RchiOBHm_Chr6g0250791

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000129
Physical Location & Seq
Forward (+)
6155194 .. 6156837
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22480

Sequence Viewer

Length: 711 bp
ATGGTTCTTATCGTTCTTGATGATGTGGATGAACTAGACCAATTGACAGCATTGTGTGGTGATGCTAGTTGCTTCGGGTCAGGGAGTAGAATCATCATAACATCAAGAAATGAGCATTTGCTGAAAGTATTTAGTGTGGACATCACATACAATGTCAATGCATTATCTGATGTTGAGGCTCTTCAGCTGTTTTGTTCGAGAGCCTTCAAGAAGGACCAGGTTGGAGAAGATTTTCTCAGGCTTTCTAAGGAGTTTGTAAAATATGCTGCTGGCCTTCCATTAGCTCTTCAAGTATTGGCTGCATCTCTCCGTGGTAAGGAAAAAACTCTGTGGTCAAGTGCATTGGATAGACTAAAACAGAAACCTGATAGAGAAATTATGAATGTGCTTAAAGTAAGTTATGATGGACTAGATTACTTAGAAAAGGCTATTTTTTTAGACATTGCATGCTTCTTTAAAGGAGTGAGCATGGATCGGGTAACAAGACTATCGATCGATTATTATATGGACATTGTTATACAAGTTCTTCTGGAAAAATCTCTAGTAACTCTGGTTGGAAGAAAATTATGGATGCATGACTTGCTACAACAATTGGGTGAAACAATTGTTTTCCAAGAATGTCCTGAAGAGCCTGGCAATTGTAGCAGGTTGTGGCTTCCGCAAGAAATCATCCATGTACTTGAGAAGAATAAGGGTTCAAGTGTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

236

Amino Acids

26.68

Weight (kDa)

5.2

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 2 - 72 6.9e-07 NB-ARC domain
WHD_ROQ1 PF23282 141 - 203 1.8e-13 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 636
AciI CCGC 1 cut(s) 659
AclWI GGATC 1 cut(s) 480
AcuI CTGAAG 2 cut(s) 167, 645
AfaI GTAC 2 cut(s) 678, 705
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 3 cut(s) 208, 290, 699
AjnI CCWGG 2 cut(s) 216, 631
AluBI AGCT 2 cut(s) 187, 284
AluI AGCT 2 cut(s) 187, 284
AlwI GGATC 1 cut(s) 480
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 266, 299
Asp700I GAANNNNTTC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 71, 608
AvaII GGWCC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 253, 286
BccI CCATC 1 cut(s) 398
BciT130I CCWGG 2 cut(s) 218, 633
BfaI CTAG 4 cut(s) 35, 66, 410, 542
BfuAI ACCTGC 1 cut(s) 636
BisI GCNGC 2 cut(s) 267, 300
BlsI GCNGC 2 cut(s) 268, 301
Bme1390I CCNGG 2 cut(s) 218, 633
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 218, 633
BmsI GCATC 3 cut(s) 52, 311, 561
BpuEI CTTGAG 1 cut(s) 701
Bsa29I ATCGAT 2 cut(s) 491, 495
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 2 cut(s) 218, 633
BseCI ATCGAT 2 cut(s) 491, 495
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 3 cut(s) 34, 576, 669
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 253, 286
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 1 cut(s) 273
BshVI ATCGAT 2 cut(s) 491, 495
BsiEI CGRYCG 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 316
BsnI GGCC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 472, 492
BspACI CCGC 1 cut(s) 659
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 249
BspDI ATCGAT 2 cut(s) 491, 495
BspMI ACCTGC 1 cut(s) 636
BspPI GGATC 1 cut(s) 480
BspQI GCTCTTC 3 cut(s) 186, 291, 621
BsrDI GCAATG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 472, 492
Bst2UI CCWGG 2 cut(s) 218, 633
Bst6I CTCTTC 3 cut(s) 186, 291, 621
BstAPI GCANNNNNTGC 1 cut(s) 580
BstC8I GCNNGC 2 cut(s) 271, 448
BstDEI CTNAG 3 cut(s) 236, 246, 418
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 3 cut(s) 34, 576, 669
BstKTI GATC 2 cut(s) 475, 495
BstMBI GATC 2 cut(s) 472, 492
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 2 cut(s) 580, 642
BstNI CCWGG 2 cut(s) 218, 633
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 216, 631
BstV1I GCAGC 2 cut(s) 253, 286
Bsu15I ATCGAT 2 cut(s) 491, 495
BsuRI GGCC 1 cut(s) 273
BsuTUI ATCGAT 2 cut(s) 491, 495
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 34, 576, 669
BveI ACCTGC 1 cut(s) 636
Cac8I GCNNGC 2 cut(s) 271, 448
Cfr13I GGNCC 1 cut(s) 214
ClaI ATCGAT 2 cut(s) 491, 495
CsiI ACCWGGT 1 cut(s) 216
Csp6I GTAC 2 cut(s) 677, 704
CviAII CATG 4 cut(s) 447, 469, 575, 674
CviQI GTAC 2 cut(s) 677, 704
DdeI CTNAG 3 cut(s) 236, 246, 418
DpnI GATC 2 cut(s) 474, 494
DpnII GATC 2 cut(s) 472, 492
DraI TTTAAA 1 cut(s) 457
Eam1104I CTCTTC 3 cut(s) 186, 291, 621
EarI CTCTTC 3 cut(s) 186, 291, 621
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 2 cut(s) 167, 645
EcoRII CCWGG 2 cut(s) 216, 631
EcoT22I ATGCAT 2 cut(s) 163, 576
FaeI CATG 4 cut(s) 450, 472, 578, 677
FatI CATG 4 cut(s) 446, 468, 574, 673
Fnu4HI GCNGC 2 cut(s) 267, 300
FokI GGATG 3 cut(s) 41, 583, 656
Fsp4HI GCNGC 2 cut(s) 267, 300
FspBI CTAG 4 cut(s) 35, 66, 410, 542
GluI GCNGC 2 cut(s) 267, 300
HaeIII GGCC 1 cut(s) 273
Hin1II CATG 4 cut(s) 450, 472, 578, 677
HinfI GANTC 1 cut(s) 90
HphI GGTGA 2 cut(s) 71, 608
Hpy166II GTNNAC 2 cut(s) 139, 704
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 6 cut(s) 17, 105, 198, 208, 530, 623
Hpy8I GTNNAC 2 cut(s) 139, 704
HpyAV CCTTC 3 cut(s) 205, 214, 284
HpyCH4V TGCA 5 cut(s) 161, 302, 341, 446, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 580, 642
HpyF3I CTNAG 3 cut(s) 236, 246, 418
Hsp92II CATG 4 cut(s) 450, 472, 578, 677
Kzo9I GATC 2 cut(s) 472, 492
LguI GCTCTTC 3 cut(s) 186, 291, 621
Lsp1109I GCAGC 2 cut(s) 253, 286
LweI GCATC 3 cut(s) 52, 311, 561
MabI ACCWGGT 1 cut(s) 216
MaeI CTAG 4 cut(s) 35, 66, 410, 542
MaeIII GTNAC 2 cut(s) 478, 544
MalI GATC 2 cut(s) 474, 494
MboI GATC 2 cut(s) 472, 492
MboII GAAGA 7 cut(s) 173, 239, 278, 518, 570, 638, 697
MfeI CAATTG 4 cut(s) 41, 590, 603, 637
MluCI AATT 6 cut(s) 41, 375, 563, 590, 603, 637
MmeI TCCRAC 2 cut(s) 202, 535
MnlI CCTC 1 cut(s) 169
Mph1103I ATGCAT 2 cut(s) 163, 576
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 2 cut(s) 390, 456
MspA1I CMGCKG 1 cut(s) 187
MspR9I CCNGG 2 cut(s) 218, 633
MunI CAATTG 4 cut(s) 41, 590, 603, 637
MvaI CCWGG 2 cut(s) 218, 633
MwoI GCNNNNNNNGC 2 cut(s) 580, 642
NdeII GATC 2 cut(s) 472, 492
NlaIII CATG 4 cut(s) 450, 472, 578, 677
NsiI ATGCAT 2 cut(s) 163, 576
NspI RCATGY 1 cut(s) 450
PaeI GCATGC 1 cut(s) 450
PciSI GCTCTTC 3 cut(s) 186, 291, 621
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 268, 301
Ple19I CGATCG 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 216, 631
PspGI CCWGG 2 cut(s) 216, 631
PspPI GGNCC 1 cut(s) 214
PvuI CGATCG 1 cut(s) 495
PvuII CAGCTG 1 cut(s) 187
RsaI GTAC 2 cut(s) 678, 705
RsaNI GTAC 2 cut(s) 677, 704
SapI GCTCTTC 3 cut(s) 186, 291, 621
SaqAI TTAA 2 cut(s) 390, 456
SatI GCNGC 2 cut(s) 267, 300
Sau3AI GATC 2 cut(s) 472, 492
Sau96I GGNCC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 218, 633
SetI ASST 5 cut(s) 189, 222, 286, 367, 650
SexAI ACCWGGT 1 cut(s) 216
SfaNI GCATC 3 cut(s) 52, 311, 561
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SphI GCATGC 1 cut(s) 450
Sse9I AATT 6 cut(s) 41, 375, 563, 590, 603, 637
SsiI CCGC 1 cut(s) 659
SspMI CTAG 4 cut(s) 35, 66, 410, 542
StyD4I CCNGG 2 cut(s) 216, 631
TaqI TCGA 3 cut(s) 197, 491, 495
TasI AATT 6 cut(s) 41, 375, 563, 590, 603, 637
TatI WGTACW 2 cut(s) 676, 703
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 2 cut(s) 390, 456
Tru9I TTAA 2 cut(s) 390, 456
TseI GCWGC 2 cut(s) 266, 299
TspDTI ATGAA 2 cut(s) 45, 395
TspGWI ACGGA 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 214
XceI RCATGY 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 4 cut(s) 35, 66, 410, 542
Zsp2I ATGCAT 2 cut(s) 163, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.