Rroxscaffold_3G00236140

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000129
Physical Location & Seq
Reverse (-)
23335291 .. 23343389
8099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236140.1

Sequence Viewer

Length: 903 bp
ATGTACAGAACACTAAAATGGGAAAAAAACATAATGAGGCAGAGACTACATACTAAAATGGTTCTGATCATTCTTGATGACGTGGACCAAGAAGAACAATTGGAAGCACTGTGTGAGCATGAATCATTTGGTCCAGGGAGTAGAATCATCATAACTTCAAGAGATGAACATTTGCTCAGTGCAGTTGAAGGAGATAAAGTGTACAATGTGAATCCATTAACTGATGCTGAAGCTCTTCAGCTCTTTAGTATGAAAGCCTTTAAGAAAGACCAGCTGGTTGGAGAAGAAGTTCTCAAGCTATCCAAGGAATTTTTGAAATATGCTAATGGCCTTCCATTAGCTATTAAAGTTTTAGGTTCTTCTGTTAAGGGTAGAAGTGTAGAATTGTGGTCAAGTGCATTAGATAGACTAAAAAAAAGTCCTGATAAAAAAATTATTAATTTTCTCAAGGTTAGTTTTGATGGATTAGAACCAAGGGAACAGAAAAAATTTTTGGACATCGCATGTTTCCTTAAAGGGGTGAACATAGATCGTGTAAGAAGAATACTACAGGGTAGTGATGCCCACTGTCCAGACTTTGATATACAGGTTCTCCTAGACAAATGTATGGTAACTCTATTTGGAAAAAAATTGTGGATGCATGATTTGATACAAGAATTGGGTTGGGAAGTTGTTCGCCAAGAAAGCCATGATGAACCTGGAAAACATAGTAGATTGTGGCTTTCAAGTGAGATCATTGATGTACTTGATCAGAGTAAGGCAACGAGTGCAGTTCAAAGCATACTCCTCCAAGGTCCAACTAAAGATGATGTGGTTTACTCAGTTAACGAGTCTTTCTCAAATATGGACAGATTAAGATTGCTCAAAATTTGGAATGTGAAGTTTTCTGGAAACATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

300

Amino Acids

34.4

Weight (kDa)

7.06

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 11 - 90 3.9e-11 NB-ARC domain
WHD_ROQ1 PF23282 159 - 229 4.8e-14 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 308, 488, 867
AcuI CTGAAG 2 cut(s) 221, 249
AdeI CACNNNGTG 1 cut(s) 113
AfaI GTAC 3 cut(s) 5, 203, 744
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 5 cut(s) 159, 188, 316, 726, 776
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 2 cut(s) 133, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 5 cut(s) 233, 241, 274, 298, 341
AluI AGCT 5 cut(s) 233, 241, 274, 298, 341
Alw26I GTCTC 1 cut(s) 37
AoxI GGCC 1 cut(s) 328
ApoI RAATTY 3 cut(s) 308, 488, 867
AseI ATTAAT 1 cut(s) 438
Asp700I GAANNNNTTC 3 cut(s) 234, 288, 672
AspS9I GGNCC 3 cut(s) 85, 131, 794
AsuHPI GGTGA 1 cut(s) 532
AvaII GGWCC 3 cut(s) 85, 131, 794
BccI CCATC 1 cut(s) 455
BciT130I CCWGG 2 cut(s) 135, 699
BclI TGATCA 2 cut(s) 66, 748
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 548
Bme1390I CCNGG 2 cut(s) 135, 699
Bme18I GGWCC 3 cut(s) 85, 131, 794
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 85, 131, 794
BmrFI CCNGG 2 cut(s) 135, 699
BmsI GCATC 3 cut(s) 214, 550, 627
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BpuEI CTTGAG 2 cut(s) 278, 431
BsaJI CCNNGG 4 cut(s) 134, 303, 473, 790
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 273, 303, 576, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 517
BseBI CCWGG 2 cut(s) 135, 699
BseDI CCNNGG 4 cut(s) 134, 303, 473, 790
BseGI GGATG 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMII CTCAG 2 cut(s) 190, 834
BseRI GAGGAG 1 cut(s) 776
BsgI GTGCAG 2 cut(s) 201, 789
BshFI GGCC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 1 cut(s) 37
BsnI GGCC 1 cut(s) 330
Bsp1407I TGTACA 2 cut(s) 3, 201
Bsp143I GATC 4 cut(s) 66, 529, 732, 748
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 189, 833
BspQI GCTCTTC 1 cut(s) 240
BsrGI TGTACA 2 cut(s) 3, 201
BssECI CCNNGG 4 cut(s) 134, 303, 473, 790
BssMI GATC 4 cut(s) 66, 529, 732, 748
BssT1I CCWWGG 3 cut(s) 303, 473, 790
Bst2UI CCWGG 2 cut(s) 135, 699
Bst4CI ACNGT 2 cut(s) 111, 569
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 767
BstAUI TGTACA 2 cut(s) 3, 201
BstDEI CTNAG 2 cut(s) 176, 820
BstF5I GGATG 1 cut(s) 642
BstKTI GATC 4 cut(s) 69, 532, 735, 751
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 4 cut(s) 66, 529, 732, 748
BstMWI GCNNNNNNNGC 2 cut(s) 684, 767
BstNI CCWGG 2 cut(s) 135, 699
BstNSI RCATGY 1 cut(s) 507
BstSCI CCNGG 2 cut(s) 133, 697
BstSFI CTRYAG 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 278
BsuRI GGCC 1 cut(s) 330
BtgZI GCGATG 1 cut(s) 484
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 107, 184, 565
Cfr13I GGNCC 3 cut(s) 85, 131, 794
Csp6I GTAC 3 cut(s) 4, 202, 743
CviAII CATG 4 cut(s) 119, 504, 641, 689
CviJI RGCY 9 cut(s) 233, 241, 257, 274, 298, 330, 341, 687, 721
CviKI_1 RGCY 9 cut(s) 233, 241, 257, 274, 298, 330, 341, 687, 721
CviQI GTAC 3 cut(s) 4, 202, 743
DdeI CTNAG 2 cut(s) 176, 820
DpnI GATC 4 cut(s) 68, 531, 734, 750
DpnII GATC 4 cut(s) 66, 529, 732, 748
DraIII CACNNNGTG 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 3 cut(s) 303, 473, 790
Eco47I GGWCC 3 cut(s) 85, 131, 794
Eco57I CTGAAG 2 cut(s) 221, 249
EcoRII CCWGG 2 cut(s) 133, 697
EcoT14I CCWWGG 3 cut(s) 303, 473, 790
EcoT22I ATGCAT 1 cut(s) 642
ErhI CCWWGG 3 cut(s) 303, 473, 790
FaeI CATG 4 cut(s) 122, 507, 644, 692
FatI CATG 4 cut(s) 118, 503, 640, 688
FbaI TGATCA 2 cut(s) 66, 748
FokI GGATG 1 cut(s) 649
FspBI CTAG 1 cut(s) 596
HaeIII GGCC 1 cut(s) 330
Hin1II CATG 4 cut(s) 122, 507, 644, 692
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HinfI GANTC 4 cut(s) 122, 144, 211, 830
HpaI GTTAAC 1 cut(s) 826
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 5 cut(s) 85, 202, 523, 817, 826
Hpy188I TCNGA 2 cut(s) 66, 753
Hpy188III TCNNGA 5 cut(s) 74, 159, 422, 572, 888
Hpy8I GTNNAC 5 cut(s) 85, 202, 523, 817, 826
HpyAV CCTTC 2 cut(s) 182, 341
HpyCH4III ACNGT 2 cut(s) 111, 569
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 4 cut(s) 182, 398, 640, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 684, 767
HpyF3I CTNAG 2 cut(s) 176, 820
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 4 cut(s) 122, 507, 644, 692
Ksp22I TGATCA 2 cut(s) 66, 748
KspAI GTTAAC 1 cut(s) 826
Kzo9I GATC 4 cut(s) 66, 529, 732, 748
LguI GCTCTTC 1 cut(s) 240
LweI GCATC 3 cut(s) 214, 550, 627
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 610
MalI GATC 4 cut(s) 68, 531, 734, 750
MboI GATC 4 cut(s) 66, 529, 732, 748
MboII GAAGA 5 cut(s) 104, 227, 296, 351, 552
MfeI CAATTG 1 cut(s) 98
MluCI AATT 9 cut(s) 98, 308, 383, 432, 439, 488, 629, 656, 867
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 2 cut(s) 259, 821
MnlI CCTC 2 cut(s) 30, 797
Mph1103I ATGCAT 1 cut(s) 642
MroXI GAANNNNTTC 3 cut(s) 234, 288, 672
MseI TTAA 8 cut(s) 218, 261, 345, 366, 438, 513, 825, 854
MslI CAYNNNNRTG 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 274
MspR9I CCNGG 2 cut(s) 135, 699
MunI CAATTG 1 cut(s) 98
MvaI CCWGG 2 cut(s) 135, 699
MwoI GCNNNNNNNGC 2 cut(s) 684, 767
NdeII GATC 4 cut(s) 66, 529, 732, 748
NlaIII CATG 4 cut(s) 122, 507, 644, 692
NsiI ATGCAT 1 cut(s) 642
NspI RCATGY 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 240
PdmI GAANNNNTTC 3 cut(s) 234, 288, 672
PfeI GAWTC 3 cut(s) 122, 144, 211
PleI GAGTC 1 cut(s) 838
PpsI GAGTC 1 cut(s) 838
PshBI ATTAAT 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 133, 697
PspGI CCWGG 2 cut(s) 133, 697
PspPI GGNCC 3 cut(s) 85, 131, 794
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 3 cut(s) 5, 203, 744
RsaNI GTAC 3 cut(s) 4, 202, 743
RseI CAYNNNNRTG 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 8 cut(s) 218, 261, 345, 366, 438, 513, 825, 854
Sau3AI GATC 4 cut(s) 66, 529, 732, 748
Sau96I GGNCC 3 cut(s) 85, 131, 794
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 2 cut(s) 135, 699
SfaNI GCATC 3 cut(s) 214, 550, 627
SfcI CTRYAG 1 cut(s) 548
SinI GGWCC 3 cut(s) 85, 131, 794
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 2 cut(s) 293, 446
SmoI CTYRAG 2 cut(s) 293, 446
Sse9I AATT 9 cut(s) 98, 308, 383, 432, 439, 488, 629, 656, 867
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 2 cut(s) 133, 697
StyI CCWWGG 3 cut(s) 303, 473, 790
TaaI ACNGT 2 cut(s) 111, 569
TaiI ACGT 1 cut(s) 84
TasI AATT 9 cut(s) 98, 308, 383, 432, 439, 488, 629, 656, 867
TatI WGTACW 3 cut(s) 3, 201, 742
TfiI GAWTC 3 cut(s) 122, 144, 211
Tru1I TTAA 8 cut(s) 218, 261, 345, 366, 438, 513, 825, 854
Tru9I TTAA 8 cut(s) 218, 261, 345, 366, 438, 513, 825, 854
TscAI CASTG 3 cut(s) 114, 184, 572
TspDTI ATGAA 4 cut(s) 135, 180, 266, 708
TspRI CASTG 3 cut(s) 114, 184, 572
VpaK11BI GGWCC 3 cut(s) 85, 131, 794
VspI ATTAAT 1 cut(s) 438
XapI RAATTY 3 cut(s) 308, 488, 867
XceI RCATGY 1 cut(s) 507
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmnI GAANNNNTTC 3 cut(s) 234, 288, 672
XspI CTAG 1 cut(s) 596
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.