Rmu_sc0001921.1_g000030

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001921.1
OG0000129
Physical Location & Seq
Forward (+)
167944 .. 168393
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001921.1_g000030.1.cds

Sequence Viewer

Length: 450 bp
atgcttttgtgttctacgttgcagctgcctctctgctcagttttgaggcacatacatcctgcagatgaaattccagagtggttcggcactacatccaccagaaatcccatatcaatctcgatacctcaaaatctggccgatgataacaagtggcagggatttagcgcgtgcgctatattctcagtcaaagggcatactgatatctcccttattgaaccggatcctgattttcttaattactcgtatcaaatcactttggaaactgatgttatgcgtctggaaccaatagtggtggaacccgtatcaggccgtcttggatcaagttctcatctgcttgtgatcttctatatagatcgtttcggggtcccacagagagggttaaatcgatcaactgtggattttcagaatatcctggcccaacgccgatttaccgattatgcgtctgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

149

Amino Acids

16.83

Weight (kDa)

5.09

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AclWI GGATC 3 cut(s) 215, 228, 325
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 305, 374
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
AlwI GGATC 3 cut(s) 215, 228, 325
AoxI GGCC 3 cut(s) 135, 307, 414
ApeKI GCWGC 2 cut(s) 22, 25
ApoI RAATTY 1 cut(s) 69
AspLEI GCGC 2 cut(s) 167, 173
AspS9I GGNCC 2 cut(s) 364, 415
AvaII GGWCC 1 cut(s) 364
BamHI GGATCC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 12, 34
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 23, 26
BlsI GCNGC 2 cut(s) 24, 27
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 2 cut(s) 364, 415
BmiI GGNNCC 5 cut(s) 222, 282, 297, 365, 366
BmrFI CCNGG 1 cut(s) 413
Bsa29I ATCGAT 1 cut(s) 385
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 374
BseBI CCWGG 1 cut(s) 413
BseCI ATCGAT 1 cut(s) 385
BseGI GGATG 2 cut(s) 55, 92
BseLI CCNNNNNNNGG 2 cut(s) 305, 374
BseMII CTCAG 2 cut(s) 51, 195
BseXI GCAGC 2 cut(s) 12, 34
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 3 cut(s) 137, 309, 416
BshVI ATCGAT 1 cut(s) 385
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 2 cut(s) 305, 374
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 3 cut(s) 137, 309, 416
Bsp143I GATC 5 cut(s) 220, 317, 339, 352, 386
BspANI GGCC 3 cut(s) 137, 309, 416
BspCNI CTCAG 2 cut(s) 50, 194
BspDI ATCGAT 1 cut(s) 385
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 5 cut(s) 222, 282, 297, 365, 366
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 3 cut(s) 215, 228, 325
BssMI GATC 5 cut(s) 220, 317, 339, 352, 386
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 37, 181
BstF5I GGATG 2 cut(s) 55, 92
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 2 cut(s) 167, 173
BstKTI GATC 5 cut(s) 223, 320, 342, 355, 389
BstMBI GATC 5 cut(s) 220, 317, 339, 352, 386
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 60
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 12, 34
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
Bsu15I ATCGAT 1 cut(s) 385
BsuRI GGCC 3 cut(s) 137, 309, 416
BsuTUI ATCGAT 1 cut(s) 385
BtsCI GGATG 2 cut(s) 55, 92
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 2 cut(s) 167, 173
Cfr13I GGNCC 2 cut(s) 364, 415
ClaI ATCGAT 1 cut(s) 385
CseI GACGC 2 cut(s) 263, 429
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviJI RGCY 4 cut(s) 25, 137, 309, 416
CviKI_1 RGCY 4 cut(s) 25, 137, 309, 416
DdeI CTNAG 2 cut(s) 37, 181
DpnI GATC 5 cut(s) 222, 319, 341, 354, 388
DpnII GATC 5 cut(s) 220, 317, 339, 352, 386
EaeI YGGCCR 1 cut(s) 135
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 411
EcoRV GATATC 1 cut(s) 202
FaiI YATR 8 cut(s) 53, 110, 176, 195, 272, 348, 350, 438
FaqI GGGAC 1 cut(s) 350
Fnu4HI GCNGC 2 cut(s) 23, 26
FokI GGATG 2 cut(s) 42, 79
Fsp4HI GCNGC 2 cut(s) 23, 26
GlaI GCGC 2 cut(s) 166, 172
GluI GCNGC 2 cut(s) 23, 26
HaeIII GGCC 3 cut(s) 137, 309, 416
HapII CCGG 1 cut(s) 218
HgaI GACGC 2 cut(s) 263, 429
HhaI GCGC 2 cut(s) 167, 173
Hin6I GCGC 2 cut(s) 165, 171
HinP1I GCGC 2 cut(s) 165, 171
HpaII CCGG 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 405, 445
Hpy188III TCNNGA 4 cut(s) 74, 118, 224, 278
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 22, 62
HpyF3I CTNAG 2 cut(s) 37, 181
HpySE526I ACGT 1 cut(s) 17
HspAI GCGC 2 cut(s) 165, 171
KflI GGGWCCC 1 cut(s) 364
Kzo9I GATC 5 cut(s) 220, 317, 339, 352, 386
Lsp1109I GCAGC 2 cut(s) 12, 34
MaeII ACGT 1 cut(s) 17
MalI GATC 5 cut(s) 222, 319, 341, 354, 388
MboI GATC 5 cut(s) 220, 317, 339, 352, 386
MboII GAAGA 1 cut(s) 334
MflI RGATCY 1 cut(s) 220
MluCI AATT 2 cut(s) 69, 235
MnlI CCTC 4 cut(s) 39, 39, 135, 368
MseI TTAA 2 cut(s) 234, 380
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 167
NdeII GATC 5 cut(s) 220, 317, 339, 352, 386
NlaIV GGNNCC 5 cut(s) 222, 282, 297, 365, 366
PkrI GCNGC 2 cut(s) 24, 27
PpuMI RGGWCCY 1 cut(s) 364
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 5 cut(s) 222, 282, 297, 365, 366
PspPI GGNCC 2 cut(s) 364, 415
PspPPI RGGWCCY 1 cut(s) 364
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 25
SaqAI TTAA 2 cut(s) 234, 380
SatI GCNGC 2 cut(s) 23, 26
Sau3AI GATC 5 cut(s) 220, 317, 339, 352, 386
Sau96I GGNCC 2 cut(s) 364, 415
ScrFI CCNGG 1 cut(s) 413
SetI ASST 3 cut(s) 20, 27, 127
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 364
Sse9I AATT 2 cut(s) 69, 235
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 119, 385
TasI AATT 2 cut(s) 69, 235
Tru1I TTAA 2 cut(s) 234, 380
Tru9I TTAA 2 cut(s) 234, 380
TseI GCWGC 2 cut(s) 22, 25
TspDTI ATGAA 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.