Rroxscaffold_3G00231380

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000129
Physical Location & Seq
Forward (+)
16514703 .. 16518432
3730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231380.1

Sequence Viewer

Length: 675 bp
ATGTGGATTCATCTACTCTATGAGCAAGATGCTAGATTGTTTTTCACCATAGTAGGGGTGGATCATCCGACCGGGCCGACAGAAGTTGAGGACGCCGCCTCTGCGGAGTCCGGCCGGCTTAGTCAATCTTTGGAATGGGAGAAATTCATTCCACCCTTGGAAGAAGAATCCACACTCGTGCCGAGAAAGAACCTTGAGTCCGTTCTTCCAAGATTCCTTGAGGTGATGGGATCACCGAAGCCCGTCCGCCTTTGTGGCGCCGCTTCTCGTCTTTGTGACGGTGATGCTGGCTACGTATCCTTATCGCTACACTTAGTGGCGTGTGGGTATATAACGGGAGTATATGGGAGTGGGCGCAAAGACCATTTCGGATTTTGGGGTGAAATCGGGGCGGGTCCTGTCATTGGCATTGTGGTCCATAGCCCTCATGTAAAGGTTCAAAGAATTGGGTTTCGTAATGTGTACCTGGCAGATACACAAGGACTTGCTGATACAATTATCTGGTGCATGAAAAGGGAAGATTCTCTTAAATCTCACGACAAGTTGGTGGTAGAAGAATGGATAAATTTGATACAATTGCAAGGTGCCCTTTCATTAGAGAGAGTGATAGAACGGGATTCCAGAATCCCATGGGAAAAATACTTTGAATTGCACTCACGAAAATATAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

224

Amino Acids

25.3

Weight (kDa)

5.92

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 257, 584
AciI CCGC 5 cut(s) 96, 104, 247, 261, 392
AclWI GGATC 2 cut(s) 69, 238
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 143, 565
AcyI GRCGYC 2 cut(s) 93, 258
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 2 cut(s) 54, 404
AgsI TTSAA 2 cut(s) 440, 647
AjnI CCWGG 1 cut(s) 465
AleI CACNNNNGTG 1 cut(s) 176
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AlwI GGATC 2 cut(s) 69, 238
AoxI GGCC 2 cut(s) 74, 112
ApoI RAATTY 2 cut(s) 143, 565
AspLEI GCGC 2 cut(s) 260, 357
AspS9I GGNCC 3 cut(s) 74, 395, 415
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 5 cut(s) 37, 225, 235, 293, 392
AvaII GGWCC 2 cut(s) 395, 415
BaeGI GKGCMC 1 cut(s) 589
BanI GGYRCC 2 cut(s) 257, 584
BauI CACGAG 1 cut(s) 176
BccI CCATC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 467
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 73
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 261
BfuI GTATCC 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 255
BisI GCNGC 2 cut(s) 96, 261
BlsI GCNGC 2 cut(s) 97, 262
Bme1390I CCNGG 2 cut(s) 73, 467
Bme18I GGWCC 2 cut(s) 395, 415
BmgT120I GGNCC 3 cut(s) 74, 395, 415
BmiI GGNNCC 3 cut(s) 259, 396, 586
BmrFI CCNGG 2 cut(s) 73, 467
BmsI GCATC 2 cut(s) 19, 274
BpuEI CTTGAG 2 cut(s) 215, 239
BpuMI CCSGG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 295
BsaHI GRCGYC 2 cut(s) 93, 258
BsaJI CCNNGG 2 cut(s) 156, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 404
Bse118I RCCGGY 1 cut(s) 114
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 156, 629
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 54, 404
BseSI GKGCMC 1 cut(s) 589
BseX3I CGGCCG 1 cut(s) 112
Bsh1285I CGRYCG 2 cut(s) 72, 115
BshFI GGCC 2 cut(s) 76, 114
BshNI GGYRCC 2 cut(s) 257, 584
BsiEI CGRYCG 2 cut(s) 72, 115
BsiSI CCGG 3 cut(s) 72, 111, 115
BslI CCNNNNNNNGG 2 cut(s) 54, 404
BsnI GGCC 2 cut(s) 76, 114
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 2 cut(s) 61, 230
Bsp19I CCATGG 1 cut(s) 629
BspACI CCGC 5 cut(s) 96, 104, 247, 261, 392
BspANI GGCC 2 cut(s) 76, 114
BspLI GGNNCC 3 cut(s) 259, 396, 586
BspPI GGATC 2 cut(s) 69, 238
BspT107I GGYRCC 2 cut(s) 257, 584
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 156, 629
BssMI GATC 2 cut(s) 61, 230
BssNI GRCGYC 2 cut(s) 93, 258
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 2 cut(s) 156, 629
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 1 cut(s) 281
BstACI GRCGYC 2 cut(s) 93, 258
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 116, 289
BstDEI CTNAG 2 cut(s) 119, 313
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 2 cut(s) 260, 357
BstKTI GATC 2 cut(s) 64, 233
BstMBI GATC 2 cut(s) 61, 230
BstMCI CGRYCG 2 cut(s) 72, 115
BstMWI GCNNNNNNNGC 2 cut(s) 101, 255
BstNI CCWGG 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 71, 465
BstSLI GKGCMC 1 cut(s) 589
BstSNI TACGTA 1 cut(s) 295
BstZI CGGCCG 1 cut(s) 112
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 76, 114
BtgI CCRYGG 1 cut(s) 629
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 116, 289
CfoI GCGC 2 cut(s) 260, 357
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 3 cut(s) 74, 395, 415
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 463
CviAII CATG 3 cut(s) 428, 508, 630
CviJI RGCY 6 cut(s) 76, 114, 118, 241, 291, 423
CviKI_1 RGCY 6 cut(s) 76, 114, 118, 241, 291, 423
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 119, 313
DinI GGCGCC 1 cut(s) 259
DpnI GATC 2 cut(s) 63, 232
DpnII GATC 2 cut(s) 61, 230
DraIII CACNNNGTG 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 112
EagI CGGCCG 1 cut(s) 112
EciI GGCGGA 1 cut(s) 236
EclXI CGGCCG 1 cut(s) 112
Eco105I TACGTA 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 156, 629
Eco47I GGWCC 2 cut(s) 395, 415
Eco52I CGGCCG 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 156, 629
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
ErhI CCWWGG 2 cut(s) 156, 629
FaeI CATG 3 cut(s) 431, 511, 633
FalI AAGNNNNNCTT 4 cut(s) 510, 542, 573, 605
FatI CATG 3 cut(s) 427, 507, 629
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 96, 261
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 96, 261
FspBI CTAG 1 cut(s) 33
GlaI GCGC 2 cut(s) 259, 356
GluI GCNGC 2 cut(s) 96, 261
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 2 cut(s) 76, 114
HapII CCGG 3 cut(s) 72, 111, 115
HgaI GACGC 1 cut(s) 101
HhaI GCGC 2 cut(s) 260, 357
Hin1I GRCGYC 2 cut(s) 93, 258
Hin1II CATG 3 cut(s) 431, 511, 633
Hin6I GCGC 2 cut(s) 258, 355
HinP1I GCGC 2 cut(s) 258, 355
HinfI GANTC 8 cut(s) 7, 107, 167, 197, 213, 521, 617, 624
HpaII CCGG 3 cut(s) 72, 111, 115
HphI GGTGA 5 cut(s) 37, 225, 235, 293, 392
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 2 cut(s) 69, 371
Hpy188III TCNNGA 3 cut(s) 536, 621, 657
Hpy8I GTNNAC 1 cut(s) 463
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 3 cut(s) 507, 580, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 255
HpyF3I CTNAG 2 cut(s) 119, 313
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 2 cut(s) 93, 258
Hsp92II CATG 3 cut(s) 431, 511, 633
HspAI GCGC 2 cut(s) 258, 355
KasI GGCGCC 1 cut(s) 257
KroI GCCGGC 1 cut(s) 114
KroNI GCCGGC 1 cut(s) 116
Kzo9I GATC 2 cut(s) 61, 230
LpnPI CCDG 9 cut(s) 85, 124, 128, 273, 411, 452, 479, 487, 634
LweI GCATC 2 cut(s) 19, 274
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 63, 232
MboI GATC 2 cut(s) 61, 230
MboII GAAGA 5 cut(s) 173, 176, 197, 530, 566
MfeI CAATTG 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 7 cut(s) 143, 444, 495, 565, 575, 647, 670
Mly113I GGCGCC 1 cut(s) 258
MlyI GAGTC 2 cut(s) 116, 206
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 4 cut(s) 82, 109, 214, 435
MroNI GCCGGC 1 cut(s) 114
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 3 cut(s) 72, 111, 115
MspR9I CCNGG 2 cut(s) 73, 467
MunI CAATTG 1 cut(s) 575
MvaI CCWGG 1 cut(s) 467
MwoI GCNNNNNNNGC 2 cut(s) 101, 255
NaeI GCCGGC 1 cut(s) 116
NarI GGCGCC 1 cut(s) 258
NciI CCSGG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 629
NdeII GATC 2 cut(s) 61, 230
NgoMIV GCCGGC 1 cut(s) 114
NlaIII CATG 3 cut(s) 431, 511, 633
NlaIV GGNNCC 3 cut(s) 259, 396, 586
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 116
PfeI GAWTC 6 cut(s) 7, 167, 213, 521, 617, 624
PkrI GCNGC 2 cut(s) 97, 262
PleI GAGTC 2 cut(s) 115, 205
PluTI GGCGCC 1 cut(s) 261
PpsI GAGTC 2 cut(s) 115, 205
Ppu21I YACGTR 1 cut(s) 295
PpuMI RGGWCCY 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 3 cut(s) 259, 396, 586
PspPI GGNCC 3 cut(s) 74, 395, 415
PspPPI RGGWCCY 1 cut(s) 395
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 2 cut(s) 96, 261
Sau3AI GATC 2 cut(s) 61, 230
Sau96I GGNCC 3 cut(s) 74, 395, 415
SchI GAGTC 2 cut(s) 116, 206
ScrFI CCNGG 2 cut(s) 73, 467
SduI GDGCHC 1 cut(s) 589
SetI ASST 6 cut(s) 195, 225, 297, 438, 468, 586
SfaNI GCATC 2 cut(s) 19, 274
SfoI GGCGCC 1 cut(s) 259
SinI GGWCC 2 cut(s) 395, 415
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 194, 218
SmoI CTYRAG 2 cut(s) 194, 218
SnaBI TACGTA 1 cut(s) 295
Sse9I AATT 7 cut(s) 143, 444, 495, 565, 575, 647, 670
SsiI CCGC 5 cut(s) 96, 104, 247, 261, 392
SspDI GGCGCC 1 cut(s) 257
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 71, 465
StyI CCWWGG 2 cut(s) 156, 629
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 297
TasI AATT 7 cut(s) 143, 444, 495, 565, 575, 647, 670
TauI GCSGC 2 cut(s) 98, 263
TfiI GAWTC 6 cut(s) 7, 167, 213, 521, 617, 624
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 136, 524, 582
TspGWI ACGGA 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 395, 415
XapI RAATTY 2 cut(s) 143, 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.