG 1 cut(s) 1341
BseMII CTCAG 7 cut(s) 94, 1717, 1898, 2139, 2355, 2919, 3168
BseRI GAGGAG 3 cut(s) 36, 105, 2405
BseXI GCAGC 3 cut(s) 633, 762, 2766
BseYI CCCAGC 1 cut(s) 3492
BshFI GGCC 4 cut(s) 792, 1173, 1721, 2488
BshVI ATCGAT 1 cut(s) 1902
BsiHKAI GWGCWC 4 cut(s) 736, 1028, 1977, 3376
BsiHKCI CYCGRG 1 cut(s) 1265
BslFI GGGAC 4 cut(s) 339, 2209, 3177, 3494
BslI CCNNNNNNNGG 7 cut(s) 60, 1180, 1271, 2014, 2015, 2882, 3400
BsmAI GTCTC 5 cut(s) 883, 2256, 2463, 2938, 3181
BsmFI GGGAC 4 cut(s) 339, 2209, 3177, 3494
BsmI GAATGC 3 cut(s) 314, 1669, 2503
BsnI GGCC 4 cut(s) 792, 1173, 1721, 2488
Bso31I GGTCTC 1 cut(s) 2938
BsoBI CYCGRG 1 cut(s) 1265
Bsp119I TTCGAA 1 cut(s) 741
Bsp1286I GDGCHC 4 cut(s) 736, 1028, 1977, 3376
Bsp1407I TGTACA 1 cut(s) 850
Bsp19I CCATGG 1 cut(s) 2013
BspACI CCGC 4 cut(s) 103, 2121, 2527, 2896
BspANI GGCC 4 cut(s) 792, 1173, 1721, 2488
BspCNI CTCAG 7 cut(s) 93, 1716, 1899, 2140, 2354, 2920, 3167
BspDI ATCGAT 1 cut(s) 1902
BspLI GGNNCC 5 cut(s) 360, 1732, 1953, 2656, 3490
BspMI ACCTGC 1 cut(s) 1545
BspPI GGATC 8 cut(s) 353, 366, 878, 1532, 1725, 1738, 3196, 3256
BspT104I TTCGAA 1 cut(s) 741
BspTI CTTAAG 1 cut(s) 2608
BspTNI GGTCTC 1 cut(s) 2938
BsrDI GCAATG 1 cut(s) 1341
BsrGI TGTACA 1 cut(s) 850
BssECI CCNNGG 3 cut(s) 366, 1978, 2013
BssNAI GTATAC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 2 cut(s) 1978, 2013
Bst1107I GTATAC 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 3 cut(s) 1542, 1728, 2550
Bst4CI ACNGT 7 cut(s) 703, 907, 1192, 1412, 1863, 2540, 3474
Bst6I CTCTTC 2 cut(s) 37, 43
BstAFI CTTAAG 1 cut(s) 2608
BstAUI TGTACA 1 cut(s) 850
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 6 cut(s) 748, 1481, 1776, 1889, 2768, 3275
BstDSI CCRYGG 1 cut(s) 2013
BstF5I GGATG 9 cut(s) 292, 362, 497, 606, 1578, 2635, 2903, 3166, 3572
BstMAI GTCTC 5 cut(s) 883, 2256, 2463, 2938, 3181
BstMWI GCNNNNNNNGC 7 cut(s) 224, 2038, 2763, 2776, 2788, 3143, 3689
BstNI CCWGG 3 cut(s) 1542, 1728, 2550
BstNSI RCATGY 6 cut(s) 899, 1350, 1483, 1778, 1782, 1891
BstSCI CCNGG 3 cut(s) 1540, 1726, 2548
BstSFI CTRYAG 2 cut(s) 3001, 3470
BstV1I GCAGC 3 cut(s) 633, 762, 2766
BstV2I GAAGAC 2 cut(s) 102, 2795
BstX2I RGATCY 4 cut(s) 358, 1537, 1730, 3248
BstXI CCANNNNNNTGG 1 cut(s) 1243
BstYI RGATCY 4 cut(s) 358, 1537, 1730, 3248
BstZ17I GTATAC 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 1902
Bsu36I CCTNAGG 1 cut(s) 2784
BsuI GTATCC 2 cut(s) 592, 1400
BsuRI GGCC 4 cut(s) 792, 1173, 1721, 2488
BsuTUI ATCGAT 1 cut(s) 1902
BtgI CCRYGG 1 cut(s) 2013
BtgZI GCGATG 1 cut(s) 3266
BtsCI GGATG 9 cut(s) 292, 362, 497, 606, 1578, 2635, 2903, 3166, 3572
BtsIMutI CAGTG 5 cut(s) 552, 1174, 1243, 2834, 3479
BveI ACCTGC 1 cut(s) 1545
Cac8I GCNNGC 6 cut(s) 748, 1481, 1776, 1889, 2768, 3275
Cfr13I GGNCC 2 cut(s) 1233, 3488
ClaI ATCGAT 1 cut(s) 1902
CseI GACGC 1 cut(s) 1313
Csp6I GTAC 4 cut(s) 371, 851, 1586, 2292
CspCI CAANNNNNGTGG 2 cut(s) 3397, 3432
CviQI GTAC 4 cut(s) 371, 851, 1586, 2292
DraI TTTAAA 5 cut(s) 427, 1357, 1788, 2112, 3559
Eam1104I CTCTTC 2 cut(s) 37, 43
EarI CTCTTC 2 cut(s) 37, 43
EciI GGCGGA 1 cut(s) 2110
Eco130I CCWWGG 2 cut(s) 1978, 2013
Eco147I AGGCCT 1 cut(s) 792
Eco31I GGTCTC 1 cut(s) 2938
Eco32I GATATC 3 cut(s) 535, 826, 1576
Eco47I GGWCC 2 cut(s) 1233, 3488
Eco57I CTGAAG 1 cut(s) 1095
Eco81I CCTNAGG 1 cut(s) 2784
Eco88I CYCGRG 1 cut(s) 1265
EcoRI GAATTC 2 cut(s) 2019, 2890
EcoRII CCWGG 3 cut(s) 1540, 1726, 2548
EcoRV GATATC 3 cut(s) 535, 826, 1576
EcoT14I CCWWGG 2 cut(s) 1978, 2013
EcoT22I ATGCAT 4 cut(s) 314, 1485, 1780, 1842
ErhI CCWWGG 2 cut(s) 1978, 2013
FalI AAGNNNNNCTT 4 cut(s) 609, 641, 1643, 1675
FaqI GGGAC 4 cut(s) 339, 2209, 3177, 3494
FauI CCCGC 3 cut(s) 110, 2520, 2903
FauNDI CATATG 1 cut(s) 3063
FbaI TGATCA 2 cut(s) 3, 1926
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 647, 751, 2780
FokI GGATG 9 cut(s) 299, 349, 504, 613, 1565, 2642, 2890, 3153, 3579
Fsp4HI GCNGC 3 cut(s) 647, 751, 2780
FspBI CTAG 6 cut(s) 794, 1391, 1451, 2189, 2258, 3428
GluI GCNGC 3 cut(s) 647, 751, 2780
GsaI CCCAGC 1 cut(s) 3496
GsuI CTGGAG 3 cut(s) 1903, 2408, 3084
HaeIII GGCC 4 cut(s) 792, 1173, 1721, 2488
HgaI GACGC 1 cut(s) 1313
HincII GTYRAC 1 cut(s) 2953
HindII GTYRAC 1 cut(s) 2953
HindIII AAGCTT 4 cut(s) 744, 1297, 1820, 2735
HphI GGTGA 2 cut(s) 246, 1997
Hpy166II GTNNAC 4 cut(s) 129, 718, 2005, 2953
Hpy8I GTNNAC 4 cut(s) 129, 718, 2005, 2953
Hpy99I CGWCG 2 cut(s) 2431, 3333
HpyCH4III ACNGT 7 cut(s) 703, 907, 1192, 1412, 1863, 2540, 3474
HpyCH4IV ACGT 4 cut(s) 1549, 2809, 3588, 3654
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 2038, 2763, 2776, 2788, 3143, 3689
HpySE526I ACGT 4 cut(s) 1549, 2809, 3588, 3654
Ksp22I TGATCA 2 cut(s) 3, 1926
LmnI GCTCC 7 cut(s) 205, 1884, 1957, 1980, 2179, 2392, 2788
Lsp1109I GCAGC 3 cut(s) 633, 762, 2766
LweI GCATC 3 cut(s) 236, 451, 1908
MaeI CTAG 6 cut(s) 794, 1391, 1451, 2189, 2258, 3428
MaeII ACGT 4 cut(s) 1549, 2809, 3588, 3654
MaeIII GTNAC 8 cut(s) 775, 1192, 1315, 1453, 1755, 3067, 3478, 3650
MfeI CAATTG 4 cut(s) 1614, 2223, 2774, 2969
MflI RGATCY 4 cut(s) 358, 1537, 1730, 3248
MhlI GDGCHC 4 cut(s) 736, 1028, 1977, 3376
MlyI GAGTC 1 cut(s) 2127
MmeI TCCRAC 5 cut(s) 74, 1076, 1102, 1713, 2157
Mph1103I ATGCAT 4 cut(s) 314, 1485, 1780, 1842
MroXI GAANNNNTTC 2 cut(s) 1515, 2890
MslI CAYNNNNRTG 3 cut(s) 1662, 2190, 3646
MspCI CTTAAG 1 cut(s) 2608
MspR9I CCNGG 3 cut(s) 1542, 1728, 2550
MunI CAATTG 4 cut(s) 1614, 2223, 2774, 2969
Mva1269I GAATGC 3 cut(s) 314, 1669, 2503
MvaI CCWGG 3 cut(s) 1542, 1728, 2550
MwoI GCNNNNNNNGC 7 cut(s) 224, 2038, 2763, 2776, 2788, 3143, 3689
NcoI CCATGG 1 cut(s) 2013
NdeI CATATG 1 cut(s) 3063
NlaIV GGNNCC 5 cut(s) 360, 1732, 1953, 2656, 3490
NsiI ATGCAT 4 cut(s) 314, 1485, 1780, 1842
NspI RCATGY 6 cut(s) 899, 1350, 1483, 1778, 1782, 1891
NspV TTCGAA 1 cut(s) 741
PaeI GCATGC 3 cut(s) 1483, 1778, 1891
PceI AGGCCT 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 1218
PctI GAATGC 3 cut(s) 314, 1669, 2503
PdmI GAANNNNTTC 2 cut(s) 1515, 2890
PfoI TCCNGGA 2 cut(s) 1540, 1726
PkrI GCNGC 3 cut(s) 648, 752, 2781
PleI GAGTC 1 cut(s) 2127
PpsI GAGTC 1 cut(s) 2127
PshBI ATTAAT 1 cut(s) 3608
PsiI TTATAA 1 cut(s) 864
Psp1406I AACGTT 1 cut(s) 3588
Psp6I CCWGG 3 cut(s) 1540, 1726, 2548
PspFI CCCAGC 1 cut(s) 3492
PspGI CCWGG 3 cut(s) 1540, 1726, 2548
PspN4I GGNNCC 5 cut(s) 360, 1732, 1953, 2656, 3490
PspPI GGNCC 2 cut(s) 1233, 3488
PsuI RGATCY 4 cut(s) 358, 1537, 1730, 3248
RsaI GTAC 4 cut(s) 372, 852, 1587, 2293
RsaNI GTAC 4 cut(s) 371, 851, 1586, 2292
RseI CAYNNNNRTG 3 cut(s) 1662, 2190, 3646
SatI GCNGC 3 cut(s) 647, 751, 2780
Sau96I GGNCC 2 cut(s) 1233, 3488
SchI GAGTC 1 cut(s) 2127
ScrFI CCNGG 3 cut(s) 1542, 1728, 2550
SduI GDGCHC 4 cut(s) 736, 1028, 1977, 3376
SfaNI GCATC 3 cut(s) 236, 451, 1908
SfcI CTRYAG 2 cut(s) 3001, 3470
SfuI TTCGAA 1 cut(s) 741
SinI GGWCC 2 cut(s) 1233, 3488
SmiMI CAYNNNNRTG 3 cut(s) 1662, 2190, 3646
SmlI CTYRAG 7 cut(s) 179, 574, 1136, 1568, 2102, 2135, 2608
SmoI CTYRAG 7 cut(s) 179, 574, 1136, 1568, 2102, 2135, 2608
SphI GCATGC 3 cut(s) 1483, 1778, 1891
SseBI AGGCCT 1 cut(s) 792
SsiI CCGC 4 cut(s) 103, 2121, 2527, 2896
SspI AATATT 4 cut(s) 153, 859, 1960, 2865
SspMI CTAG 6 cut(s) 794, 1391, 1451, 2189, 2258, 3428
StuI AGGCCT 1 cut(s) 792
StyD4I CCNGG 3 cut(s) 1540, 1726, 2548
StyI CCWWGG 2 cut(s) 1978, 2013
TaaI ACNGT 7 cut(s) 703, 907, 1192, 1412, 1863, 2540, 3474
TaiI ACGT 4 cut(s) 1552, 2812, 3591, 3657
TaqI TCGA 8 cut(s) 58, 212, 222, 741, 930, 1902, 2470, 3634
TatI WGTACW 1 cut(s) 850
TscAI CASTG 5 cut(s) 559, 1174, 1243, 2841, 3479
TseI GCWGC 3 cut(s) 646, 750, 2779
TspGWI ACGGA 2 cut(s) 454, 1723
TspRI CASTG 5 cut(s) 559, 1174, 1243, 2841, 3479
Vha464I CTTAAG 1 cut(s) 2608
VpaK11BI GGWCC 2 cut(s) 1233, 3488
VspI ATTAAT 1 cut(s) 3608
XbaI TCTAGA 1 cut(s) 2188
XceI RCATGY 6 cut(s) 899, 1350, 1483, 1778, 1782, 1891
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 2 cut(s) 1515, 2890
XspI CTAG 6 cut(s) 794, 1391, 1451, 2189, 2258, 3428
Zsp2I ATGCAT 4 cut(s) 314, 1485, 1780, 1842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.