Rmu_sc0001070.1_g000016

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001070.1
Physical Location & Seq
Forward (+)
85610 .. 93023
7414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001070.1_g000016.1.cds

Sequence Viewer

Length: 5079 bp
atgactaccaaaatagatcttccttcctcttcttcttcttcttcttcttcttcttgtcctcctcctccatttcgtgaattgacatacgatgtgttcctcagttttagaggtatagatacccgcacaaatttcacagaccatctttataccgctctcaagcagaaaggaataaacacatttagagatgatgaagaacttgagagaggggaatcaattggtccatatctcttgaaagcaattaaagaatcaagatatgttattgttgttttttcccaaaactacgcagattcttcgtggtgtttgaatgagctcgcagaagtcactaaatgtaggagagccacaggacaaacagtcctccctgtgttctaccatgttgatccatctgaggtacgaaaacaaacaggagagcactttgggaaagcatttgagaagcatcaaaagcggtatgaagaggaaccagacaaagtaaaggggtggaaaaacgctcttgctgaagtaggcaatctctctggatggcatctgcaaaatgggctttttaggattgttttgcttggagggttgacagtggtggctgacgtcgacttctggtttgaagcaacaatgagtcaaggacccaaattcggttgggtttgggtctgtattgtttgcataggttttgttggtgtctcttgggtggtggcgtctaggtggtgcaatggtggtgttccttgttctgtggcggtggtggatgcgctcgcgatggacctgcacatagaggcggagactgggtctgaagccaaaattattcaagaaattgtacaaaaggttttcactgagttgaataaaataatcttcacatctgagggcttagttgggatggattctcacctgaatgaactgttttcctacttcgacattgggtgtctcgacgatgttcgtatcatagggatttgtgggatgggtggtatcgggaaaactactattgcagaagtggtttttgaaaggctaaaaactcagtttgaaggtcatagctttcttgcgaatgttaaacagcaaagtacaattgaattacaggagaaacttctcttgaacttgctgaatagtaatgtcaatgtacagaatcctaaaatgggaaaagacataattaagcacagactatctactaaaagagtgcttattgttcttgatgatgtggatcaagatgaacaattggaaacattgtgtcatcatacttggtttggtctagggagtagaatcatcataacatccagagatgaacacttgttcagtgcatgtagagcaaataaagtgtacaaggtgaatgcattaactgagcctgaagcttttgagctcttttgtttgaaagccttcaaggaagacgaggttggagaagattttttcaagctatccaaggaatttttgaaatatgctaatggccttccattagctattaaaattttgggatcgtctgttcgtggtagaagtgtggaggtatggtcaagtgcattgaagagacttaaaaaaaatcctccggaagggattactgatgttcttaaatttagttttgatggattagaaaaaacagaaaagaaaacgtttttggacatcgcgtgtttctttaaaggagagtacaaggatcgtgtaataagaatactaggtggttgtgatgatgacggtgtgaaaatggatgtagctgttcttgtggacaaatctttgataactccatttggaacaaaattgtggatgcatgatttgatacaagaaatgggttgggaagttgttcgtcaagaatgtcttaataatcctggagaacgtagcagattgtggcttccaaatgagattatccatgtacttgatcggagtaaggcgacgagtgcagttgaaagcatattcctccaatgtccaatagaagacgatgttgttcactcaattgataatgccttctcaaatatggacagattgagattgctcaagatttggaatgtgaagttttctggaaacatcacatatctttctaatgagttacagtatcttgattggcatgggtgccctttggattctttcccatcagacttccaaccggataaacttgttgaacttcacttgtgtattagcagcatcaaacaactatggaggggaaaaaagggatggggcatgctacggcatatagatctgagtggttcacaatacttgatgtcgactccagacttcactgaggttccagatcttgaaaagttggtgcttcaatcttgtacgagcttggtggaggttcacccgtctcttggatctctgaagaaacttgtctctttggatatgacatattgcaagtctattgagagaattccacctttcactgcccttgaatcccttcaaatattgaagctttcatcctgttcaggactgaagatgtttccagaaattgaaggaaatatgaaatgcttgctggagcttcatttggatgggaccagcattgaggaattgcctccatcaattgaacgcttgactggtcttaccatgttgaatctaacagactgtaaaaaccttttgcacctacccaataccattgggtgcttgacgtctttgaaaagtctctatcttacaggttgctccaaaattgatgagatacccgagaatctgaatggtatgaaatgtctggagacgcttttcattggtggaacttccataagggagttatctttcattttaggcacgaagaatctacagtatctgtcctgccgaggatgtagatgtgtagtttcagaatcatggggctatctgacttggttatcgagtttgatagagctagacgtcagttattgcaatctgatggagggagcaattctcaattattttcgcagcctgatctccttaagaaggttggatttaagtggtaattgttttgtgcaattacctgaaagtttctctcaactctcagagctcgagactctggacttgagtaattgcaggcagcttcaattgctgcccaagaagtttccgttaagtcttcatcacgtgtatgcacaaaattgtacttcactgacggattacccaaatcaaatgaaagtattgaattcatcggactcgggagtgactatagtcaattccctcaattctccagcacttgaaggagactcagaaagtttcacagtgttgaatttttcaagaaaatatggggattctatggacctgcatgtgacatataagcatacaaaggggaagcaagttgatcatttgccactaacaaatctagcgcatctaaaacaaatgcctttctttgcagatgcctttcttttctgtactgtagatgctagcgatgaaattccagagtggttcagaactagatctagcagaaatcccatatcaatctcgatacctcaaaatctggccgatgataacaagtggaagggatttggcgtgtgcgctatattctcagtcaaggggcatactgatatctcccttattgaaccggatcctgatttttctaattactcgtatcaaatcacattggaaactgatgctgcgcctctgaaaggaggtgcgacgtgcatctcagttggccgccaccttggatcaagttctcatctgcttgtgattttctatatatctaggttgcagtttccacagagtgtgttaaatcaatcaactgaggtgaaagctatgtttgaaaccaccaatccatccatggtggtccagaaatgtggaattcgtctagcctacgagcaagatgctggatggttttccagaataaaggatgaggaacacgcgatttgtctgaataaagttgcccctgcccctgcctgctggcttaatcaatctatggaatgggagaaattcattccacccttggaagaagaatccacactagtgctgagaaagaaccttgagtctgttcttccaagattccttcaggcactaaacagatctacaatattcaaatttaacctcagaggaaacccaggctggtttcgtgagtcgttttaccctagaacgaggtcagatcgggtcaatatgtcattcgagctgcctcaaaatctacacaagagcaagaagtggatgggatttgcaatacacgcatcactcgtagaggaagtagcgcagacaaggaaacaggactactatctggtatctgttgcgctaaaaactggggataaattatccatagttgatattcgcgtacttgggcacgtcaggccattgtcagaagaacatcatcaattattggttttttacatacctcgggcagagattccagaagtgttgttcgctcagacattaacaactaccatggacttttacatctttatcagtgatagccctaatgtaaaggctcaaagatgtgggttccatattgtgtaccgggaagatatacaagggtttgctgatactatcatccagtgcatgcagagggaagattctcttgaatctcacaataagttggtggtaaaagcatggataaagttgatacgatcgcaaggtgcccatatagagggaatgaaagaacgggattccagaaccccacgggaaaatcactttgaattgcgctcacgaaaatatagaaattggtttcaggactggtctgaccctcgtcctgttttttgttacttcgagggagctgaaatttccaagtggaaatggttcatgcctttcatcaaccaaggcaactctgcagaaatccaactgcctctgaatgtgttcgatgatgataattggttggggtttgccttatgttttcagttgtcccacgatcaatgtgcaaacaatagtcttggcagtactgctcctgattcagaggatgttatgtttatttgccagctggactctgatgttgcttggcacggcttatttgatgtcatgatacatacagatggcatgatacgtacagttggcattaagctactcgagccatcctatatgacttggttcttatatataccgcgcactaaagttcatagtaagatgtggaggcaatgcaaattggccaggataactatgtggttctctcgcccgtgcttagcagtgcatagttgtgcccttcgtctactatttaaggatgatgttgaagatctggtagaaacactgaccctcgccgaatcaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1692

Amino Acids

192.31

Weight (kDa)

5.92

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 579, 2558, 2790
Acc36I ACCTGC 2 cut(s) 753, 3174
AccB1I GGYRCC 2 cut(s) 2025, 4454
AccBSI CCGCTC 1 cut(s) 152
AccI GTMKAC 3 cut(s) 579, 2177, 5017
AccII CGCG 5 cut(s) 737, 1589, 3743, 4152, 4915
AccIII TCCGGA 1 cut(s) 1510
AciI CCGC 7 cut(s) 121, 150, 442, 719, 758, 3538, 4913
AclI AACGTT 1 cut(s) 1574
AclWI GGATC 8 cut(s) 371, 1182, 1450, 1623, 2272, 3443, 3456, 3556
AcoI YGGCCR 3 cut(s) 3363, 3535, 4956
AcuI CTGAAG 6 cut(s) 513, 792, 1338, 2291, 2402, 3869
AcvI CACGTG 1 cut(s) 2992
AcyI GRCGYC 4 cut(s) 576, 680, 2555, 2787
AdeI CACNNNGTG 1 cut(s) 3605
AfiI CCNNNNNNNGG 7 cut(s) 620, 1109, 1514, 2261, 2853, 3509, 4465
AflII CTTAAG 1 cut(s) 2848
AflIII ACRYGT 1 cut(s) 2991
AhdI GACNNNNNGTC 1 cut(s) 350
AhlI ACTAGT 1 cut(s) 3841
AjiI CACGTC 2 cut(s) 3522, 4165
AjnI CCWGG 3 cut(s) 1783, 3934, 4958
AjuI GAANNNNNNNTTGG 4 cut(s) 1347, 1379, 1562, 1594
AleI CACNNNNGTG 1 cut(s) 3842
AloI GAACNNNNNNTCC 2 cut(s) 1434, 1466
Alw21I GWGCWC 4 cut(s) 312, 411, 1332, 2919
AlwI GGATC 8 cut(s) 371, 1182, 1450, 1623, 2272, 3443, 3456, 3556
AlwNI CAGNNNCTG 1 cut(s) 2707
Ama87I CYCGRG 5 cut(s) 2606, 2918, 3061, 4215, 4877
Aor13HI TCCGGA 1 cut(s) 1510
AoxI GGCC 5 cut(s) 1414, 3363, 3535, 4169, 4956
ApeKI GCWGC 6 cut(s) 2094, 2835, 2947, 2959, 3497, 4000
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
Asp700I GAANNNNTTC 5 cut(s) 1346, 1758, 2346, 4613, 4670
AspLEI GCGC 8 cut(s) 733, 3232, 3401, 3502, 4075, 4114, 4521, 4917
AspS9I GGNCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
AsuC2I CCSGG 1 cut(s) 4337
AsuHPI GGTGA 5 cut(s) 857, 1309, 2243, 3640, 5064
AsuNHI GCTAGC 1 cut(s) 3287
AvaI CYCGRG 5 cut(s) 2606, 2918, 3061, 4215, 4877
AvaII GGWCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
BaeGI GKGCMC 4 cut(s) 2030, 4164, 4459, 5011
BalI TGGCCA 1 cut(s) 4958
BamHI GGATCC 1 cut(s) 3448
BanI GGYRCC 2 cut(s) 2025, 4454
BanII GRGCYC 3 cut(s) 312, 1332, 2919
BbrPI CACGTG 1 cut(s) 2992
BbsI GAAGAC 3 cut(s) 1362, 1896, 2975
Bbv12I GWGCWC 4 cut(s) 312, 411, 1332, 2919
BbvI GCAGC 6 cut(s) 2106, 2847, 2946, 2959, 3484, 3987
BceAI ACGGC 2 cut(s) 2156, 4831
BcgI CGANNNNNNTGC 8 cut(s) 273, 307, 727, 761, 3686, 3720, 4712, 4746
BciT130I CCWGG 3 cut(s) 1785, 3936, 4960
BclI TGATCA 1 cut(s) 3205
BcnI CCSGG 1 cut(s) 4337
BcuI ACTAGT 1 cut(s) 3841
BfmI CTRYAG 4 cut(s) 2699, 3072, 3279, 4644
BfrI CTTAAG 1 cut(s) 2848
BfuAI ACCTGC 2 cut(s) 753, 3174
BglII AGATCT 6 cut(s) 16, 2149, 2203, 3320, 3899, 5041
BisI GCNGC 7 cut(s) 2095, 2836, 2948, 2960, 3498, 3538, 4001
BlpI GCTNAGC 1 cut(s) 4990
BlsI GCNGC 7 cut(s) 2096, 2837, 2949, 2961, 3499, 3539, 4002
BmcAI AGTACT 1 cut(s) 4753
Bme1390I CCNGG 4 cut(s) 1785, 3936, 4337, 4960
Bme18I GGWCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
BmeRI GACNNNNNGTC 1 cut(s) 350
BmeT110I CYCGRG 5 cut(s) 2606, 2918, 3061, 4215, 4877
BmgBI CACGTC 2 cut(s) 3522, 4165
BmgT120I GGNCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
BmiI GGNNCC 8 cut(s) 456, 613, 2027, 2199, 2443, 3450, 4322, 4456
BmrFI CCNGG 4 cut(s) 1785, 3936, 4337, 4960
BmrI ACTGGG 2 cut(s) 774, 4131
BmtI GCTAGC 1 cut(s) 3291
BmuI ACTGGG 2 cut(s) 774, 4131
BoxI GACNNNNGTC 2 cut(s) 3074, 4563
BpiI GAAGAC 3 cut(s) 1362, 1896, 2975
BplI GAGNNNNNCTC 2 cut(s) 2805, 2837
BpmI CTGGAG 5 cut(s) 1806, 2166, 2444, 2654, 3078
Bpu1102I GCTNAGC 1 cut(s) 4990
BpuEI CTTGAG 5 cut(s) 140, 218, 1934, 2953, 3881
BpuMI CCSGG 1 cut(s) 4337
BsaAI YACGTR 2 cut(s) 2992, 4856
BsaBI GATNNNNATC 1 cut(s) 1173
BsaHI GRCGYC 4 cut(s) 576, 680, 2555, 2787
BsaWI WCCGGW 3 cut(s) 1510, 2059, 3445
BsaXI ACNNNNNCTCC 4 cut(s) 752, 782, 1460, 1490
Bsc4I CCNNNNNNNGG 7 cut(s) 620, 1109, 1514, 2261, 2853, 3509, 4465
Bse1I ACTGG 5 cut(s) 769, 2488, 4126, 4372, 4556
Bse3DI GCAATG 2 cut(s) 700, 4952
Bse8I GATNNNNATC 1 cut(s) 1173
BseAI TCCGGA 1 cut(s) 1510
BseBI CCWGG 3 cut(s) 1785, 3936, 4960
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 7 cut(s) 620, 1109, 1514, 2261, 2853, 3509, 4465
BseMI GCAATG 2 cut(s) 700, 4952
BseNI ACTGG 5 cut(s) 769, 2488, 4126, 4372, 4556
BseRI GAGGAG 2 cut(s) 51, 54
BseSI GKGCMC 4 cut(s) 2030, 4164, 4459, 5011
BseXI GCAGC 6 cut(s) 2106, 2847, 2946, 2959, 3484, 3987
BsgI GTGCAG 2 cut(s) 731, 1875
Bsh1236I CGCG 5 cut(s) 737, 1589, 3743, 4152, 4915
Bsh1285I CGRYCG 1 cut(s) 4448
BshFI GGCC 5 cut(s) 1416, 3365, 3537, 4171, 4958
BshNI GGYRCC 2 cut(s) 2025, 4454
BsiEI CGRYCG 1 cut(s) 4448
BsiHKAI GWGCWC 4 cut(s) 312, 411, 1332, 2919
BsiHKCI CYCGRG 5 cut(s) 2606, 2918, 3061, 4215, 4877
BsiSI CCGG 4 cut(s) 1511, 2060, 3446, 4336
BslFI GGGAC 2 cut(s) 2455, 4702
BslI CCNNNNNNNGG 7 cut(s) 620, 1109, 1514, 2261, 2853, 3509, 4465
BsmBI CGTCTC 2 cut(s) 2262, 2630
BsmFI GGGAC 2 cut(s) 2455, 4702
BsmI GAATGC 1 cut(s) 1306
BsnI GGCC 5 cut(s) 1416, 3365, 3537, 4171, 4958
BsoBI CYCGRG 5 cut(s) 2606, 2918, 3061, 4215, 4877
Bsp1286I GDGCHC 8 cut(s) 312, 411, 1332, 2030, 2919, 4164, 4459, 5011
Bsp13I TCCGGA 1 cut(s) 1510
Bsp1407I TGTACA 3 cut(s) 796, 1093, 1290
Bsp1720I GCTNAGC 1 cut(s) 4990
Bsp19I CCATGG 2 cut(s) 3660, 4263
Bsp68I TCGCGA 1 cut(s) 737
BspACI CCGC 7 cut(s) 121, 150, 442, 719, 758, 3538, 4913
BspANI GGCC 5 cut(s) 1416, 3365, 3537, 4171, 4958
BspEI TCCGGA 1 cut(s) 1510
BspFNI CGCG 5 cut(s) 737, 1589, 3743, 4152, 4915
BspHI TCATGA 1 cut(s) 4830
BspLI GGNNCC 8 cut(s) 456, 613, 2027, 2199, 2443, 3450, 4322, 4456
BspMAI CTGCAG 1 cut(s) 4648
BspMI ACCTGC 2 cut(s) 753, 3174
BspOI GCTAGC 1 cut(s) 3291
BspPI GGATC 8 cut(s) 371, 1182, 1450, 1623, 2272, 3443, 3456, 3556
BspT107I GGYRCC 2 cut(s) 2025, 4454
BspTI CTTAAG 1 cut(s) 2848
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 700, 4952
BsrGI TGTACA 3 cut(s) 796, 1093, 1290
BsrI ACTGG 5 cut(s) 769, 2488, 4126, 4372, 4556
BssNI GRCGYC 4 cut(s) 576, 680, 2555, 2787
BssT1I CCWWGG 6 cut(s) 1389, 3544, 3660, 3822, 4263, 4633
Bst2UI CCWGG 3 cut(s) 1785, 3936, 4960
Bst6I CTCTTC 3 cut(s) 34, 444, 1484
BstACI GRCGYC 4 cut(s) 576, 680, 2555, 2787
BstAFI CTTAAG 1 cut(s) 2848
BstAUI TGTACA 3 cut(s) 796, 1093, 1290
BstBAI YACGTR 2 cut(s) 2992, 4856
BstDSI CCRYGG 3 cut(s) 3660, 4263, 4496
BstENI CCTNNNNNAGG 3 cut(s) 1512, 2851, 3507
BstFNI CGCG 5 cut(s) 737, 1589, 3743, 4152, 4915
BstHHI GCGC 8 cut(s) 733, 3232, 3401, 3502, 4075, 4114, 4521, 4917
BstMCI CGRYCG 1 cut(s) 4448
BstMWI GCNNNNNNNGC 8 cut(s) 439, 529, 1277, 1853, 2956, 4049, 4168, 4879
BstNI CCWGG 3 cut(s) 1785, 3936, 4960
BstNSI RCATGY 4 cut(s) 1275, 2137, 3173, 4381
BstPAI GACNNNNGTC 2 cut(s) 3074, 4563
BstSCI CCNGG 4 cut(s) 1783, 3934, 4335, 4958
BstSFI CTRYAG 4 cut(s) 2699, 3072, 3279, 4644
BstSLI GKGCMC 4 cut(s) 2030, 4164, 4459, 5011
BstSNI TACGTA 1 cut(s) 4856
BstUI CGCG 5 cut(s) 737, 1589, 3743, 4152, 4915
BstV1I GCAGC 6 cut(s) 2106, 2847, 2946, 2959, 3484, 3987
BstV2I GAAGAC 3 cut(s) 1362, 1896, 2975
BstX2I RGATCY 8 cut(s) 16, 2149, 2203, 2264, 3320, 3448, 3899, 5041
BstXI CCANNNNNNTGG 1 cut(s) 3677
BstYI RGATCY 8 cut(s) 16, 2149, 2203, 2264, 3320, 3448, 3899, 5041
BsuRI GGCC 5 cut(s) 1416, 3365, 3537, 4171, 4958
BtgI CCRYGG 3 cut(s) 3660, 4263, 4496
BtgZI GCGATG 3 cut(s) 752, 1570, 3306
BtrI CACGTC 2 cut(s) 3522, 4165
BtsI GCAGTG 2 cut(s) 2331, 5001
BtuMI TCGCGA 1 cut(s) 737
BveI ACCTGC 2 cut(s) 753, 3174
CaiI CAGNNNCTG 1 cut(s) 2707
CciI TCATGA 1 cut(s) 4830
CfoI GCGC 8 cut(s) 733, 3232, 3401, 3502, 4075, 4114, 4521, 4917
Cfr13I GGNCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
CseI GACGC 2 cut(s) 669, 2647
DraI TTTAAA 1 cut(s) 1600
DraIII CACNNNGTG 1 cut(s) 3605
DriI GACNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 3 cut(s) 3363, 3535, 4956
Eam1104I CTCTTC 3 cut(s) 34, 444, 1484
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 3 cut(s) 34, 444, 1484
EciI GGCGGA 1 cut(s) 773
Ecl136II GAGCTC 3 cut(s) 310, 1330, 2917
Eco105I TACGTA 1 cut(s) 4856
Eco130I CCWWGG 6 cut(s) 1389, 3544, 3660, 3822, 4263, 4633
Eco24I GRGCYC 3 cut(s) 312, 1332, 2919
Eco32I GATATC 1 cut(s) 3430
Eco47I GGWCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
Eco53kI GAGCTC 3 cut(s) 310, 1330, 2917
Eco57I CTGAAG 6 cut(s) 513, 792, 1338, 2291, 2402, 3869
Eco72I CACGTG 1 cut(s) 2992
Eco88I CYCGRG 5 cut(s) 2606, 2918, 3061, 4215, 4877
EcoICRI GAGCTC 3 cut(s) 310, 1330, 2917
EcoNI CCTNNNNNAGG 3 cut(s) 1512, 2851, 3507
EcoO109I RGGNCCY 1 cut(s) 611
EcoRI GAATTC 3 cut(s) 2319, 3049, 3681
EcoRII CCWGG 3 cut(s) 1783, 3934, 4958
EcoRV GATATC 1 cut(s) 3430
EcoT14I CCWWGG 6 cut(s) 1389, 3544, 3660, 3822, 4263, 4633
EcoT22I ATGCAT 2 cut(s) 1306, 1728
EcoT38I GRGCYC 3 cut(s) 312, 1332, 2919
ErhI CCWWGG 6 cut(s) 1389, 3544, 3660, 3822, 4263, 4633
Esp3I CGTCTC 2 cut(s) 2262, 2630
FalI AAGNNNNNCTT 4 cut(s) 1758, 1790, 4380, 4412
FaqI GGGAC 2 cut(s) 2455, 4702
FauI CCCGC 1 cut(s) 128
FbaI TGATCA 1 cut(s) 3205
FblI GTMKAC 3 cut(s) 579, 2177, 5017
Fnu4HI GCNGC 7 cut(s) 2095, 2836, 2948, 2960, 3498, 3538, 4001
FriOI GRGCYC 3 cut(s) 312, 1332, 2919
Fsp4HI GCNGC 7 cut(s) 2095, 2836, 2948, 2960, 3498, 3538, 4001
GlaI GCGC 8 cut(s) 732, 3231, 3400, 3501, 4074, 4113, 4520, 4916
GluI GCNGC 7 cut(s) 2095, 2836, 2948, 2960, 3498, 3538, 4001
GsuI CTGGAG 5 cut(s) 1806, 2166, 2444, 2654, 3078
HaeIII GGCC 5 cut(s) 1416, 3365, 3537, 4171, 4958
HapII CCGG 4 cut(s) 1511, 2060, 3446, 4336
HgaI GACGC 2 cut(s) 669, 2647
HhaI GCGC 8 cut(s) 733, 3232, 3401, 3502, 4075, 4114, 4521, 4917
Hin1I GRCGYC 4 cut(s) 576, 680, 2555, 2787
Hin6I GCGC 8 cut(s) 731, 3230, 3399, 3500, 4073, 4112, 4519, 4915
HinP1I GCGC 8 cut(s) 731, 3230, 3399, 3500, 4073, 4112, 4519, 4915
HincII GTYRAC 3 cut(s) 561, 580, 2178
HindII GTYRAC 3 cut(s) 561, 580, 2178
HindIII AAGCTT 2 cut(s) 1320, 2360
HpaII CCGG 4 cut(s) 1511, 2060, 3446, 4336
HphI GGTGA 5 cut(s) 857, 1309, 2243, 3640, 5064
Hpy99I CGWCG 4 cut(s) 581, 911, 1852, 3523
HpyCH4IV ACGT 9 cut(s) 576, 1574, 1792, 2555, 2787, 2991, 3521, 4164, 4855
HpyF10VI GCNNNNNNNGC 8 cut(s) 439, 529, 1277, 1853, 2956, 4049, 4168, 4879
HpySE526I ACGT 9 cut(s) 576, 1574, 1792, 2555, 2787, 2991, 3521, 4164, 4855
Hsp92I GRCGYC 4 cut(s) 576, 680, 2555, 2787
HspAI GCGC 8 cut(s) 731, 3230, 3399, 3500, 4073, 4112, 4519, 4915
Kpn2I TCCGGA 1 cut(s) 1510
Ksp22I TGATCA 1 cut(s) 3205
LmnI GCTCC 5 cut(s) 2425, 2591, 2813, 4589, 4762
Lsp1109I GCAGC 6 cut(s) 2106, 2847, 2946, 2959, 3484, 3987
MaeII ACGT 9 cut(s) 576, 1574, 1792, 2555, 2787, 2991, 3521, 4164, 4855
MaeIII GTNAC 5 cut(s) 319, 2001, 3067, 3172, 4577
MbiI CCGCTC 1 cut(s) 152
MfeI CAATTG 6 cut(s) 213, 1041, 1187, 1908, 2469, 2954
MflI RGATCY 8 cut(s) 16, 2149, 2203, 2264, 3320, 3448, 3899, 5041
MhlI GDGCHC 8 cut(s) 312, 411, 1332, 2030, 2919, 4164, 4459, 5011
MlsI TGGCCA 1 cut(s) 4958
MluNI TGGCCA 1 cut(s) 4958
MlyI GAGTC 8 cut(s) 613, 2173, 2917, 3053, 3104, 3872, 3959, 4790
MmeI TCCRAC 4 cut(s) 1345, 2080, 2838, 4678
Mox20I TGGCCA 1 cut(s) 4958
Mph1103I ATGCAT 2 cut(s) 1306, 1728
MroI TCCGGA 1 cut(s) 1510
MroXI GAANNNNTTC 5 cut(s) 1346, 1758, 2346, 4613, 4670
MscI TGGCCA 1 cut(s) 4958
MslI CAYNNNNRTG 6 cut(s) 870, 2436, 2994, 3842, 4842, 5004
Msp20I TGGCCA 1 cut(s) 4958
MspA1I CMGCKG 1 cut(s) 4792
MspCI CTTAAG 1 cut(s) 2848
MspI CCGG 4 cut(s) 1511, 2060, 3446, 4336
MspR9I CCNGG 4 cut(s) 1785, 3936, 4337, 4960
MunI CAATTG 6 cut(s) 213, 1041, 1187, 1908, 2469, 2954
Mva1269I GAATGC 1 cut(s) 1306
MvaI CCWGG 3 cut(s) 1785, 3936, 4960
MvnI CGCG 5 cut(s) 737, 1589, 3743, 4152, 4915
MwoI GCNNNNNNNGC 8 cut(s) 439, 529, 1277, 1853, 2956, 4049, 4168, 4879
NciI CCSGG 1 cut(s) 4337
NcoI CCATGG 2 cut(s) 3660, 4263
NheI GCTAGC 1 cut(s) 3287
NlaIV GGNNCC 8 cut(s) 456, 613, 2027, 2199, 2443, 3450, 4322, 4456
NmeAIII GCCGAG 1 cut(s) 2741
NmuCI GTSAC 3 cut(s) 319, 3067, 3172
NruI TCGCGA 1 cut(s) 737
NsiI ATGCAT 2 cut(s) 1306, 1728
NspI RCATGY 4 cut(s) 1275, 2137, 3173, 4381
OliI CACNNNNGTG 1 cut(s) 3842
PaeI GCATGC 2 cut(s) 2137, 4381
PaeR7I CTCGAG 2 cut(s) 2918, 4877
PagI TCATGA 1 cut(s) 4830
PcsI WCGNNNNNNNCGW 1 cut(s) 4056
PctI GAATGC 1 cut(s) 1306
PdmI GAANNNNTTC 5 cut(s) 1346, 1758, 2346, 4613, 4670
PflFI GACNNNGTC 1 cut(s) 766
PfoI TCCNGGA 1 cut(s) 1783
PkrI GCNGC 7 cut(s) 2096, 2837, 2949, 2961, 3499, 3539, 4002
Ple19I CGATCG 1 cut(s) 4448
PleI GAGTC 8 cut(s) 612, 2173, 2917, 3053, 3104, 3871, 3958, 4790
PmaCI CACGTG 1 cut(s) 2992
PmlI CACGTG 1 cut(s) 2992
PpsI GAGTC 8 cut(s) 612, 2173, 2917, 3053, 3104, 3871, 3958, 4790
Ppu21I YACGTR 2 cut(s) 2992, 4856
PpuMI RGGWCCY 1 cut(s) 611
PshAI GACNNNNGTC 2 cut(s) 3074, 4563
Psp124BI GAGCTC 3 cut(s) 312, 1332, 2919
Psp1406I AACGTT 1 cut(s) 1574
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 3 cut(s) 1783, 3934, 4958
PspCI CACGTG 1 cut(s) 2992
PspGI CCWGG 3 cut(s) 1783, 3934, 4958
PspN4I GGNNCC 8 cut(s) 456, 613, 2027, 2199, 2443, 3450, 4322, 4456
PspPI GGNCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
PspPPI RGGWCCY 1 cut(s) 611
PspXI VCTCGAGB 1 cut(s) 4877
PstI CTGCAG 1 cut(s) 4648
PstNI CAGNNNCTG 1 cut(s) 2707
PsuI RGATCY 8 cut(s) 16, 2149, 2203, 2264, 3320, 3448, 3899, 5041
PsyI GACNNNGTC 1 cut(s) 766
PvuI CGATCG 1 cut(s) 4448
PvuII CAGCTG 1 cut(s) 4792
RruI TCGCGA 1 cut(s) 737
RseI CAYNNNNRTG 6 cut(s) 870, 2436, 2994, 3842, 4842, 5004
SacI GAGCTC 3 cut(s) 312, 1332, 2919
SalI GTCGAC 2 cut(s) 578, 2176
SatI GCNGC 7 cut(s) 2095, 2836, 2948, 2960, 3498, 3538, 4001
Sau96I GGNCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
ScaI AGTACT 1 cut(s) 4753
SchI GAGTC 8 cut(s) 613, 2173, 2917, 3053, 3104, 3872, 3959, 4790
ScrFI CCNGG 4 cut(s) 1785, 3936, 4337, 4960
SduI GDGCHC 8 cut(s) 312, 411, 1332, 2030, 2919, 4164, 4459, 5011
SfcI CTRYAG 4 cut(s) 2699, 3072, 3279, 4644
Sfr274I CTCGAG 2 cut(s) 2918, 4877
SinI GGWCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
SlaI CTCGAG 2 cut(s) 2918, 4877
SmiMI CAYNNNNRTG 6 cut(s) 870, 2436, 2994, 3842, 4842, 5004
SmlI CTYRAG 8 cut(s) 155, 197, 1949, 2848, 2918, 2932, 3860, 4877
SmoI CTYRAG 8 cut(s) 155, 197, 1949, 2848, 2918, 2932, 3860, 4877
SnaBI TACGTA 1 cut(s) 4856
SpeI ACTAGT 1 cut(s) 3841
SphI GCATGC 2 cut(s) 2137, 4381
SsiI CCGC 7 cut(s) 121, 150, 442, 719, 758, 3538, 4913
SspI AATATT 2 cut(s) 2355, 3909
SstI GAGCTC 3 cut(s) 312, 1332, 2919
StyD4I CCNGG 4 cut(s) 1783, 3934, 4335, 4958
StyI CCWWGG 6 cut(s) 1389, 3544, 3660, 3822, 4263, 4633
TaiI ACGT 9 cut(s) 579, 1577, 1795, 2558, 2790, 2994, 3524, 4167, 4858
TatI WGTACW 9 cut(s) 796, 1037, 1093, 1290, 1608, 1828, 3008, 3275, 4751
TauI GCSGC 1 cut(s) 3540
TseFI GTSAC 3 cut(s) 319, 3067, 3172
TseI GCWGC 6 cut(s) 2094, 2835, 2947, 2959, 3497, 4000
Tsp45I GTSAC 3 cut(s) 319, 3067, 3172
TspGWI ACGGA 2 cut(s) 2964, 3035
Tth111I GACNNNGTC 1 cut(s) 766
Vha464I CTTAAG 1 cut(s) 2848
VpaK11BI GGWCC 6 cut(s) 218, 611, 742, 2442, 3163, 3667
XagI CCTNNNNNAGG 3 cut(s) 1512, 2851, 3507
XceI RCATGY 4 cut(s) 1275, 2137, 3173, 4381
XcmI CCANNNNNNNNNTGG 1 cut(s) 3658
XhoI CTCGAG 2 cut(s) 2918, 4877
XmiI GTMKAC 3 cut(s) 579, 2177, 5017
XmnI GAANNNNTTC 5 cut(s) 1346, 1758, 2346, 4613, 4670
ZraI GACGTC 3 cut(s) 577, 2556, 2788
ZrmI AGTACT 1 cut(s) 4753
Zsp2I ATGCAT 2 cut(s) 1306, 1728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.