Rorug02G0237100

DNA excision repair protein ERCC-6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000129
Physical Location & Seq
Forward (+)
23680131 .. 23686748
6618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0237100.1

Sequence Viewer

Length: 2439 bp
ATGTTAAACCACCACCGCAATGCCCTCAGACACTTCCACCCGCCGCCGCTATTCTCAATCTCCTCCCTCTCTCTTTCCACCACCACCACCACAAAACCAACCCCAACTCACCCTCACTCCAATCTCCTCACACTCACCTCCAACGCCCAAACCCTCCACCAAACCAAGCAACTCCACGCTCTCTCTCTCCTCCACGCCCTACTCCCCCACAGCGTCTCCCTCTGCGCCTCCCTCATGCTCACCTACGCCACCTTCGACTCCCCCGACGCCTCTCGCCGCCTCTTTAATCAAACCGTTAAGTATTGCCGCACCGCTTTCTTGTGGAACACGCTCATAAGAGCCTGCTCCATTGCTCAGGTGGACGATCGGTTTCGGACTTACAATCAAATGGTTCGGAGCGGCGTGCAGCTCGATGATCACAGCTTTCCTTTCGTCATCAAGGCCTGTTCGGACTCTATGGAGGTGAAGAAGGGGATGGAGGTTCATGGGGTGGTGGTTAAACTAGGGTTTGATTCGGATGTTTACGTGGGGAACACGCTTCTTTCGTTTTATGGTAACTGTGGGAAACTAAGGGATGCACGGAAGGTGTTTGATGAAATGCCTGAGAGAGATGTTGTGTCGTGGAATACGATTATCGGGGTGTTTTCGGTGAATGGGGGTTACGTTGAGGCACTGCATTGTTATAGGGAGATGAATTTGGGAATTGGGTGTAGGCCGAATGTTGTGAGTGTTATTAGTGCATTGCCAGTTTGTGCAGAGCTTGCGGATGAGCTGATGGCGGTTCAGATACATTGCTATGTTGTGAAGTCTGGTTTGGGTACGCAGGTGACTATTGGGAATGCATTGGTTGATGTGTATGGGAAGTGTTGGAATGTGAAGGGGTCGAAACAGGTTTTTGATGAGATGAGTCAGCGGAATGAGGTTTCTTGGAATGCAGCTATTACTAGTCTTTCTTATGTGGGGAATAACATGGAAGCATTGGATACATTTAGGTTGATGATTGATGAAGGGGTTAAACCAAACTCTGTCACCATTTCCAGCATGTTACCAGTTTTGGTTGAACTAGAATTATTTGGGTTTGGTAAAGAACTCCATGGTTTCTGTATAAGAATGGGTATTGAATCAGACGTTTTTATTGCCAACTCATTAATTGATATGTATGCAAAATCAGGCCATTCACATGAGGCGTCCAATGTGTTCCGAGAGATGGATGAAAGGAATATTGTTTCTTGGAATGCCATGATTGCTAATTTTGCTCAAAACAGGCTTGAGTTGGAAGCAATTGGACTTGTGAGACAAATGCAAGCTCATGGTGAAGTTCCCAATTCTGTCACCATCACAAATCTTCTTCCAGCTTGTGCACGGCTGGGTTCCCTTTGCCTTGGGAAAGAAATTCATGCAAGGACAATTCGCATGGGATCTGCCTCTGATTTGTTTGTCTCTAATGCTCTCACAGACATGTACGCAAAATGTGGCTGGCTAGATGTTGCTCGAAATATCTTTAACATATCCCTTAGAGACGAGGTGTCCTACAACACACTGATAATAGGTTATTCTCAGACCACAGATTGCTCTGAATCTCTAAGTTTGTTTTCTGAAATGAAGCTGGTGGGCATGATGCATGACATTGTATCATTTGTGGGAGTTATATCAGCTTGCGCAAATCTAACTGCAGTCAAGCAAGGCAAAGAGATTCATGGATCTGTAATAAGAAAGCTTTTTGACTCTCATCTCTTTGTTGCAAACTCACTTTTGGATTTCTATACCAAATCTGGCCGAATTGATCTTGCTACTAAGGTCTTTGACCGCATTTCCAACAAGGATGTAGCCTCTTGGAATACTATGATTTTGGGATACGGAATGCTAGGTGAGCTGGACACTGCAATCAGTTTCTTTGAAGCAATGAGGGAAGATGGCGTAGAATATGATTCAGTTTCATACATTGCAGTTTTGTCATCTTGTAGTCATGGGGGGTTAGTTGAGAAGGGCAAAAGATACTTTGAGGCGATGCTGGCACGAAATATTGAGCCTACACAGAAGCACTATGCGTGCATGGTTGATCTCCTTGGCCGGGCTGGCCTCATGGAAGAAGCAGTAGAACTTATTAAAGGCATGCCAATTGTACCAGATGCCAACATTTGGGGTTCTTTACTTGGGGCATGTCGAATCCATGGGAACATAGAGTTGGCGAGTTGGGCAGCGGAGTATCTATTTAAGCTAAAACCTGACCATTGTGGGTACTATATACTGCTTTCTAACATGTATGCAGAAGCAGGTAGATGGGAAGATGTAAAGAGGGTGAGGGAAATGATGAAATCAAGGGGATTGAAGAAAAATCCTGCCTACAGTTGGGTTCAGATTCGAGGCGAGGTGCATGCTTTTGGAGTTGGAGAGAGACTGGAGAGACTGAGTTCAGATTGCTGGCTGGTAGAGTCCTAA

Protein Analysis

812

Amino Acids

90.36

Weight (kDa)

6.32

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 306 - 350 1.7e-07 PPR repeat family
PPR_2 PF13041 406 - 455 7.1e-07 PPR repeat family
PPR_2 PF13041 507 - 555 2.5e-06 PPR repeat family
PPR_2 PF13041 607 - 655 7.7e-09 PPR repeat family
PPR PF01535 611 - 640 3.1e-06 PPR repeat
E_motif PF20431 724 - 786 1.7e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 814
Acc16I TGCGCA 1 cut(s) 1660
Acc36I ACCTGC 2 cut(s) 814, 2264
AccB7I CCANNNNNTGG 1 cut(s) 2139
AccBSI CCGCTC 1 cut(s) 399
AclWI GGATC 2 cut(s) 1426, 1708
AcoI YGGCCR 2 cut(s) 1774, 2068
AcsI RAATTY 2 cut(s) 694, 1392
AcyI GRCGYC 2 cut(s) 267, 1187
AfaI GTAC 4 cut(s) 820, 1463, 2124, 2240
AfiI CCNNNNNNNGG 4 cut(s) 1207, 2071, 2139, 2349
AflIII ACRYGT 2 cut(s) 1458, 2259
AgsI TTSAA 4 cut(s) 1061, 1121, 1898, 2329
AhdI GACNNNNNGTC 1 cut(s) 1525
AhlI ACTAGT 1 cut(s) 944
AjuI GAANNNNNNNTTGG 4 cut(s) 797, 829, 2168, 2200
Alw21I GWGCWC 1 cut(s) 1363
Alw26I GTCTC 6 cut(s) 220, 1288, 1444, 1512, 2389, 2398
Alw44I GTGCAC 1 cut(s) 1359
AlwI GGATC 2 cut(s) 1426, 1708
AoxI GGCC 6 cut(s) 441, 713, 1171, 1774, 2068, 2077
ApaLI GTGCAC 1 cut(s) 1359
ApeKI GCWGC 3 cut(s) 406, 935, 2198
ApoI RAATTY 2 cut(s) 694, 1392
AseI ATTAAT 1 cut(s) 1148
AspLEI GCGC 2 cut(s) 227, 1661
AsuC2I CCSGG 1 cut(s) 2072
BaeGI GKGCMC 1 cut(s) 1363
BaeI ACNNNNGTAYC 2 cut(s) 810, 843
Bbv12I GWGCWC 1 cut(s) 1363
BbvI GCAGC 3 cut(s) 418, 947, 2210
BccI CCATC 6 cut(s) 469, 769, 1201, 1343, 1907, 2274
BceAI ACGGC 1 cut(s) 1379
BcgI CGANNNNNNTGC 2 cut(s) 2357, 2391
BciVI GTATCC 2 cut(s) 976, 1847
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 1 cut(s) 2072
BcoDI GTCTC 6 cut(s) 220, 1288, 1444, 1512, 2389, 2398
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 5 cut(s) 503, 945, 1064, 1481, 1865
BfmI CTRYAG 2 cut(s) 1671, 2344
BfuAI ACCTGC 2 cut(s) 814, 2264
BfuI GTATCC 2 cut(s) 976, 1847
BglI GCCNNNNNGGC 1 cut(s) 2076
BisI GCNGC 8 cut(s) 44, 47, 277, 307, 400, 407, 936, 2199
BlsI GCNGC 8 cut(s) 45, 48, 278, 308, 401, 408, 937, 2200
Bme1390I CCNGG 1 cut(s) 2072
BmeRI GACNNNNNGTC 1 cut(s) 1525
BmiI GGNNCC 1 cut(s) 1372
BmrFI CCNGG 1 cut(s) 2072
BmsI GCATC 4 cut(s) 565, 1608, 1998, 2119
BpmI CTGGAG 1 cut(s) 2420
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 1289
BpuMI CCSGG 1 cut(s) 2072
BsaAI YACGTR 1 cut(s) 526
BsaHI GRCGYC 2 cut(s) 267, 1187
BsaJI CCNNGG 4 cut(s) 1093, 1381, 2065, 2170
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 200, 230
Bsc4I CCNNNNNNNGG 4 cut(s) 1207, 2071, 2139, 2349
Bse1I ACTGG 3 cut(s) 746, 1049, 2403
Bse3DI GCAATG 6 cut(s) 25, 348, 740, 790, 1908, 1941
BseDI CCNNGG 4 cut(s) 1093, 1381, 2065, 2170
BseGI GGATG 6 cut(s) 480, 523, 580, 772, 1216, 1828
BseLI CCNNNNNNNGG 4 cut(s) 1207, 2071, 2139, 2349
BseMI GCAATG 6 cut(s) 25, 348, 740, 790, 1908, 1941
BseMII CTCAG 5 cut(s) 40, 368, 594, 1571, 2399
BseNI ACTGG 3 cut(s) 746, 1049, 2403
BseRI GAGGAG 3 cut(s) 52, 116, 179
BseSI GKGCMC 1 cut(s) 1363
BseXI GCAGC 3 cut(s) 418, 947, 2210
BseYI CCCAGC 1 cut(s) 1366
BsgI GTGCAG 2 cut(s) 425, 774
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 1363
BsiSI CCGG 1 cut(s) 2071
BslI CCNNNNNNNGG 4 cut(s) 1207, 2071, 2139, 2349
BsmAI GTCTC 6 cut(s) 220, 1288, 1444, 1512, 2389, 2398
BsmBI CGTCTC 2 cut(s) 220, 1512
BsmI GAATGC 4 cut(s) 844, 937, 1240, 1866
BsnI GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
Bsp1286I GDGCHC 1 cut(s) 1363
Bsp143I GATC 6 cut(s) 364, 415, 1418, 1700, 1783, 2059
Bsp19I CCATGG 2 cut(s) 1093, 2170
BspANI GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
BspCNI CTCAG 5 cut(s) 39, 367, 595, 1570, 2400
BspLI GGNNCC 1 cut(s) 1372
BspMAI CTGCAG 1 cut(s) 1675
BspMI ACCTGC 2 cut(s) 814, 2264
BspPI GGATC 2 cut(s) 1426, 1708
BsrBI CCGCTC 1 cut(s) 399
BsrDI GCAATG 6 cut(s) 25, 348, 740, 790, 1908, 1941
BsrI ACTGG 3 cut(s) 746, 1049, 2403
BssECI CCNNGG 4 cut(s) 1093, 1381, 2065, 2170
BssMI GATC 6 cut(s) 364, 415, 1418, 1700, 1783, 2059
BssNI GRCGYC 2 cut(s) 267, 1187
BssT1I CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
Bst4CI ACNGT 3 cut(s) 295, 560, 2348
BstACI GRCGYC 2 cut(s) 267, 1187
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBAI YACGTR 1 cut(s) 526
BstDEI CTNAG 9 cut(s) 26, 354, 569, 603, 1514, 1557, 1583, 1794, 2408
BstDSI CCRYGG 2 cut(s) 1093, 2170
BstF5I GGATG 6 cut(s) 480, 523, 580, 772, 1216, 1828
BstHHI GCGC 2 cut(s) 227, 1661
BstKTI GATC 6 cut(s) 367, 418, 1421, 1703, 1786, 2062
BstMAI GTCTC 6 cut(s) 220, 1288, 1444, 1512, 2389, 2398
BstMBI GATC 6 cut(s) 364, 415, 1418, 1700, 1783, 2059
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 7 cut(s) 761, 1244, 1253, 1870, 2012, 2076, 2195
BstNSI RCATGY 6 cut(s) 1045, 1462, 2116, 2163, 2263, 2378
BstSCI CCNGG 1 cut(s) 2070
BstSFI CTRYAG 2 cut(s) 1671, 2344
BstSLI GKGCMC 1 cut(s) 1363
BstV1I GCAGC 3 cut(s) 418, 947, 2210
BstX2I RGATCY 2 cut(s) 1418, 1700
BstYI RGATCY 2 cut(s) 1418, 1700
BsuI GTATCC 2 cut(s) 976, 1847
BsuRI GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
BtgI CCRYGG 2 cut(s) 1093, 2170
BtgZI GCGATG 1 cut(s) 2021
BtsCI GGATG 6 cut(s) 480, 523, 580, 772, 1216, 1828
BtsI GCAGTG 2 cut(s) 671, 1878
BtsIMutI CAGTG 3 cut(s) 671, 1538, 1878
BveI ACCTGC 2 cut(s) 814, 2264
CfoI GCGC 2 cut(s) 227, 1661
CseI GACGC 3 cut(s) 202, 275, 1176
Csp6I GTAC 4 cut(s) 819, 1462, 2123, 2239
CviQI GTAC 4 cut(s) 819, 1462, 2123, 2239
DdeI CTNAG 9 cut(s) 26, 354, 569, 603, 1514, 1557, 1583, 1794, 2408
DpnI GATC 6 cut(s) 366, 417, 1420, 1702, 1785, 2061
DpnII GATC 6 cut(s) 364, 415, 1418, 1700, 1783, 2059
DriI GACNNNNNGTC 1 cut(s) 1525
EaeI YGGCCR 2 cut(s) 1774, 2068
Eam1105I GACNNNNNGTC 1 cut(s) 1525
Eco130I CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
Eco147I AGGCCT 1 cut(s) 443
EcoT14I CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
EcoT22I ATGCAT 2 cut(s) 844, 1623
ErhI CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
Esp3I CGTCTC 2 cut(s) 220, 1512
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 8 cut(s) 44, 47, 277, 307, 400, 407, 936, 2199
FokI GGATG 6 cut(s) 487, 530, 587, 779, 1223, 1835
Fsp4HI GCNGC 8 cut(s) 44, 47, 277, 307, 400, 407, 936, 2199
FspBI CTAG 5 cut(s) 503, 945, 1064, 1481, 1865
FspI TGCGCA 1 cut(s) 1660
GlaI GCGC 2 cut(s) 226, 1660
GluI GCNGC 8 cut(s) 44, 47, 277, 307, 400, 407, 936, 2199
GsaI CCCAGC 1 cut(s) 1370
GsuI CTGGAG 1 cut(s) 2420
HaeIII GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
HapII CCGG 1 cut(s) 2071
HgaI GACGC 3 cut(s) 202, 275, 1176
HhaI GCGC 2 cut(s) 227, 1661
Hin1I GRCGYC 2 cut(s) 267, 1187
Hin6I GCGC 2 cut(s) 225, 1659
HinP1I GCGC 2 cut(s) 225, 1659
HindIII AAGCTT 1 cut(s) 1715
HpaII CCGG 1 cut(s) 2071
Hpy166II GTNNAC 3 cut(s) 361, 523, 1361
Hpy8I GTNNAC 3 cut(s) 361, 523, 1361
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 6 cut(s) 262, 463, 577, 871, 1001, 1978
HpyCH4III ACNGT 3 cut(s) 295, 560, 2348
HpyCH4IV ACGT 3 cut(s) 525, 663, 1128
HpyF10VI GCNNNNNNNGC 7 cut(s) 761, 1244, 1253, 1870, 2012, 2076, 2195
HpyF3I CTNAG 9 cut(s) 26, 354, 569, 603, 1514, 1557, 1583, 1794, 2408
HpySE526I ACGT 3 cut(s) 525, 663, 1128
Hsp92I GRCGYC 2 cut(s) 267, 1187
HspAI GCGC 2 cut(s) 225, 1659
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 6 cut(s) 364, 415, 1418, 1700, 1783, 2059
LmnI GCTCC 2 cut(s) 350, 396
Lsp1109I GCAGC 3 cut(s) 418, 947, 2210
LweI GCATC 4 cut(s) 565, 1608, 1998, 2119
MaeI CTAG 5 cut(s) 503, 945, 1064, 1481, 1865
MaeII ACGT 3 cut(s) 525, 663, 1128
MaeIII GTNAC 6 cut(s) 554, 659, 826, 1027, 1044, 1330
MalI GATC 6 cut(s) 366, 417, 1420, 1702, 1785, 2061
MbiI CCGCTC 1 cut(s) 399
MboI GATC 6 cut(s) 364, 415, 1418, 1700, 1783, 2059
MboII GAAGA 7 cut(s) 478, 1337, 1340, 1922, 2099, 2297, 2341
MfeI CAATTG 2 cut(s) 1281, 2118
MflI RGATCY 2 cut(s) 1418, 1700
MhlI GDGCHC 1 cut(s) 1363
MlyI GAGTC 4 cut(s) 251, 446, 916, 1718
MmeI TCCRAC 5 cut(s) 165, 848, 1254, 1839, 2368
Mph1103I ATGCAT 2 cut(s) 844, 1623
MseI TTAA 9 cut(s) 5, 285, 297, 498, 1014, 1148, 1503, 2106, 2214
MslI CAYNNNNRTG 4 cut(s) 18, 795, 1179, 1457
MspA1I CMGCKG 2 cut(s) 913, 2201
MspI CCGG 1 cut(s) 2071
MspR9I CCNGG 1 cut(s) 2072
MunI CAATTG 2 cut(s) 1281, 2118
Mva1269I GAATGC 4 cut(s) 844, 937, 1240, 1866
MwoI GCNNNNNNNGC 7 cut(s) 761, 1244, 1253, 1870, 2012, 2076, 2195
NciI CCSGG 1 cut(s) 2072
NcoI CCATGG 2 cut(s) 1093, 2170
NdeII GATC 6 cut(s) 364, 415, 1418, 1700, 1783, 2059
NlaIV GGNNCC 1 cut(s) 1372
NmuCI GTSAC 3 cut(s) 826, 1027, 1330
NsbI TGCGCA 1 cut(s) 1660
NsiI ATGCAT 2 cut(s) 844, 1623
NspI RCATGY 6 cut(s) 1045, 1462, 2116, 2163, 2263, 2378
PaeI GCATGC 2 cut(s) 2116, 2378
PaqCI CACCTGC 1 cut(s) 814
PceI AGGCCT 1 cut(s) 443
PciI ACATGT 2 cut(s) 1458, 2259
PcsI WCGNNNNNNNCGW 4 cut(s) 252, 261, 542, 626
PctI GAATGC 4 cut(s) 844, 937, 1240, 1866
PfeI GAWTC 7 cut(s) 512, 1121, 1577, 1693, 1928, 2166, 2359
PflMI CCANNNNNTGG 1 cut(s) 2139
PkrI GCNGC 8 cut(s) 45, 48, 278, 308, 401, 408, 937, 2200
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 4 cut(s) 251, 446, 915, 1718
PpsI GAGTC 4 cut(s) 251, 446, 915, 1718
Ppu21I YACGTR 1 cut(s) 526
PscI ACATGT 2 cut(s) 1458, 2259
PshBI ATTAAT 1 cut(s) 1148
PspFI CCCAGC 1 cut(s) 1366
PspN4I GGNNCC 1 cut(s) 1372
PstI CTGCAG 1 cut(s) 1675
PsuI RGATCY 2 cut(s) 1418, 1700
PvuI CGATCG 1 cut(s) 367
RsaI GTAC 4 cut(s) 820, 1463, 2124, 2240
RsaNI GTAC 4 cut(s) 819, 1462, 2123, 2239
RseI CAYNNNNRTG 4 cut(s) 18, 795, 1179, 1457
SaqAI TTAA 9 cut(s) 5, 285, 297, 498, 1014, 1148, 1503, 2106, 2214
SatI GCNGC 8 cut(s) 44, 47, 277, 307, 400, 407, 936, 2199
Sau3AI GATC 6 cut(s) 364, 415, 1418, 1700, 1783, 2059
SchI GAGTC 4 cut(s) 251, 446, 916, 1718
ScrFI CCNGG 1 cut(s) 2072
SduI GDGCHC 1 cut(s) 1363
SfaNI GCATC 4 cut(s) 565, 1608, 1998, 2119
SfcI CTRYAG 2 cut(s) 1671, 2344
SfiI GGCCNNNNNGGCC 1 cut(s) 2076
SmiMI CAYNNNNRTG 4 cut(s) 18, 795, 1179, 1457
SmlI CTYRAG 1 cut(s) 1268
SmoI CTYRAG 1 cut(s) 1268
SpeI ACTAGT 1 cut(s) 944
SphI GCATGC 2 cut(s) 2116, 2378
SseBI AGGCCT 1 cut(s) 443
SspI AATATT 2 cut(s) 1222, 2023
SspMI CTAG 5 cut(s) 503, 945, 1064, 1481, 1865
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 2070
StyI CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
TaaI ACNGT 3 cut(s) 295, 560, 2348
TaiI ACGT 3 cut(s) 528, 666, 1131
TaqI TCGA 6 cut(s) 255, 411, 884, 1492, 2164, 2362
TauI GCSGC 5 cut(s) 46, 49, 279, 309, 402
TfiI GAWTC 7 cut(s) 512, 1121, 1577, 1693, 1928, 2166, 2359
Tru1I TTAA 9 cut(s) 5, 285, 297, 498, 1014, 1148, 1503, 2106, 2214
Tru9I TTAA 9 cut(s) 5, 285, 297, 498, 1014, 1148, 1503, 2106, 2214
TscAI CASTG 3 cut(s) 678, 1545, 1885
TseFI GTSAC 3 cut(s) 826, 1027, 1330
TseI GCWGC 3 cut(s) 406, 935, 2198
Tsp45I GTSAC 3 cut(s) 826, 1027, 1330
TspGWI ACGGA 2 cut(s) 595, 1872
TspRI CASTG 3 cut(s) 678, 1545, 1885
Van91I CCANNNNNTGG 1 cut(s) 2139
VneI GTGCAC 1 cut(s) 1359
VspI ATTAAT 1 cut(s) 1148
XapI RAATTY 2 cut(s) 694, 1392
XceI RCATGY 6 cut(s) 1045, 1462, 2116, 2163, 2263, 2378
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 5 cut(s) 503, 945, 1064, 1481, 1865
Zsp2I ATGCAT 2 cut(s) 844, 1623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.