Rroxscaffold_3G00219850

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
2045592 .. 2052319
6728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219850.1

Sequence Viewer

Length: 4839 bp
ATGACTACCAAAATAGATCTTCCTTCGTCTTCTTGTCCTCCTCCATTCCGTAAATTGACATACGATGTGTTCCTCAGTTTCAGAGGTACAGATACCCGCACAAATTTCACAGACCATCTCTATGCCGCTCTCAAACAGAAAGGCATATACACATTTAGAGATGATGAAGAACTTAAGAGAGGGGAGACAATTGCTCCAAGTCTCTTGAAAGCAATTGAAGAGTCCAGATATGTAATTGTGGTGTTTTCTCAGAACTACGCCGATTCTGCGTGGTGTTTGGATGAGCTTGCAAAAGTCGCTGAATGCAGGAGAGCCATGGGGCAAACAGTCCTCCCTGTGTTCTATGATGTTAAGCCGTTTGAGGTACGAAGACAAAAAGGTGATCACTTTGAGAAAGCATTTCAGAAGCATCGAGAGCGGTTTAAAGAAGAACCAGACAAAGTAGAGAGGTGGAAAGATGCTCTTGCTGAAGTAGGCAATATCTCTGGATGGGATCTGAAAGATCGGTACCAATCCCAAGTCATTCAAGAAATTGTTGAAAAGATTTTCACCGAGTTAAATCAAATATTCACAATATATGAGGATTTAGTTGGGATGGATTCTCACCTGAATGAAATGCTTTCGTACTTAGACATTGGGTGTCCTGATGTTCGTATCATAGGGATTTGTGGTATGGGTGGTATCGGTAAGACAACTATTGCACAAGTGGTTTTTGAAAGGGTACAGGCCCAGTTTGAAGGTTGCAGCTTTCTTGAGAATGTTAGAGAGGTAATTGAAAAGCAAGGTGCGGTTCATTTACAACAGCAACTTCTTTCGGATTTGCTGGGAGGTAGTGTAAAATATAATGTACAGAACACTAGAATGGGAAAAAATATAATGAGGCAGAGGCTACATTCTAAAACGGTTCTTATCATTCTTGATGATGTGGACCAAGAAGAACAATTGGAAGCATTGTGTGATAGGGAATCGTTTGGTCTAGGGAGTAGAATCATCATAACTTCTAGAGATGAACATTTGCTCAGTGCAGTTGAAGGAGATAAAGTATATAAGGTGAATCCATTAACTGATGCTGAAGCTCTTCAGCTTTTTAGTATGAAAGCCTTCAAGAAAGACCAGCTGTTTGGAGAAGATTTTCTGAAGTTATCCAAAGAATTTTTGAAATATGCTAATGGCCTTCCACTAGCTATTAAAGTTTTGGGTTCTTCTGTTAAGGGTAGAAGAGTAGAGTTATGGTTAAGTGCATTGGATAGACTAAAAAACAATCCTCCAAAAGGGATTATTGATGTTCTTAAAGTTAGTTTCGATGGATTAGAAGAAACTGAACAGGAGATATTTTTGGACATCGCATGTTTCTTTAAAGGGGGGTACATAGATCATGTAACAAGAATACTACAAGGTAGTGACCATTGTCCGGACATTGATATAGCAGTTCTCATAGAGAAATCTTTGGTAACTCTGTTTGGAAGAAAATTGGGGATGCATGACTTGGTACAAGAATTGGGTCGGGAAATTGTTCGCCAAAAATGCCGTGAAGAGCCTGAAAAACGTAGCAGGTTGTGGCTTCCCAATGAAATCATCCATGTACTTCGTCAGAGCGAGGCGATGAGTGCAATTCAAAGCATATCCCTCCAATGTCCAACGGGAGACAATGTTGGTCACTCAATTGATAATGACTTCCCAAAAATGGACAGATTGAGGTTGCTCAAGATTTGGAATTTGAAGTGTACCGGAAACATCAGATATCTTTCTAATGAGTTGCAGTATCTTGAATGGCATGAGTGTCCTTTGGTTTCTTTCCCGTCAGATTTTCAACCGGATAAACTTGTGGAAGTTCACATGTATTTCAGCCGCATCGAACAACTATGGAGGGGAAAAAAAGGATGGAGCATGCTACGACATTTGGATCTGAGTGGTTCACCATACTTGAAGTCGACTCCAGACTTCACTGAGGTTCCAGATCTTGAAAAGTTGGTGCTTCAATTTTGTACGAGCTTGGTGGAGGTTCACCCGTCTCTTGGATCTCTGAAGAAACTTGTCTCTTTGAATATGACACATTGCAAGTCTGTTGAGAGCATTCCACCTTTCACTGCCCTTGAATTCCTTCAAATATTAAGGCTTTCATCCTGTTCAGCACTGAAGAAGTTTCCAGAAATTGAAGGAAATATGAAAAGCTTGCTGGAGCTTCATTTGGATGGGACCAGCATTGAGGAATTGCCTCCATCAATTGAACGCTTGACTGGTCTGACCATGTTGAATCTAACAGACTGTAAAAACCTTTTGCATCTACCCAATACCATTGGGTGTTTGACATCTTTGAAAAGTCTCTATCTAGCAGGTTGCTCCAAAATTGATGAGATGCCTGAGAATCTGAGTGGTATTAAATGTCTGGAGAAGCTTTTCATTGGTGGAACTTGCATAAGGGAGTTATCTTTCATTGTAGGCATGAAGCATCTGCAGTATCTATCCTGCCGAGGATGTAAATGTTTAGTTTCAGAATCATGGAAAGGTCTGTCTTCGTTATCGAGTTTGATAGAGCTAGACTTGAGTTATTGCAATCTGATCGATGGAGCAATTCTCAATGATCTTAGCAGCCTAATCTCCTTACGAAGGTTGGATTTAAGTGGTAATTGTTTTGTGCAATTACCTGAAAGTATCTCTCAACTCTCAAAGCTCGAGACCCTGGACTTGAGTAATTGCAGACAGCTTCAATTGCTGCCCAAGAAGCTTCCGTTAAGTCTTCAATTCGTGTATGCAAAAGATTGTACTTCACTGACAGATTACCCAAATCAAATCGAAGTATTGACTCCATTGGATTCGGGAGTGACTACCGTCAATTCCCTCAATTCTTCAGCACTTGGAGTCTCAGAAATTTCCAGAAGCTGGGTGCTTCCAAGAAATGAAGGGGAATCTCCACAGCTGCGTTTGAGACATCGGCATACAGATGGCAAACAAGTTGATCATTATTTGCCCCTGAGAAGCCTGTCGCTTCCAATAGAAAAAGAATTGCAGATATCTTCCAGTTCAAATTTCACTTTCCAACTTCCAAGAGATGAAATTCCAGAGTGGTTCAGCACTATATCTACCAGAAATCCCATATTAATCCCCATACCTCAAAATCTGACCGATGATAACAAGTGGAAGGGATTTGCCACGTGTGCTATATTCTCAGTCAAGGGGCATACTGCTCTGTCCCTTATTGAACCGGATCCCGATTTTCTTAATTACTCGTATCAAATCACATTGGAAACTGATGTTGTGCGCCTGGAACCATATGTGTTGGAGTGGGATGAATCCCTCCGCCGCTTTGGATCAAGTTCTCATCTGCTTATGATTTTCTATATATCTAGTTTGACATTTCCACAGTGGCGGTTAAATAAATCAACTGTGGTGAGTGCTATGTTTGAAACCACCAATCCATCCATGGTGGTCCAGAAATGTGGAATTCGTCTAGTCTATGAGCAAGATGCTAGATGGTTAGCCAGAATAGTCGGTGGGGATCAAATGATTTGGCTGAATAAAGTTGAGGACGCCTCTGTATTGGAGTCTGGCTGGCTTAGTGAATCTGAGAAATGGGAGAAATTCATTCCACCCCTGGAAGAAGAATCCACAGTTATTGTGCAGAGAAAGAACCTCGAGTCTGTTCTTCCAAGATACCTTGAGGCGCTAAACCGTTATTCTGCAACGTACAAATTTAACCTCAGAGGAAGCCCAGGGTGGTTTGGGTCGATTTGCCCTGATATGATGAGGTCAAATTTGGCCAGAGTATCAATTGAGCTGCCTCAAAATCTACACAAGAGCAAGAAGTGGATGGGATTTGCAATATACTTATCACTTGTAGAGGAAGCGGGGCAGACAATGAAAAAAGAGGACTTCTATTTGGTATTGGTTACACTAACAACTGGGGATGAATCTGCAGGTAGTACGGTGTCCCAAGAACTTATGCACGTCATGCCATTGTCAGAAGAACATCATCAACTTTTGGTTATTTACATGCCGCGGGCACAGATTCCCGAAGCGTTGTTCACTCAGACATTAACAACTGCAATGGACTTTTGCATCACTATCGTTAGCCCTCATGTAAAGGTTCAAAGAAGTGGGTTCCGTATTGTGTACCAGGAAGATATACAAGGGTTTGCTGATACAATTATCCGGTGCATGCAGAGGCAAGATTCTCTAAAATCTCACAATAAGTTGGTGGTAGAAGAATGGATACAGTTGATACGGTTGCAAGGTGCCACCATAGAGAGAATGACAGAACGGGATTCCAGAACCCCACGGGAAAAACAATTTGAATTGCACTTACTAAAATATAGAAATTGGGAATGGTCTGACCCTCGTCCTGTTTATTGTCACTTCGAGGGAGCTGAAATTTTCAAGTTGAAATGGTTCATACCTTTCATTAACCTGGGCAACTCTGCAGAAATCCAACTGCCTCTGAATGTGTTCGATGATGATAATTGGTTGGGGTTTGCCGTATGTTCACAGTTGTCCCGCGACCAATATCCAAACATTAGTCATGGCAGTATTGCTCTCAATTCAGAGAATGTTTGGCTTGTTTATCGTCTGGACTCTGATGTTGTTTGGCACGGCTTATTTGATTACAGGATGCAAGCAGAGATTAATATACTGGAGCCATCAGAATACTATGCTACTAGTTTCCATTATATACCGCGCACTTCGGTTCTTAGTAAGATGTGGAGGCAATGCAAGTTGGCCAGGATAACTATGTGGTTTTCTAGCCGCACATGCTCAGCTGTGCATAGTTGTGCCCTTCGTTTACTATTTAAGGAGGACGTTGAACATCTTGTAGAAACACTGACTCTCGCAGAATTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1612

Amino Acids

184.53

Weight (kDa)

5.82

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 21 - 192 6.2e-55 TIR domain
TIR_2 PF13676 23 - 124 2.3e-16 TIR domain
NB-ARC PF00931 203 - 371 2.1e-23 NB-ARC domain
WHD_ROQ1 PF23282 438 - 508 3.6e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 680 - 821 1.7e-12 Leucine-rich repeat region
LRR_13 PF23286 700 - 785 1.1e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 834 - 937 8.4e-10 Leucine-rich repeat region
C-JID PF20160 1014 - 1156 1.6e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 1542, 2324, 3905
Acc65I GGTACC 1 cut(s) 507
AccB1I GGYRCC 2 cut(s) 507, 4232
AccB7I CCANNNNNTGG 1 cut(s) 2880
AccBSI CCGCTC 2 cut(s) 128, 418
AccI GTMKAC 1 cut(s) 1931
AccII CGCG 3 cut(s) 3997, 4494, 4672
AccIII TCCGGA 1 cut(s) 1411
AclWI GGATC 7 cut(s) 501, 1911, 2026, 3200, 3213, 3316, 3504
AcoI YGGCCR 2 cut(s) 3756, 4713
AcuI CTGAAG 7 cut(s) 489, 1064, 1092, 1157, 2045, 2156, 2832
AcvI CACGTG 1 cut(s) 3153
AcyI GRCGYC 1 cut(s) 3528
AfiI CCNNNNNNNGG 6 cut(s) 1271, 1411, 1684, 2015, 2607, 2880
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 2 cut(s) 1836, 3152
AhlI ACTAGT 1 cut(s) 4652
AjiI CACGTC 1 cut(s) 3946
AjnI CCWGG 7 cut(s) 2679, 3261, 3591, 3709, 4113, 4404, 4715
Alw26I GTCTC 9 cut(s) 179, 206, 1638, 2016, 2041, 2327, 2669, 2866, 2920
AlwI GGATC 7 cut(s) 501, 1911, 2026, 3200, 3213, 3316, 3504
AlwNI CAGNNNCTG 1 cut(s) 2880
Ama87I CYCGRG 2 cut(s) 2672, 3632
Aor13HI TCCGGA 1 cut(s) 1411
AoxI GGCC 4 cut(s) 726, 1171, 3756, 4713
ApeKI GCWGC 5 cut(s) 744, 2589, 2713, 2917, 3775
ArsI GACNNNNNNTTYG 2 cut(s) 1103, 1135
AseI ATTAAT 2 cut(s) 3098, 4620
Asp700I GAANNNNTTC 8 cut(s) 1077, 1100, 1131, 1512, 2100, 2396, 4385, 4442
Asp718I GGTACC 1 cut(s) 507
AspLEI GCGC 3 cut(s) 3261, 3664, 4674
AspS9I GGNCC 4 cut(s) 727, 928, 2196, 3427
AsuHPI GGTGA 7 cut(s) 392, 541, 596, 1063, 1908, 1997, 3400
AvaI CYCGRG 2 cut(s) 2672, 3632
AvaII GGWCC 3 cut(s) 928, 2196, 3427
BaeGI GKGCMC 2 cut(s) 4003, 4771
BalI TGGCCA 2 cut(s) 3758, 4715
BamHI GGATCC 1 cut(s) 3205
BanI GGYRCC 2 cut(s) 507, 4232
BarI GAAGNNNNNNTAC 2 cut(s) 4194, 4226
BbrPI CACGTG 1 cut(s) 3153
BbsI GAAGAC 4 cut(s) 21, 376, 2505, 2729
BbvI GCAGC 5 cut(s) 756, 2601, 2700, 2904, 3762
BceAI ACGGC 4 cut(s) 340, 1512, 4457, 4603
BcgI CGANNNNNNTGC 4 cut(s) 2542, 2576, 4045, 4079
BciT130I CCWGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
BciVI GTATCC 1 cut(s) 4203
BclI TGATCA 2 cut(s) 382, 2956
BcoDI GTCTC 9 cut(s) 179, 206, 1638, 2016, 2041, 2327, 2669, 2866, 2920
BcuI ACTAGT 1 cut(s) 4652
BfmI CTRYAG 3 cut(s) 2453, 3912, 4416
BfoI RGCGCY 1 cut(s) 3665
BfrI CTTAAG 1 cut(s) 173
BfuAI ACCTGC 3 cut(s) 1542, 2324, 3905
BfuI GTATCC 1 cut(s) 4203
BglII AGATCT 2 cut(s) 16, 1957
BlpI GCTNAGC 1 cut(s) 4750
Bme1390I CCNGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
Bme18I GGWCC 3 cut(s) 928, 2196, 3427
BmeT110I CYCGRG 2 cut(s) 2672, 3632
BmgBI CACGTC 1 cut(s) 3946
BmgT120I GGNCC 4 cut(s) 727, 928, 2196, 3427
BmiI GGNNCC 8 cut(s) 509, 1953, 2197, 3207, 3267, 4100, 4234, 4632
BmrFI CCNGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
BmrI ACTGGG 2 cut(s) 724, 3909
BmuI ACTGGG 2 cut(s) 724, 3909
BoxI GACNNNNGTC 3 cut(s) 1407, 2828, 4335
BpiI GAAGAC 4 cut(s) 21, 376, 2505, 2729
BplI GAGNNNNNCTC 4 cut(s) 2559, 2591, 3515, 3547
BpmI CTGGAG 4 cut(s) 1920, 2198, 2408, 4649
Bpu1102I GCTNAGC 1 cut(s) 4750
BpuEI CTTGAG 5 cut(s) 773, 1688, 2563, 2707, 3677
Bsa29I ATCGAT 1 cut(s) 2562
BsaAI YACGTR 1 cut(s) 3153
BsaHI GRCGYC 1 cut(s) 3528
BsaI GGTCTC 1 cut(s) 2669
BsaWI WCCGGW 5 cut(s) 1411, 1727, 1813, 3202, 4149
BsaXI ACNNNNNCTCC 8 cut(s) 178, 208, 819, 849, 1026, 1056, 1635, 1665
Bsc4I CCNNNNNNNGG 6 cut(s) 1271, 1411, 1684, 2015, 2607, 2880
Bse1I ACTGG 5 cut(s) 730, 2242, 3018, 3904, 4632
Bse3DI GCAATG 3 cut(s) 2053, 4050, 4709
BseAI TCCGGA 1 cut(s) 1411
BseBI CCWGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
BseCI ATCGAT 1 cut(s) 2562
BseLI CCNNNNNNNGG 6 cut(s) 1271, 1411, 1684, 2015, 2607, 2880
BseMI GCAATG 3 cut(s) 2053, 4050, 4709
BseNI ACTGG 5 cut(s) 730, 2242, 3018, 3904, 4632
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 2 cut(s) 4003, 4771
BseXI GCAGC 5 cut(s) 756, 2601, 2700, 2904, 3762
BseYI CCCAGC 2 cut(s) 823, 2880
BsgI GTGCAG 2 cut(s) 1044, 3638
Bsh1236I CGCG 3 cut(s) 3997, 4494, 4672
BshFI GGCC 4 cut(s) 728, 1173, 3758, 4715
BshNI GGYRCC 2 cut(s) 507, 4232
BshVI ATCGAT 1 cut(s) 2562
BsiHKCI CYCGRG 2 cut(s) 2672, 3632
BsiSI CCGG 5 cut(s) 1412, 1728, 1814, 3203, 4150
BslFI GGGAC 4 cut(s) 2209, 3175, 3913, 4474
BslI CCNNNNNNNGG 6 cut(s) 1271, 1411, 1684, 2015, 2607, 2880
BsmAI GTCTC 9 cut(s) 179, 206, 1638, 2016, 2041, 2327, 2669, 2866, 2920
BsmBI CGTCTC 1 cut(s) 2016
BsmFI GGGAC 4 cut(s) 2209, 3175, 3913, 4474
BsmI GAATGC 2 cut(s) 308, 2073
BsnI GGCC 4 cut(s) 728, 1173, 3758, 4715
Bso31I GGTCTC 1 cut(s) 2669
BsoBI CYCGRG 2 cut(s) 2672, 3632
Bsp1286I GDGCHC 2 cut(s) 4003, 4771
Bsp13I TCCGGA 1 cut(s) 1411
Bsp1407I TGTACA 1 cut(s) 847
Bsp1720I GCTNAGC 1 cut(s) 4750
Bsp19I CCATGG 2 cut(s) 315, 3420
BspANI GGCC 4 cut(s) 728, 1173, 3758, 4715
BspDI ATCGAT 1 cut(s) 2562
BspEI TCCGGA 1 cut(s) 1411
BspFNI CGCG 3 cut(s) 3997, 4494, 4672
BspLI GGNNCC 8 cut(s) 509, 1953, 2197, 3207, 3267, 4100, 4234, 4632
BspMAI CTGCAG 3 cut(s) 2457, 3916, 4420
BspMI ACCTGC 3 cut(s) 1542, 2324, 3905
BspPI GGATC 7 cut(s) 501, 1911, 2026, 3200, 3213, 3316, 3504
BspQI GCTCTTC 2 cut(s) 1083, 1527
BspT107I GGYRCC 2 cut(s) 507, 4232
BspTI CTTAAG 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 2669
BsrBI CCGCTC 2 cut(s) 128, 418
BsrDI GCAATG 3 cut(s) 2053, 4050, 4709
BsrGI TGTACA 1 cut(s) 847
BsrI ACTGG 5 cut(s) 730, 2242, 3018, 3904, 4632
BssNI GRCGYC 1 cut(s) 3528
BssT1I CCWWGG 2 cut(s) 315, 3420
Bst2UI CCWGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
Bst6I CTCTTC 4 cut(s) 213, 1083, 1213, 1527
BstACI GRCGYC 1 cut(s) 3528
BstAFI CTTAAG 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 3949
BstAUI TGTACA 1 cut(s) 847
BstBAI YACGTR 1 cut(s) 3153
BstC8I GCNNGC 7 cut(s) 288, 1889, 2174, 3551, 3999, 4157, 4611
BstDSI CCRYGG 4 cut(s) 315, 3420, 3995, 4274
BstENI CCTNNNNNAGG 2 cut(s) 1269, 2605
BstFNI CGCG 3 cut(s) 3997, 4494, 4672
BstH2I RGCGCY 1 cut(s) 3665
BstHHI GCGC 3 cut(s) 3261, 3664, 4674
BstMAI GTCTC 9 cut(s) 179, 206, 1638, 2016, 2041, 2327, 2669, 2866, 2920
BstNI CCWGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
BstNSI RCATGY 6 cut(s) 1350, 1840, 1891, 3994, 4159, 4749
BstPAI GACNNNNGTC 3 cut(s) 1407, 2828, 4335
BstSCI CCNGG 7 cut(s) 2679, 3261, 3591, 3709, 4113, 4404, 4715
BstSFI CTRYAG 3 cut(s) 2453, 3912, 4416
BstSLI GKGCMC 2 cut(s) 4003, 4771
BstUI CGCG 3 cut(s) 3997, 4494, 4672
BstV1I GCAGC 5 cut(s) 756, 2601, 2700, 2904, 3762
BstV2I GAAGAC 4 cut(s) 21, 376, 2505, 2729
BstX2I RGATCY 6 cut(s) 16, 493, 1903, 1957, 2018, 3205
BstXI CCANNNNNNTGG 2 cut(s) 1121, 3437
BstYI RGATCY 6 cut(s) 16, 493, 1903, 1957, 2018, 3205
Bsu15I ATCGAT 1 cut(s) 2562
BsuI GTATCC 1 cut(s) 4203
BsuRI GGCC 4 cut(s) 728, 1173, 3758, 4715
BsuTUI ATCGAT 1 cut(s) 2562
BtgI CCRYGG 4 cut(s) 315, 3420, 3995, 4274
BtgZI GCGATG 2 cut(s) 1327, 1616
BtrI CACGTC 1 cut(s) 3946
BtsI GCAGTG 1 cut(s) 2085
BtsIMutI CAGTG 7 cut(s) 1027, 1944, 2085, 2132, 2768, 3368, 4814
BveI ACCTGC 3 cut(s) 1542, 2324, 3905
Cac8I GCNNGC 7 cut(s) 288, 1889, 2174, 3551, 3999, 4157, 4611
CaiI CAGNNNCTG 1 cut(s) 2880
CfoI GCGC 3 cut(s) 3261, 3664, 4674
Cfr13I GGNCC 4 cut(s) 727, 928, 2196, 3427
Cfr42I CCGCGG 1 cut(s) 3998
ClaI ATCGAT 1 cut(s) 2562
CseI GACGC 1 cut(s) 3536
CspCI CAANNNNNGTGG 2 cut(s) 3595, 3630
DraI TTTAAA 2 cut(s) 424, 1357
EaeI YGGCCR 2 cut(s) 3756, 4713
Eam1104I CTCTTC 4 cut(s) 213, 1083, 1213, 1527
EarI CTCTTC 4 cut(s) 213, 1083, 1213, 1527
EciI GGCGGA 1 cut(s) 3287
Eco130I CCWWGG 2 cut(s) 315, 3420
Eco31I GGTCTC 1 cut(s) 2669
Eco32I GATATC 2 cut(s) 1742, 3012
Eco47I GGWCC 3 cut(s) 928, 2196, 3427
Eco57I CTGAAG 7 cut(s) 489, 1064, 1092, 1157, 2045, 2156, 2832
Eco72I CACGTG 1 cut(s) 3153
Eco88I CYCGRG 2 cut(s) 2672, 3632
EcoNI CCTNNNNNAGG 2 cut(s) 1269, 2605
EcoRI GAATTC 2 cut(s) 2096, 3441
EcoRII CCWGG 7 cut(s) 2679, 3261, 3591, 3709, 4113, 4404, 4715
EcoRV GATATC 2 cut(s) 1742, 3012
EcoT14I CCWWGG 2 cut(s) 315, 3420
EcoT22I ATGCAT 1 cut(s) 1482
ErhI CCWWGG 2 cut(s) 315, 3420
Esp3I CGTCTC 1 cut(s) 2016
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 4 cut(s) 2209, 3175, 3913, 4474
FauI CCCGC 4 cut(s) 104, 3838, 3990, 4499
FauNDI CATATG 1 cut(s) 3271
FbaI TGATCA 2 cut(s) 382, 2956
FblI GTMKAC 1 cut(s) 1931
GlaI GCGC 3 cut(s) 3260, 3663, 4673
GsaI CCCAGC 2 cut(s) 827, 2884
GsuI CTGGAG 4 cut(s) 1920, 2198, 2408, 4649
HaeII RGCGCY 1 cut(s) 3665
HaeIII GGCC 4 cut(s) 728, 1173, 3758, 4715
HapII CCGG 5 cut(s) 1412, 1728, 1814, 3203, 4150
HgaI GACGC 1 cut(s) 3536
HhaI GCGC 3 cut(s) 3261, 3664, 4674
Hin1I GRCGYC 1 cut(s) 3528
Hin6I GCGC 3 cut(s) 3259, 3662, 4672
HinP1I GCGC 3 cut(s) 3259, 3662, 4672
HincII GTYRAC 1 cut(s) 1932
HindII GTYRAC 1 cut(s) 1932
HindIII AAGCTT 3 cut(s) 2170, 2393, 2723
HpaII CCGG 5 cut(s) 1412, 1728, 1814, 3203, 4150
HphI GGTGA 7 cut(s) 392, 541, 596, 1063, 1908, 1997, 3400
HpyCH4IV ACGT 5 cut(s) 1546, 3152, 3683, 3945, 4794
HpySE526I ACGT 5 cut(s) 1546, 3152, 3683, 3945, 4794
Hsp92I GRCGYC 1 cut(s) 3528
HspAI GCGC 3 cut(s) 3259, 3662, 4672
Kpn2I TCCGGA 1 cut(s) 1411
KpnI GGTACC 1 cut(s) 511
Ksp22I TGATCA 2 cut(s) 382, 2956
KspI CCGCGG 1 cut(s) 3998
LguI GCTCTTC 2 cut(s) 1083, 1527
LmnI GCTCC 7 cut(s) 199, 1884, 2179, 2345, 2567, 4361, 4630
Lsp1109I GCAGC 5 cut(s) 756, 2601, 2700, 2904, 3762
MaeII ACGT 5 cut(s) 1546, 3152, 3683, 3945, 4794
MaeIII GTNAC 7 cut(s) 1378, 1400, 1450, 1655, 2821, 3886, 4349
MbiI CCGCTC 2 cut(s) 128, 418
MfeI CAATTG 7 cut(s) 189, 213, 941, 1662, 2223, 2708, 3768
MflI RGATCY 6 cut(s) 16, 493, 1903, 1957, 2018, 3205
MhlI GDGCHC 2 cut(s) 4003, 4771
MlsI TGGCCA 2 cut(s) 3758, 4715
MluNI TGGCCA 2 cut(s) 3758, 4715
MlyI GAGTC 8 cut(s) 230, 1927, 2797, 2868, 3551, 3644, 4562, 4813
MmeI TCCRAC 5 cut(s) 1661, 2592, 3061, 3258, 4450
Mox20I TGGCCA 2 cut(s) 3758, 4715
Mph1103I ATGCAT 1 cut(s) 1482
MroI TCCGGA 1 cut(s) 1411
MroXI GAANNNNTTC 8 cut(s) 1077, 1100, 1131, 1512, 2100, 2396, 4385, 4442
MscI TGGCCA 2 cut(s) 3758, 4715
MslI CAYNNNNRTG 6 cut(s) 120, 609, 860, 2190, 2940, 4764
Msp20I TGGCCA 2 cut(s) 3758, 4715
MspA1I CMGCKG 4 cut(s) 1117, 2917, 3997, 4754
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 5 cut(s) 1412, 1728, 1814, 3203, 4150
MspR9I CCNGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
MunI CAATTG 7 cut(s) 189, 213, 941, 1662, 2223, 2708, 3768
Mva1269I GAATGC 2 cut(s) 308, 2073
MvaI CCWGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
MvnI CGCG 3 cut(s) 3997, 4494, 4672
NcoI CCATGG 2 cut(s) 315, 3420
NdeI CATATG 1 cut(s) 3271
NlaIV GGNNCC 8 cut(s) 509, 1953, 2197, 3207, 3267, 4100, 4234, 4632
NmeAIII GCCGAG 1 cut(s) 2495
NmuCI GTSAC 4 cut(s) 1400, 1655, 2821, 4349
NsiI ATGCAT 1 cut(s) 1482
NspI RCATGY 6 cut(s) 1350, 1840, 1891, 3994, 4159, 4749
PaeI GCATGC 2 cut(s) 1891, 4159
PaeR7I CTCGAG 2 cut(s) 2672, 3632
PasI CCCWGGG 1 cut(s) 3710
PciI ACATGT 1 cut(s) 1836
PciSI GCTCTTC 2 cut(s) 1083, 1527
PctI GAATGC 2 cut(s) 308, 2073
PdmI GAANNNNTTC 8 cut(s) 1077, 1100, 1131, 1512, 2100, 2396, 4385, 4442
PflMI CCANNNNNTGG 1 cut(s) 2880
PleI GAGTC 8 cut(s) 229, 1927, 2797, 2867, 3550, 3643, 4562, 4813
PmaCI CACGTG 1 cut(s) 3153
PmlI CACGTG 1 cut(s) 3153
PpsI GAGTC 8 cut(s) 229, 1927, 2797, 2867, 3550, 3643, 4562, 4813
Ppu21I YACGTR 1 cut(s) 3153
PscI ACATGT 1 cut(s) 1836
PshAI GACNNNNGTC 3 cut(s) 1407, 2828, 4335
PshBI ATTAAT 2 cut(s) 3098, 4620
Psp6I CCWGG 7 cut(s) 2679, 3261, 3591, 3709, 4113, 4404, 4715
PspCI CACGTG 1 cut(s) 3153
PspFI CCCAGC 2 cut(s) 823, 2880
PspGI CCWGG 7 cut(s) 2679, 3261, 3591, 3709, 4113, 4404, 4715
PspN4I GGNNCC 8 cut(s) 509, 1953, 2197, 3207, 3267, 4100, 4234, 4632
PspPI GGNCC 4 cut(s) 727, 928, 2196, 3427
PspXI VCTCGAGB 1 cut(s) 3632
PstI CTGCAG 3 cut(s) 2457, 3916, 4420
PstNI CAGNNNCTG 1 cut(s) 2880
PsuI RGATCY 6 cut(s) 16, 493, 1903, 1957, 2018, 3205
PvuII CAGCTG 3 cut(s) 1117, 2917, 4754
RseI CAYNNNNRTG 6 cut(s) 120, 609, 860, 2190, 2940, 4764
SacII CCGCGG 1 cut(s) 3998
SalI GTCGAC 1 cut(s) 1930
SapI GCTCTTC 2 cut(s) 1083, 1527
Sau96I GGNCC 4 cut(s) 727, 928, 2196, 3427
SchI GAGTC 8 cut(s) 230, 1927, 2797, 2868, 3551, 3644, 4562, 4813
ScrFI CCNGG 7 cut(s) 2681, 3263, 3593, 3711, 4115, 4406, 4717
SduI GDGCHC 2 cut(s) 4003, 4771
SfcI CTRYAG 3 cut(s) 2453, 3912, 4416
Sfr274I CTCGAG 2 cut(s) 2672, 3632
Sfr303I CCGCGG 1 cut(s) 3998
SgrBI CCGCGG 1 cut(s) 3998
SinI GGWCC 3 cut(s) 928, 2196, 3427
SlaI CTCGAG 2 cut(s) 2672, 3632
SmiMI CAYNNNNRTG 6 cut(s) 120, 609, 860, 2190, 2940, 4764
SmlI CTYRAG 8 cut(s) 173, 752, 1703, 2542, 2672, 2686, 3632, 3656
SmoI CTYRAG 8 cut(s) 173, 752, 1703, 2542, 2672, 2686, 3632, 3656
SpeI ACTAGT 1 cut(s) 4652
SphI GCATGC 2 cut(s) 1891, 4159
SspI AATATT 2 cut(s) 567, 2109
StyD4I CCNGG 7 cut(s) 2679, 3261, 3591, 3709, 4113, 4404, 4715
StyI CCWWGG 2 cut(s) 315, 3420
TaiI ACGT 5 cut(s) 1549, 3155, 3686, 3948, 4797
TaqII GACCGA 1 cut(s) 3137
TatI WGTACW 3 cut(s) 847, 1582, 2762
TauI GCSGC 5 cut(s) 128, 1851, 3303, 3997, 4743
TscAI CASTG 7 cut(s) 1027, 1951, 2092, 2139, 2775, 3368, 4821
TseFI GTSAC 4 cut(s) 1400, 1655, 2821, 4349
TseI GCWGC 5 cut(s) 744, 2589, 2713, 2917, 3775
Tsp45I GTSAC 4 cut(s) 1400, 1655, 2821, 4349
TspGWI ACGGA 3 cut(s) 38, 2718, 4091
TspRI CASTG 7 cut(s) 1027, 1951, 2092, 2139, 2775, 3368, 4821
Van91I CCANNNNNTGG 1 cut(s) 2880
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 3 cut(s) 928, 2196, 3427
VspI ATTAAT 2 cut(s) 3098, 4620
XagI CCTNNNNNAGG 2 cut(s) 1269, 2605
XbaI TCTAGA 1 cut(s) 1001
XceI RCATGY 6 cut(s) 1350, 1840, 1891, 3994, 4159, 4749
XcmI CCANNNNNNNNNTGG 1 cut(s) 3418
XhoI CTCGAG 2 cut(s) 2672, 3632
XmiI GTMKAC 1 cut(s) 1931
XmnI GAANNNNTTC 8 cut(s) 1077, 1100, 1131, 1512, 2100, 2396, 4385, 4442
Zsp2I ATGCAT 1 cut(s) 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.