Rorug07G0337700

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000129
Physical Location & Seq
Forward (+)
37107862 .. 37109037
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0337700.1

Sequence Viewer

Length: 1176 bp
ATGAAGAGGGTAAGGTCCTTGGAACTTACTGAACAGAGGCAGAATAACATGGAGGAGGAGCTTCAACAACATAAAAAAATGCTCAAGGAGTCGTCTGAACGTCAACTTTACCTGAAAGACCAATTTGTGCTGATTGAAGGGGAGAAACGAGATATTTCTGAGACTTTAGAAAAGGTGAATCTTGAGTTGGCCGAGAAAATTTGTGAAATAAGTCGATTAGAAGACGAATTAAAGAGTTGGAAGTCTAGTCCTGAAAGCTTGAAAATTTGCTGTGAAGAAAATCAAGAAAAATGTCGACAAATAGAGGATTCAATCCCTGTACAAACAAAGAATGAAGAAGTCCTTAAGAATGAGAGAGAAAGCCTCATCTCCATTATCAAAGAGAAAAACAGTACACTTGAAGTTCTGCAGCAGCAGATAGTCCTATTAGCAGCTGCAGTAGCAGCAAAGAATGAGGAAGTGGAAGCCCGCACACAAGACAAAGAGAACCTTATCCAAAATGCAAAGGACAAGGATAGCTGCATAGAAAATCTCCACAAAGATATCTCACAGCTGGAACAAGAGTGCATAAGAAGAGAAATGGAAGCGACAATTCTTGCAAGGTTTGATGCAGAGAAATGTGTTGGACGAGATAAAGAGAGGCTTTTCAAGGTTATCAGTGAGAAAGATCAGAACATACAAAGTCTTGAGGTATATGCAGTATCATTAGAGCAAGACTTGACTACTGTTTTAACTTCCTCCTTTGCTGAAGTTGTAGAAAATCTGGTTTCAATTGATGTGCTTACTGAAGCTTTGAAGAAGGCCAAGCATATGTCAGAGCTACAGGTTGAAGACAGGAACAAAAGAATTGTTGATTTGGAGAAAGAAGTAACTGGTTCGCACCAAAGATTGATACATCAGGAGGAAGCCTTGTTCCATCTTAAACAACAGGTAGAGGAACTTGAAGCATTATTGGAAGCCAAGAAACTGGAAACCAATAAGGTGATGGTTGAACAGAGGATTTCGGAAGGCATAGTCAAGCAGCTTGAATATGAAAAAGCTATCCTCCTTCAAGACACCACAAAGCTATCAAAAGAAAGAGGGCATATTTTTGTTCATCTTGAAGAATTTTGTGATCGTATCGGTGAGCTCACTTATCAGGATACAAGGATGATGGACAATGCTGCAAGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

391

Amino Acids

45.56

Weight (kDa)

5.03

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 295
AciI CCGC 1 cut(s) 469
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 3 cut(s) 198, 264, 1106
AcuI CTGAAG 2 cut(s) 768, 807
AfaI GTAC 2 cut(s) 321, 394
AflII CTTAAG 1 cut(s) 344
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AloI GAACNNNNNNTCC 2 cut(s) 896, 928
Alw21I GWGCWC 1 cut(s) 1131
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 2 cut(s) 189, 801
ApeKI GCWGC 8 cut(s) 409, 412, 431, 434, 443, 519, 1021, 1163
ApoI RAATTY 3 cut(s) 198, 264, 1106
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 3 cut(s) 187, 994, 1136
AvaII GGWCC 1 cut(s) 15
BanII GRGCYC 1 cut(s) 1131
BbsI GAAGAC 2 cut(s) 228, 837
Bbv12I GWGCWC 1 cut(s) 1131
BbvI GCAGC 8 cut(s) 421, 421, 424, 443, 455, 506, 1033, 1150
BccI CCATC 3 cut(s) 924, 979, 1147
BciVI GTATCC 1 cut(s) 1135
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 3 cut(s) 407, 435, 821
BfrI CTTAAG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 1135
BisI GCNGC 8 cut(s) 410, 413, 432, 435, 444, 520, 1022, 1164
BlsI GCNGC 8 cut(s) 411, 414, 433, 436, 445, 521, 1023, 1165
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmsI GCATC 1 cut(s) 598
BpiI GAAGAC 2 cut(s) 228, 837
BplI GAGNNNNNCTC 2 cut(s) 348, 380
BpuEI CTTGAG 3 cut(s) 68, 203, 707
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 2 cut(s) 877, 972
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 1155
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 877, 972
BseRI GAGGAG 2 cut(s) 68, 71
BseXI GCAGC 8 cut(s) 421, 421, 424, 443, 455, 506, 1033, 1150
BshFI GGCC 2 cut(s) 191, 803
BsiHKAI GWGCWC 1 cut(s) 1131
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 2 cut(s) 191, 803
Bsp1286I GDGCHC 1 cut(s) 1131
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 2 cut(s) 667, 1114
BspACI CCGC 1 cut(s) 469
BspANI GGCC 2 cut(s) 191, 803
BspCNI CTCAG 1 cut(s) 151
BspMAI CTGCAG 2 cut(s) 411, 439
BspTI CTTAAG 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 2 cut(s) 877, 972
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 667, 1114
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 392, 727
Bst6I CTCTTC 1 cut(s) 568
BstAFI CTTAAG 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 1155
BstKTI GATC 2 cut(s) 670, 1117
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 667, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 440, 443
BstSFI CTRYAG 3 cut(s) 407, 435, 821
BstV1I GCAGC 8 cut(s) 421, 421, 424, 443, 455, 506, 1033, 1150
BstV2I GAAGAC 2 cut(s) 228, 837
BstXI CCANNNNNNTGG 1 cut(s) 967
BsuI GTATCC 1 cut(s) 1135
BsuRI GGCC 2 cut(s) 191, 803
BtsCI GGATG 1 cut(s) 1155
BtsIMutI CAGTG 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 320, 393
CviAII CATG 1 cut(s) 49
CviQI GTAC 2 cut(s) 320, 393
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 669, 1116
DpnII GATC 2 cut(s) 667, 1114
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
Ecl136II GAGCTC 1 cut(s) 1129
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 1131
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 1129
Eco57I CTGAAG 2 cut(s) 768, 807
EcoICRI GAGCTC 1 cut(s) 1129
EcoO109I RGGNCCY 1 cut(s) 15
EcoRV GATATC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 1131
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 52
FalI AAGNNNNNCTT 6 cut(s) 327, 359, 474, 506, 627, 659
FatI CATG 1 cut(s) 48
FauI CCCGC 1 cut(s) 476
FauNDI CATATG 1 cut(s) 810
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 8 cut(s) 410, 413, 432, 435, 444, 520, 1022, 1164
FokI GGATG 1 cut(s) 1162
FriOI GRGCYC 1 cut(s) 1131
Fsp4HI GCNGC 8 cut(s) 410, 413, 432, 435, 444, 520, 1022, 1164
FspBI CTAG 1 cut(s) 246
GluI GCNGC 8 cut(s) 410, 413, 432, 435, 444, 520, 1022, 1164
HaeIII GGCC 2 cut(s) 191, 803
Hin1II CATG 1 cut(s) 52
HincII GTYRAC 2 cut(s) 104, 296
HindII GTYRAC 2 cut(s) 104, 296
HindIII AAGCTT 2 cut(s) 256, 789
HinfI GANTC 3 cut(s) 89, 178, 308
HphI GGTGA 3 cut(s) 187, 994, 1136
Hpy166II GTNNAC 3 cut(s) 104, 296, 395
Hpy188I TCNGA 5 cut(s) 97, 160, 672, 817, 1006
Hpy188III TCNNGA 8 cut(s) 182, 251, 284, 686, 899, 1052, 1100, 1139
Hpy8I GTNNAC 3 cut(s) 104, 296, 395
HpyAV CCTTC 4 cut(s) 131, 793, 1001, 1058
HpyCH4III ACNGT 2 cut(s) 392, 727
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 9 cut(s) 409, 437, 503, 522, 567, 599, 611, 698, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 443
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 1 cut(s) 52
Kzo9I GATC 2 cut(s) 667, 1114
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 8 cut(s) 421, 421, 424, 443, 455, 506, 1033, 1150
LweI GCATC 1 cut(s) 598
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 868
MalI GATC 2 cut(s) 669, 1116
MboI GATC 2 cut(s) 667, 1114
MboII GAAGA 8 cut(s) 16, 233, 287, 347, 585, 808, 842, 1115
MfeI CAATTG 1 cut(s) 771
MhlI GDGCHC 1 cut(s) 1131
MluCI AATT 8 cut(s) 122, 198, 227, 264, 591, 771, 846, 1106
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 218, 604
MseI TTAA 5 cut(s) 230, 345, 731, 921, 1174
MspA1I CMGCKG 2 cut(s) 434, 553
MspCI CTTAAG 1 cut(s) 344
MunI CAATTG 1 cut(s) 771
MwoI GCNNNNNNNGC 2 cut(s) 440, 443
NdeI CATATG 1 cut(s) 810
NdeII GATC 2 cut(s) 667, 1114
NlaIII CATG 1 cut(s) 52
NmeAIII GCCGAG 1 cut(s) 217
PfeI GAWTC 2 cut(s) 178, 308
PkrI GCNGC 8 cut(s) 411, 414, 433, 436, 445, 521, 1023, 1165
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 1131
Psp5II RGGWCCY 1 cut(s) 15
PspPI GGNCC 1 cut(s) 15
PspPPI RGGWCCY 1 cut(s) 15
PstI CTGCAG 2 cut(s) 411, 439
PvuII CAGCTG 2 cut(s) 434, 553
RsaI GTAC 2 cut(s) 321, 394
RsaNI GTAC 2 cut(s) 320, 393
SacI GAGCTC 1 cut(s) 1131
SalI GTCGAC 1 cut(s) 294
SaqAI TTAA 5 cut(s) 230, 345, 731, 921, 1174
SatI GCNGC 8 cut(s) 410, 413, 432, 435, 444, 520, 1022, 1164
Sau3AI GATC 2 cut(s) 667, 1114
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 1131
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 3 cut(s) 407, 435, 821
SinI GGWCC 1 cut(s) 15
SmlI CTYRAG 4 cut(s) 83, 182, 344, 686
SmoI CTYRAG 4 cut(s) 83, 182, 344, 686
Sse9I AATT 8 cut(s) 122, 198, 227, 264, 591, 771, 846, 1106
SsiI CCGC 1 cut(s) 469
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 1131
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 392, 727
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 214, 295
TasI AATT 8 cut(s) 122, 198, 227, 264, 591, 771, 846, 1106
TatI WGTACW 2 cut(s) 319, 392
TfiI GAWTC 2 cut(s) 178, 308
Tru1I TTAA 5 cut(s) 230, 345, 731, 921, 1174
Tru9I TTAA 5 cut(s) 230, 345, 731, 921, 1174
TscAI CASTG 1 cut(s) 664
TseI GCWGC 8 cut(s) 409, 412, 431, 434, 443, 519, 1021, 1163
TspDTI ATGAA 4 cut(s) 17, 348, 1047, 1085
TspRI CASTG 1 cut(s) 664
Vha464I CTTAAG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 3 cut(s) 198, 264, 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XmiI GTMKAC 1 cut(s) 295
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.