RLG00000000638

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000129
Physical Location & Seq
Reverse (-)
2934473 .. 2935252
780 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000638

Sequence Viewer

Length: 780 bp
ATGTCAACTCCAGTCTTCACTAAGGTTCCAGTTGAAACGTTGGTGCTTCAATTTTGTCCAAGCTTGGTGGAGGTTCACCCGTCTCTTGGATTTCTGAAGAAACTTGTCTCTTTGAGTATGACATATTGCATGTCTATTGAGAGCATTCCACCTTTCACTACCTTGGAATCCCTTCAAATATTGAGGCTTTTATTCTGTTCAGGACTGAAGAAGTGTCCAGAAATTGAAGGAGATATGAAAAGCTTGCTGGAGCTTCATTTGGATGGGACCAGCATTGAGGAATTGCCTCCATCAATTGAACACTTGACTGGTCTAACCATGTTGAATCTAACAGGTTGTAAAAACCTTTTGCATCTTCCTAATACCATTGGGTGCTTGACATCTTTGAAAAGTCTCCATGTAACAGGTTGCTCTAAAATTGATGAGATACCTGAGAATCTGAATGGTATGATATGTCTGGAGAAGCTTGCAATTGGTGGAACTTCCATAAGGGAGTTATCTTTCAGTGTTGGCATGAAGAATCTACAGTATCTATCCTGCGGAGGATGTAAATGTCTAGTTTCAGAATCATGCAAAGCTCTGGCTTCGTTATCGAATTTGATAGAGCTAGACCTGAGTTATTGCAATCTGATGGATGGAGCAATTCTCAATGATTTTAGCGGCCTAATCACCTTAAGATGTTTACTTTTAATTGGTAATTGCTTTGTACTGTTACCTGAAAGTATCTATCAACTGTCAAAGCTCGAGATTCTGGACTTGAGTAACTACAGACAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

260

Amino Acids

28.35

Weight (kDa)

5.26

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 34 - 134 3.4e-09 Leucine-rich repeat region
LRR_13 PF23286 55 - 151 4.2e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 192 - 255 8.9e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 540, 660
AclI AACGTT 1 cut(s) 38
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 2 cut(s) 116, 227
AfaI GTAC 1 cut(s) 708
AfiI CCNNNNNNNGG 1 cut(s) 86
AflII CTTAAG 1 cut(s) 673
AgsI TTSAA 7 cut(s) 35, 50, 176, 227, 299, 325, 388
AluBI AGCT 8 cut(s) 63, 243, 253, 466, 578, 607, 742, 775
AluI AGCT 8 cut(s) 63, 243, 253, 466, 578, 607, 742, 775
Alw26I GTCTC 3 cut(s) 87, 112, 398
Ama87I CYCGRG 1 cut(s) 743
AoxI GGCC 1 cut(s) 661
ApoI RAATTY 1 cut(s) 595
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 68, 661
AvaI CYCGRG 1 cut(s) 743
AvaII GGWCC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 7
BccI CCATC 4 cut(s) 257, 298, 625, 629
BcoDI GTCTC 3 cut(s) 87, 112, 398
BfaI CTAG 2 cut(s) 557, 608
BfmI CTRYAG 2 cut(s) 524, 766
BfrI CTTAAG 1 cut(s) 673
BisI GCNGC 1 cut(s) 661
BlsI GCNGC 1 cut(s) 662
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 2 cut(s) 27, 268
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 7
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 2 cut(s) 269, 479
BpuEI CTTGAG 1 cut(s) 778
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 3 cut(s) 11, 29, 313
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 268, 551, 640
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 2 cut(s) 423, 605
BseNI ACTGG 3 cut(s) 11, 29, 313
BshFI GGCC 1 cut(s) 663
BsiHKCI CYCGRG 1 cut(s) 743
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 3 cut(s) 87, 112, 398
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 280
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 1 cut(s) 663
BsoBI CYCGRG 1 cut(s) 743
BspACI CCGC 2 cut(s) 540, 660
BspANI GGCC 1 cut(s) 663
BspCNI CTCAG 2 cut(s) 424, 606
BspLI GGNNCC 2 cut(s) 27, 268
BspTI CTTAAG 1 cut(s) 673
BsrI ACTGG 3 cut(s) 11, 29, 313
BssECI CCNNGG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 528, 711, 735
BstAFI CTTAAG 1 cut(s) 673
BstC8I GCNNGC 2 cut(s) 245, 468
BstDEI CTNAG 3 cut(s) 21, 432, 614
BstF5I GGATG 3 cut(s) 268, 551, 640
BstMAI GTCTC 3 cut(s) 87, 112, 398
BstNSI RCATGY 1 cut(s) 133
BstSFI CTRYAG 2 cut(s) 524, 766
BstV2I GAAGAC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 663
BtsCI GGATG 3 cut(s) 268, 551, 640
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 2 cut(s) 245, 468
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 707
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 5 cut(s) 130, 319, 398, 514, 570
CviQI GTAC 1 cut(s) 707
DdeI CTNAG 3 cut(s) 21, 432, 614
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 2 cut(s) 116, 227
Eco88I CYCGRG 1 cut(s) 743
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 5 cut(s) 133, 322, 401, 517, 573
FaqI GGGAC 1 cut(s) 280
FatI CATG 5 cut(s) 129, 318, 397, 513, 569
Fnu4HI GCNGC 1 cut(s) 661
FokI GGATG 3 cut(s) 275, 558, 647
Fsp4HI GCNGC 1 cut(s) 661
FspBI CTAG 2 cut(s) 557, 608
GluI GCNGC 1 cut(s) 661
GsuI CTGGAG 2 cut(s) 269, 479
HaeIII GGCC 1 cut(s) 663
Hin1II CATG 5 cut(s) 133, 322, 401, 517, 573
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 3 cut(s) 61, 241, 464
HinfI GANTC 6 cut(s) 167, 325, 436, 520, 566, 748
HphI GGTGA 2 cut(s) 68, 661
Hpy166II GTNNAC 3 cut(s) 6, 76, 683
Hpy188I TCNGA 4 cut(s) 96, 441, 565, 630
Hpy188III TCNNGA 5 cut(s) 201, 218, 458, 745, 752
Hpy8I GTNNAC 3 cut(s) 6, 76, 683
HpyAV CCTTC 2 cut(s) 182, 221
HpyCH4III ACNGT 3 cut(s) 528, 711, 735
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 5 cut(s) 129, 352, 470, 573, 624
HpyF3I CTNAG 3 cut(s) 21, 432, 614
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 5 cut(s) 133, 322, 401, 517, 573
LmnI GCTCC 2 cut(s) 250, 638
LweI GCATC 1 cut(s) 361
MaeI CTAG 2 cut(s) 557, 608
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 3 cut(s) 400, 711, 761
MboII GAAGA 5 cut(s) 7, 109, 220, 347, 529
MfeI CAATTG 2 cut(s) 294, 471
MnlI CCTC 5 cut(s) 64, 177, 271, 297, 536
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 3 cut(s) 674, 689, 778
MslI CAYNNNNRTG 1 cut(s) 261
MspCI CTTAAG 1 cut(s) 673
MunI CAATTG 2 cut(s) 294, 471
Mva1269I GAATGC 1 cut(s) 144
NlaIII CATG 5 cut(s) 133, 322, 401, 517, 573
NlaIV GGNNCC 2 cut(s) 27, 268
NspI RCATGY 1 cut(s) 133
PaeR7I CTCGAG 1 cut(s) 743
PctI GAATGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 6 cut(s) 167, 325, 436, 520, 566, 748
PkrI GCNGC 1 cut(s) 662
Psp1406I AACGTT 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 27, 268
PspPI GGNCC 1 cut(s) 267
RsaI GTAC 1 cut(s) 708
RsaNI GTAC 1 cut(s) 707
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 3 cut(s) 674, 689, 778
SatI GCNGC 1 cut(s) 661
Sau96I GGNCC 1 cut(s) 267
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 2 cut(s) 524, 766
Sfr274I CTCGAG 1 cut(s) 743
SinI GGWCC 1 cut(s) 267
SlaI CTCGAG 1 cut(s) 743
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 673, 743, 757
SmoI CTYRAG 3 cut(s) 673, 743, 757
SsiI CCGC 2 cut(s) 540, 660
SspI AATATT 1 cut(s) 180
SspMI CTAG 2 cut(s) 557, 608
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 528, 711, 735
TaiI ACGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 593, 744
TatI WGTACW 1 cut(s) 706
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 6 cut(s) 167, 325, 436, 520, 566, 748
Tru1I TTAA 3 cut(s) 674, 689, 778
Tru9I TTAA 3 cut(s) 674, 689, 778
TscAI CASTG 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 245, 251, 530
TspRI CASTG 1 cut(s) 511
Vha464I CTTAAG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 133
XhoI CTCGAG 1 cut(s) 743
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 2 cut(s) 557, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.