Rh2DG318800

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000129
Physical Location & Seq
Reverse (-)
39610041 .. 39610940
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG318800.1

Sequence Viewer

Length: 519 bp
ATGGACTGGTCTGACTCTCGTGTTGCTTATTGTGTCTTCAAGAGAGTTGAAATCTCCAAGTTGAAATTCTTCATGCCTTTCATCAATCAAGGCAACTCTTCAGAATTCCAACTGCCTCTGAATGTGTTCGATGATGATAATTGGTTGGGGTTTGCCGTATTTTCTCGGTTGTCCCACGACCAATATCCAAACATTAGCATTGGCAGTAATGCTCCTGATTCAGAGGATGCTATGCTTATTTGCCGTTTCGACTCTAATGTTGCCTTGCTGCCCTTATTTTATTACCCGTTTCAATTAAGTTTAAAGATTCGAGAGCCATCAGAATACAATGCGACTTGCTTCTGTTATATACCGCGCACTAGAGTTTGTAGTAAGGTTTGGAGGAAATGCAAATTGGCAAGGATAACTATGTGGTTGTCTAGCCAACGCTTAGCAGTGCATAGTTGTGCCCTTCGTCTACTATTTAAGGAGGACGTTGAACATCTTGTAGAAACACTGACCCTCGCCGAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

172

Amino Acids

20.04

Weight (kDa)

6.81

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 457
AccII CGCG 1 cut(s) 355
AciI CCGC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 65, 104
AcuI CTGAAG 1 cut(s) 84
AgsI TTSAA 5 cut(s) 40, 50, 64, 293, 479
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 377, 409
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 2 cut(s) 65, 104
Asp700I GAANNNNTTC 2 cut(s) 68, 125
AspLEI GCGC 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 451
BauI CACGAG 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 325
BceAI ACGGC 2 cut(s) 140, 228
BfaI CTAG 2 cut(s) 360, 420
BisI GCNGC 1 cut(s) 269
BlpI GCTNAGC 1 cut(s) 430
BlsI GCNGC 1 cut(s) 270
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 28
Bpu1102I GCTNAGC 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 451
Bsp1720I GCTNAGC 1 cut(s) 430
BspACI CCGC 1 cut(s) 353
BspFNI CGCG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 11
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 430
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 441, 494
CfoI GCGC 1 cut(s) 357
CviAII CATG 1 cut(s) 73
CviJI RGCY 2 cut(s) 316, 423
CviKI_1 RGCY 2 cut(s) 316, 423
DdeI CTNAG 1 cut(s) 430
DraI TTTAAA 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 104
FaeI CATG 1 cut(s) 76
FaiI YATR 6 cut(s) 74, 233, 348, 350, 410, 441
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 2 cut(s) 360, 420
GlaI GCGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 357
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HinfI GANTC 4 cut(s) 14, 218, 251, 307
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 5 cut(s) 13, 103, 120, 223, 322
Hpy188III TCNNGA 3 cut(s) 40, 215, 311
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 461
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 2 cut(s) 390, 439
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 360, 420
MaeII ACGT 1 cut(s) 474
MboII GAAGA 3 cut(s) 28, 61, 90
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 6 cut(s) 65, 104, 139, 293, 392, 509
MlyI GAGTC 2 cut(s) 8, 245
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 126, 217, 375, 463, 512
MroXI GAANNNNTTC 2 cut(s) 68, 125
MseI TTAA 3 cut(s) 296, 302, 465
MslI CAYNNNNRTG 1 cut(s) 444
MvnI CGCG 1 cut(s) 355
NlaIII CATG 1 cut(s) 76
PdmI GAANNNNTTC 2 cut(s) 68, 125
PfeI GAWTC 2 cut(s) 218, 307
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 2 cut(s) 8, 245
PpsI GAGTC 2 cut(s) 8, 245
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 3 cut(s) 296, 302, 465
SatI GCNGC 1 cut(s) 269
SchI GAGTC 2 cut(s) 8, 245
SduI GDGCHC 1 cut(s) 451
SetI ASST 3 cut(s) 378, 477, 517
SfaNI GCATC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 6 cut(s) 65, 104, 139, 293, 392, 509
SsiI CCGC 1 cut(s) 353
SspMI CTAG 2 cut(s) 360, 420
TaiI ACGT 1 cut(s) 477
TaqI TCGA 3 cut(s) 129, 249, 310
TasI AATT 6 cut(s) 65, 104, 139, 293, 392, 509
TfiI GAWTC 2 cut(s) 218, 307
Tru1I TTAA 3 cut(s) 296, 302, 465
Tru9I TTAA 3 cut(s) 296, 302, 465
TscAI CASTG 2 cut(s) 441, 501
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 61, 70
TspRI CASTG 2 cut(s) 441, 501
XapI RAATTY 2 cut(s) 65, 104
XmiI GTMKAC 1 cut(s) 457
XmnI GAANNNNTTC 2 cut(s) 68, 125
XspI CTAG 2 cut(s) 360, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.