FvH4_5g38620

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000129
Physical Location & Seq
Forward (+)
28549877 .. 28550576
700 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38620.t1

Sequence Viewer

Length: 573 bp
ATGACGGAACGGAAATCCAGAACCGCACAAGCAACCTTCAGAAATTGGGACTGGTCTGACCCTCGTCTTGCTGATTGTTTGTTCGAGAGAGTTGAAATCTCCAAGTTGAAATGGTTCGTGCCTTTCATCAACCAAGGCAACTCTGCCGAAATCCAACTGCCTCCGATTGTGTTTGATGATGATAACTGGTTGGGGTTTGCTGATGTTGTGCTTACTTGTCGACTGGACTCTGATGTTGCTTGGCACGGCTTATTTGATTGCAATATGCGATCAGTTTTTAAGCTACTCGAGACACCTAAAGATGAATTATATGATGTGACTGTGTTCCTTTATATACCGCGCACTAAAGTTCTTAGTAAGATGTGGAGGCAATGCAAATTGGCCAGGATAACTGTGTGGTTCTCCAGCCCATGCGCAGCAGTAGTGCATACTTGTGCCCTTCGTCTACTATTTAAGGACGACATTGAACATCTAGTTGAGACGCTCACTATTGCATCTGACGAAACCCTTATTTCGTCTGTCTCACTGCTGTTTGATAGGGGTATTAGACAACAGATATCAGCCGTCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

191

Amino Acids

21.94

Weight (kDa)

5.63

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 415
AccI GTMKAC 2 cut(s) 220, 445
AccII CGCG 1 cut(s) 340
AciI CCGC 2 cut(s) 24, 338
AcoI YGGCCR 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 22
AgsI TTSAA 3 cut(s) 95, 109, 467
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 3 cut(s) 284, 473, 526
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 416
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 2 cut(s) 342, 416
AvaI CYCGRG 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 439
BalI TGGCCA 1 cut(s) 383
BbvI GCAGC 1 cut(s) 428
BceAI ACGGC 2 cut(s) 262, 548
BciT130I CCWGG 1 cut(s) 385
BcoDI GTCTC 3 cut(s) 284, 473, 526
BfaI CTAG 1 cut(s) 473
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 503
BoxI GACNNNNGTC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 133
Bse1I ACTGG 3 cut(s) 56, 191, 228
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 377
BseNI ACTGG 3 cut(s) 56, 191, 228
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 287
BslFI GGGAC 1 cut(s) 62
BsmAI GTCTC 3 cut(s) 284, 473, 526
BsmBI CGTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 2 cut(s) 24, 338
BspANI GGCC 1 cut(s) 383
BspFNI CGCG 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 377
BsrI ACTGG 3 cut(s) 56, 191, 228
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 322, 394
BstDEI CTNAG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 340
BstHHI GCGC 2 cut(s) 342, 416
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 3 cut(s) 284, 473, 526
BstMBI GATC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 385
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 428
BsuRI GGCC 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 524
CfoI GCGC 2 cut(s) 342, 416
CseI GACGC 1 cut(s) 490
CviAII CATG 1 cut(s) 411
CviJI RGCY 5 cut(s) 249, 283, 383, 408, 563
CviKI_1 RGCY 5 cut(s) 249, 283, 383, 408, 563
DdeI CTNAG 1 cut(s) 353
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 133
Eco32I GATATC 1 cut(s) 558
Eco57I CTGAAG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 383
EcoRV GATATC 1 cut(s) 558
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 1 cut(s) 414
FaiI YATR 7 cut(s) 266, 310, 312, 333, 335, 412, 429
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 410
FblI GTMKAC 2 cut(s) 220, 445
Fnu4HI GCNGC 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 473
FspI TGCGCA 1 cut(s) 415
GlaI GCGC 2 cut(s) 341, 415
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 388
HaeIII GGCC 1 cut(s) 383
HgaI GACGC 1 cut(s) 490
HhaI GCGC 2 cut(s) 342, 416
Hin1II CATG 1 cut(s) 414
Hin6I GCGC 2 cut(s) 340, 414
HinP1I GCGC 2 cut(s) 340, 414
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HinfI GANTC 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 221, 446
Hpy188I TCNGA 5 cut(s) 41, 58, 165, 232, 499
Hpy188III TCNNGA 3 cut(s) 18, 85, 289
Hpy8I GTNNAC 2 cut(s) 221, 446
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 2 cut(s) 46, 449
HpyCH4III ACNGT 2 cut(s) 322, 394
HpyCH4V TGCA 4 cut(s) 261, 375, 427, 494
HpyF3I CTNAG 1 cut(s) 353
Hsp92II CATG 1 cut(s) 414
HspAI GCGC 2 cut(s) 340, 414
Kzo9I GATC 1 cut(s) 269
LpnPI CCDG 7 cut(s) 31, 37, 172, 209, 370, 397, 418
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 1 cut(s) 503
MaeI CTAG 1 cut(s) 473
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 439
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 3 cut(s) 43, 305, 377
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 3 cut(s) 72, 171, 360
Mox20I TGGCCA 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 383
MseI TTAA 2 cut(s) 279, 453
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 1 cut(s) 340
NdeII GATC 1 cut(s) 269
NlaIII CATG 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 316
NsbI TGCGCA 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PshAI GACNNNNGTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 432
SalI GTCGAC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 279, 453
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 1 cut(s) 269
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 385
SduI GDGCHC 1 cut(s) 439
SetI ASST 3 cut(s) 38, 285, 298
SfaNI GCATC 1 cut(s) 503
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 3 cut(s) 43, 305, 377
SsiI CCGC 2 cut(s) 24, 338
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 322, 394
TaqI TCGA 3 cut(s) 84, 220, 288
TasI AATT 3 cut(s) 43, 305, 377
Tru1I TTAA 2 cut(s) 279, 453
Tru9I TTAA 2 cut(s) 279, 453
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 115, 318
TspGWI ACGGA 2 cut(s) 20, 25
TspRI CASTG 1 cut(s) 531
XhoI CTCGAG 1 cut(s) 287
XmiI GTMKAC 2 cut(s) 220, 445
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.