Rroxscaffold_3G00236280

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000129
Physical Location & Seq
Reverse (-)
23460806 .. 23461688
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236280.1

Sequence Viewer

Length: 792 bp
ATGCACATTTCCTTCAGAGTCGATACTCCTGGTGCAGAAGTTCAAAGAAGTTGCGGCCGTATTGTTTACCAGGAAGATTTAGAAGGGTTTGTTGAAACAATCGTCCGGTGCATGCAAAGAGAAGATACTCTTGAACTTTATGATAAATGGGTGGTAGAAGATTGGATAGACTTGATAGGATTGCAAGGGGGTCATTTATGTACTCCAAACAAATGCGATTCCATAACCCGACGGGAAAGGAAGTTGGAATTGCTCTCTCAGAAATATAGAAATCGGGACTGGGCTGTGTCTCCTCCTTATATTTGCGTCTTCTTTGGAGCTGAAATTTCCAAGTGGAATTGGTTCATGCACTTCAATGAGGGAAACACTGCAAAAATCCAACTGCCTCCTAATTTGTTCTATGATGCTAATTGGATGGGGATTGCTGTATGTGGTTTATGTTGGGCGTCCCACGAAGATTCAAACATTACACTAGACAGTAGTTCTGACACAGAGTATAATGTACTCAATTTGTGTCTGGACTCTGATGTCTGTTCAGACGGCTTATTTGATGTCAAATTACAGAAACTTTTTGGGAAACTCAAGCCATGGGAATTTGAAACCGATATCACATTTTTCTTCTATGTACCTCGTGTTAAATATTTAAAGTTTTGGAGACAATTCAACCTTGCCAGGGTTACTTTTTCATCTTCTAGCCCATGCTTAAGAATCTATAGTTGTGCCCTTCGTCTAGTATTTAAGGAGGACGTTGAAGATCTCGTTCGGACACTGACACTCTCCGAAATACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

263

Amino Acids

30.73

Weight (kDa)

5.14

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 113 - 251 3.5e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 324, 593
AcyI GRCGYC 1 cut(s) 446
AfaI GTAC 3 cut(s) 202, 504, 627
AfiI CCNNNNNNNGG 1 cut(s) 673
AflII CTTAAG 1 cut(s) 703
AgsI TTSAA 8 cut(s) 44, 95, 134, 355, 462, 599, 664, 752
AjnI CCWGG 3 cut(s) 28, 69, 671
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 294, 649
AoxI GGCC 1 cut(s) 55
ApoI RAATTY 2 cut(s) 324, 593
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
Asp700I GAANNNNTTC 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 724
BauI CACGAG 1 cut(s) 630
BbsI GAAGAC 1 cut(s) 301
BccI CCATC 1 cut(s) 409
BceAI ACGGC 2 cut(s) 42, 556
BciT130I CCWGG 3 cut(s) 30, 71, 673
BcoDI GTCTC 2 cut(s) 294, 649
BfaI CTAG 3 cut(s) 473, 693, 731
BfmI CTRYAG 1 cut(s) 712
BfrI CTTAAG 1 cut(s) 703
BglII AGATCT 1 cut(s) 754
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 30, 71, 673
BmrFI CCNGG 3 cut(s) 30, 71, 673
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 587, 672
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 1 cut(s) 284
BseBI CCWGG 3 cut(s) 30, 71, 673
BseDI CCNNGG 2 cut(s) 587, 672
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 724
BseX3I CGGCCG 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 58
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 2 cut(s) 290, 433
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 2 cut(s) 294, 649
BsmFI GGGAC 2 cut(s) 290, 433
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 724
Bsp143I GATC 1 cut(s) 754
Bsp19I CCATGG 1 cut(s) 587
BspACI CCGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 271
BspTI CTTAAG 1 cut(s) 703
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 587, 672
BssMI GATC 1 cut(s) 754
BssNI GRCGYC 1 cut(s) 446
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 3 cut(s) 30, 71, 673
Bst4CI ACNGT 1 cut(s) 479
BstACI GRCGYC 1 cut(s) 446
BstAFI CTTAAG 1 cut(s) 703
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 1 cut(s) 420
BstKTI GATC 1 cut(s) 757
BstMAI GTCTC 2 cut(s) 294, 649
BstMBI GATC 1 cut(s) 754
BstMCI CGRYCG 1 cut(s) 58
BstNI CCWGG 3 cut(s) 30, 71, 673
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 28, 69, 671
BstSFI CTRYAG 1 cut(s) 712
BstSLI GKGCMC 1 cut(s) 724
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 754
BstYI RGATCY 1 cut(s) 754
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 587
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 767
Cac8I GCNNGC 1 cut(s) 113
CseI GACGC 2 cut(s) 295, 435
Csp6I GTAC 3 cut(s) 201, 503, 626
CviAII CATG 4 cut(s) 112, 346, 588, 699
CviJI RGCY 6 cut(s) 57, 284, 320, 543, 586, 696
CviKI_1 RGCY 6 cut(s) 57, 284, 320, 543, 586, 696
CviQI GTAC 3 cut(s) 201, 503, 626
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 756
DpnII GATC 1 cut(s) 754
DraI TTTAAA 1 cut(s) 645
DrdI GACNNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 527
EaeI YGGCCR 1 cut(s) 55
EagI CGGCCG 1 cut(s) 55
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 587
Eco32I GATATC 1 cut(s) 607
Eco52I CGGCCG 1 cut(s) 55
EcoRII CCWGG 3 cut(s) 28, 69, 671
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 4 cut(s) 115, 349, 591, 702
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 2 cut(s) 290, 433
FatI CATG 4 cut(s) 111, 345, 587, 698
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 3 cut(s) 473, 693, 731
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 106
HgaI GACGC 2 cut(s) 295, 435
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 4 cut(s) 115, 349, 591, 702
HinfI GANTC 5 cut(s) 18, 218, 458, 521, 708
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 7 cut(s) 17, 261, 487, 526, 538, 765, 781
Hpy188III TCNNGA 3 cut(s) 131, 275, 518
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 3 cut(s) 22, 77, 734
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 747
HpyCH4V TGCA 7 cut(s) 4, 35, 111, 115, 184, 349, 371
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 747
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 4 cut(s) 115, 349, 591, 702
Kzo9I GATC 1 cut(s) 754
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 9 cut(s) 15, 42, 56, 83, 119, 265, 503, 658, 685
LweI GCATC 1 cut(s) 394
MaeI CTAG 3 cut(s) 473, 693, 731
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 1 cut(s) 676
MalI GATC 1 cut(s) 756
MboI GATC 1 cut(s) 754
MboII GAAGA 8 cut(s) 86, 134, 170, 301, 467, 610, 681, 764
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 9 cut(s) 248, 324, 337, 391, 409, 508, 557, 593, 659
MlyI GAGTC 2 cut(s) 27, 515
MmeI TCCRAC 2 cut(s) 225, 403
MnlI CCTC 5 cut(s) 303, 352, 396, 639, 736
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 4 cut(s) 636, 644, 704, 738
MslI CAYNNNNRTG 1 cut(s) 354
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 3 cut(s) 30, 71, 673
MvaI CCWGG 3 cut(s) 30, 71, 673
NcoI CCATGG 1 cut(s) 587
NdeII GATC 1 cut(s) 754
NlaIII CATG 4 cut(s) 115, 349, 591, 702
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 3 cut(s) 218, 458, 708
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 2 cut(s) 26, 515
PpsI GAGTC 2 cut(s) 26, 515
Psp6I CCWGG 3 cut(s) 28, 69, 671
PspGI CCWGG 3 cut(s) 28, 69, 671
PsuI RGATCY 1 cut(s) 754
RsaI GTAC 3 cut(s) 202, 504, 627
RsaNI GTAC 3 cut(s) 201, 503, 626
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 4 cut(s) 636, 644, 704, 738
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 754
SchI GAGTC 2 cut(s) 27, 515
ScrFI CCNGG 3 cut(s) 30, 71, 673
SduI GDGCHC 1 cut(s) 724
SetI ASST 5 cut(s) 322, 631, 669, 750, 790
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 712
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 581, 703
SmoI CTYRAG 2 cut(s) 581, 703
SphI GCATGC 1 cut(s) 115
Sse9I AATT 9 cut(s) 248, 324, 337, 391, 409, 508, 557, 593, 659
SsiI CCGC 1 cut(s) 54
SspI AATATT 1 cut(s) 641
SspMI CTAG 3 cut(s) 473, 693, 731
StyD4I CCNGG 3 cut(s) 28, 69, 671
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 750
TaqI TCGA 1 cut(s) 21
TasI AATT 9 cut(s) 248, 324, 337, 391, 409, 508, 557, 593, 659
TatI WGTACW 2 cut(s) 200, 502
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 3 cut(s) 218, 458, 708
Tru1I TTAA 4 cut(s) 636, 644, 704, 738
Tru9I TTAA 4 cut(s) 636, 644, 704, 738
TscAI CASTG 2 cut(s) 373, 774
TspDTI ATGAA 2 cut(s) 334, 675
TspRI CASTG 2 cut(s) 373, 774
Vha464I CTTAAG 1 cut(s) 703
XapI RAATTY 2 cut(s) 324, 593
XceI RCATGY 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 3 cut(s) 473, 693, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.