resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 87 - 258 | 1.6e-51 | TIR domain |
| TIR_2 | PF13676 | 89 - 185 | 2.5e-16 | TIR domain |
| NB-ARC | PF00931 | 281 - 435 | 1.1e-23 | NB-ARC domain |
| NACHT | PF05729 | 286 - 432 | 3.1e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 503 - 572 | 7.9e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 745 - 883 | 3.2e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 763 - 850 | 1.1e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 912 - 1013 | 2.6e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 1092 - 1230 | 6.8e-10 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 4778 |
| Acc36I | ACCTGC | 1 cut(s) | 3317 |
| AccB1I | GGYRCC | 1 cut(s) | 2938 |
| AccI | GTMKAC | 2 cut(s) | 2126, 3698 |
| AccII | CGCG | 1 cut(s) | 4204 |
| AccIII | TCCGGA | 2 cut(s) | 841, 1606 |
| AclWI | GGATC | 6 cut(s) | 545, 623, 2698, 3230, 3792, 4131 |
| AcoI | YGGCCR | 1 cut(s) | 4306 |
| AcyI | GRCGYC | 1 cut(s) | 4697 |
| AdeI | CACNNNGTG | 1 cut(s) | 123 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 245, 1606, 1792, 2210, 4924 |
| AflII | CTTAAG | 1 cut(s) | 4954 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 524 |
| AjiI | CACGTC | 1 cut(s) | 3942 |
| AjnI | CCWGG | 9 cut(s) | 631, 1168, 1629, 1732, 2580, 3712, 4279, 4320, 4922 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1511, 1543, 3623, 3655 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3393, 3425 |
| Alw21I | GWGCWC | 2 cut(s) | 1435, 3464 |
| Alw26I | GTCTC | 9 cut(s) | 163, 562, 2483, 2522, 2610, 2894, 3084, 4545, 4900 |
| Alw44I | GTGCAC | 2 cut(s) | 1431, 3460 |
| AlwI | GGATC | 6 cut(s) | 545, 623, 2698, 3230, 3792, 4131 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1960 |
| Ama87I | CYCGRG | 2 cut(s) | 2897, 4131 |
| Aor13HI | TCCGGA | 2 cut(s) | 841, 1606 |
| AoxI | GGCC | 3 cut(s) | 3, 1363, 4306 |
| ApaLI | GTGCAC | 2 cut(s) | 1431, 3460 |
| ApeKI | GCWGC | 5 cut(s) | 132, 135, 942, 2814, 4000 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4781, 4813 |
| AseI | ATTAAT | 1 cut(s) | 1473 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 816, 1269, 1292, 1323, 3494, 4592 |
| AspLEI | GCGC | 2 cut(s) | 4052, 4973 |
| AspS9I | GGNCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| AsuC2I | CCSGG | 1 cut(s) | 2010 |
| AsuHPI | GGTGA | 6 cut(s) | 638, 739, 794, 1255, 2192, 4121 |
| AsuII | TTCGAA | 1 cut(s) | 1013 |
| AvaI | CYCGRG | 2 cut(s) | 2897, 4131 |
| AvaII | GGWCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| BaeGI | GKGCMC | 3 cut(s) | 1435, 2943, 3464 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1676, 1709 |
| BanI | GGYRCC | 1 cut(s) | 2938 |
| BauI | CACGAG | 1 cut(s) | 4881 |
| BbsI | GAAGAC | 2 cut(s) | 3834, 4552 |
| Bbv12I | GWGCWC | 2 cut(s) | 1435, 3464 |
| BbvCI | CCTCAGC | 1 cut(s) | 272 |
| BbvI | GCAGC | 5 cut(s) | 119, 122, 954, 2826, 3987 |
| BceAI | ACGGC | 2 cut(s) | 4293, 4807 |
| BciT130I | CCWGG | 9 cut(s) | 633, 1170, 1631, 1734, 2582, 3714, 4281, 4322, 4924 |
| BclI | TGATCA | 2 cut(s) | 2439, 3184 |
| BcnI | CCSGG | 1 cut(s) | 2010 |
| BcoDI | GTCTC | 9 cut(s) | 163, 562, 2483, 2522, 2610, 2894, 3084, 4545, 4900 |
| BfmI | CTRYAG | 3 cut(s) | 182, 1803, 4963 |
| BfrI | CTTAAG | 1 cut(s) | 4954 |
| BfuAI | ACCTGC | 1 cut(s) | 3317 |
| BglII | AGATCT | 2 cut(s) | 3340, 5005 |
| BisI | GCNGC | 8 cut(s) | 133, 136, 943, 2044, 2815, 3615, 4001, 4306 |
| BlsI | GCNGC | 8 cut(s) | 134, 137, 944, 2045, 2816, 3616, 4002, 4307 |
| Bme18I | GGWCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 524 |
| BmeT110I | CYCGRG | 2 cut(s) | 2897, 4131 |
| BmgBI | CACGTC | 1 cut(s) | 3942 |
| BmgT120I | GGNCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| BmiI | GGNNCC | 3 cut(s) | 2148, 2794, 2940 |
| BmrI | ACTGGG | 3 cut(s) | 527, 3246, 4540 |
| BmuI | ACTGGG | 3 cut(s) | 527, 3246, 4540 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4731 |
| BpiI | GAAGAC | 2 cut(s) | 3834, 4552 |
| BpmI | CTGGAG | 5 cut(s) | 2115, 2393, 2603, 3321, 3817 |
| Bpu10I | CCTNAGC | 2 cut(s) | 272, 3848 |
| Bpu14I | TTCGAA | 1 cut(s) | 1013 |
| BpuEI | CTTGAG | 7 cut(s) | 971, 2177, 2204, 2315, 3905, 4160, 4817 |
| BpuMI | CCSGG | 1 cut(s) | 2010 |
| Bsa29I | ATCGAT | 2 cut(s) | 386, 2097 |
| BsaAI | YACGTR | 1 cut(s) | 1085 |
| BsaBI | GATNNNNATC | 2 cut(s) | 549, 2778 |
| BsaHI | GRCGYC | 1 cut(s) | 4697 |
| BsaI | GGTCTC | 1 cut(s) | 163 |
| BsaJI | CCNNGG | 8 cut(s) | 1169, 2665, 3606, 3712, 3713, 4202, 4838, 4923 |
| BsaWI | WCCGGW | 4 cut(s) | 245, 841, 1606, 2738 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1218, 1248, 1611, 1641, 3319, 3349 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 245, 1606, 1792, 2210, 4924 |
| Bse3DI | GCAATG | 3 cut(s) | 1533, 1970, 4161 |
| Bse8I | GATNNNNATC | 2 cut(s) | 549, 2778 |
| BseAI | TCCGGA | 2 cut(s) | 841, 1606 |
| BseBI | CCWGG | 9 cut(s) | 633, 1170, 1631, 1734, 2582, 3714, 4281, 4322, 4924 |
| BseCI | ATCGAT | 2 cut(s) | 386, 2097 |
| BseDI | CCNNGG | 8 cut(s) | 1169, 2665, 3606, 3712, 3713, 4202, 4838, 4923 |
| BseJI | GATNNNNATC | 2 cut(s) | 549, 2778 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 245, 1606, 1792, 2210, 4924 |
| BseMI | GCAATG | 3 cut(s) | 1533, 1970, 4161 |
| BseRI | GAGGAG | 4 cut(s) | 14, 228, 1811, 4533 |
| BseSI | GKGCMC | 3 cut(s) | 1435, 2943, 3464 |
| BseX3I | CGGCCG | 1 cut(s) | 4306 |
| BseXI | GCAGC | 5 cut(s) | 119, 122, 954, 2826, 3987 |
| BsgI | GTGCAG | 3 cut(s) | 1005, 1236, 4305 |
| Bsh1236I | CGCG | 1 cut(s) | 4204 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4309 |
| BshFI | GGCC | 3 cut(s) | 5, 1365, 4308 |
| BshNI | GGYRCC | 1 cut(s) | 2938 |
| BshVI | ATCGAT | 2 cut(s) | 386, 2097 |
| BsiEI | CGRYCG | 1 cut(s) | 4309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1435, 3464 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2897, 4131 |
| BsiSI | CCGG | 5 cut(s) | 246, 842, 1607, 2009, 2739 |
| BsiWI | CGTACG | 1 cut(s) | 258 |
| BslFI | GGGAC | 7 cut(s) | 531, 2278, 2404, 3414, 4114, 4541, 4684 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 245, 1606, 1792, 2210, 4924 |
| BsmAI | GTCTC | 9 cut(s) | 163, 562, 2483, 2522, 2610, 2894, 3084, 4545, 4900 |
| BsmBI | CGTCTC | 1 cut(s) | 2483 |
| BsmFI | GGGAC | 7 cut(s) | 531, 2278, 2404, 3414, 4114, 4541, 4684 |
| BsmI | GAATGC | 4 cut(s) | 2035, 2088, 2268, 2582 |
| BsnI | GGCC | 3 cut(s) | 5, 1365, 4308 |
| Bso31I | GGTCTC | 1 cut(s) | 163 |
| BsoBI | CYCGRG | 2 cut(s) | 2897, 4131 |
| Bsp119I | TTCGAA | 1 cut(s) | 1013 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1435, 2943, 3464 |
| Bsp13I | TCCGGA | 2 cut(s) | 841, 1606 |
| Bsp1407I | TGTACA | 3 cut(s) | 1039, 1618, 4194 |
| Bsp19I | CCATGG | 2 cut(s) | 3606, 4838 |
| BspANI | GGCC | 3 cut(s) | 5, 1365, 4308 |
| BspDI | ATCGAT | 2 cut(s) | 386, 2097 |
| BspEI | TCCGGA | 2 cut(s) | 841, 1606 |
| BspFNI | CGCG | 1 cut(s) | 4204 |
| BspLI | GGNNCC | 3 cut(s) | 2148, 2794, 2940 |
| BspMAI | CTGCAG | 1 cut(s) | 1807 |
| BspMI | ACCTGC | 1 cut(s) | 3317 |
| BspPI | GGATC | 6 cut(s) | 545, 623, 2698, 3230, 3792, 4131 |
| BspQI | GCTCTTC | 2 cut(s) | 1275, 1722 |
| BspT104I | TTCGAA | 1 cut(s) | 1013 |
| BspT107I | GGYRCC | 1 cut(s) | 2938 |
| BspTI | CTTAAG | 1 cut(s) | 4954 |
| BspTNI | GGTCTC | 1 cut(s) | 163 |
| BsrDI | GCAATG | 3 cut(s) | 1533, 1970, 4161 |
| BsrGI | TGTACA | 3 cut(s) | 1039, 1618, 4194 |
| BssECI | CCNNGG | 8 cut(s) | 1169, 2665, 3606, 3712, 3713, 4202, 4838, 4923 |
| BssNAI | GTATAC | 1 cut(s) | 3699 |
| BssNI | GRCGYC | 1 cut(s) | 4697 |
| BssSI | CACGAG | 1 cut(s) | 4881 |
| BssT1I | CCWWGG | 2 cut(s) | 3606, 4838 |
| Bst1107I | GTATAC | 1 cut(s) | 3699 |
| Bst2BI | CACGAG | 1 cut(s) | 4881 |
| Bst2UI | CCWGG | 9 cut(s) | 633, 1170, 1631, 1734, 2582, 3714, 4281, 4322, 4924 |
| Bst4CI | ACNGT | 7 cut(s) | 121, 1604, 1956, 3376, 3409, 3841, 4730 |
| Bst6I | CTCTTC | 3 cut(s) | 411, 1275, 1722 |
| BstACI | GRCGYC | 1 cut(s) | 4697 |
| BstAFI | CTTAAG | 1 cut(s) | 4954 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1802 |
| BstAUI | TGTACA | 3 cut(s) | 1039, 1618, 4194 |
| BstBAI | YACGTR | 1 cut(s) | 1085 |
| BstBI | TTCGAA | 1 cut(s) | 1013 |
| BstC8I | GCNNGC | 6 cut(s) | 2369, 2973, 3770, 4206, 4230, 4364 |
| BstDSI | CCRYGG | 3 cut(s) | 3606, 4202, 4838 |
| BstEII | GGTNACC | 1 cut(s) | 2012 |
| BstFNI | CGCG | 1 cut(s) | 4204 |
| BstHHI | GCGC | 2 cut(s) | 4052, 4973 |
| BstMAI | GTCTC | 9 cut(s) | 163, 562, 2483, 2522, 2610, 2894, 3084, 4545, 4900 |
| BstMCI | CGRYCG | 1 cut(s) | 4309 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 464, 494, 613, 1802, 4049, 4058 |
| BstNI | CCWGG | 9 cut(s) | 633, 1170, 1631, 1734, 2582, 3714, 4281, 4322, 4924 |
| BstNSI | RCATGY | 2 cut(s) | 1542, 4366 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4731 |
| BstPI | GGTNACC | 1 cut(s) | 2012 |
| BstSFI | CTRYAG | 3 cut(s) | 182, 1803, 4963 |
| BstSLI | GKGCMC | 3 cut(s) | 1435, 2943, 3464 |
| BstSNI | TACGTA | 1 cut(s) | 1085 |
| BstUI | CGCG | 1 cut(s) | 4204 |
| BstV1I | GCAGC | 5 cut(s) | 119, 122, 954, 2826, 3987 |
| BstV2I | GAAGAC | 2 cut(s) | 3834, 4552 |
| BstX2I | RGATCY | 3 cut(s) | 3340, 4123, 5005 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1313, 3659 |
| BstYI | RGATCY | 3 cut(s) | 3340, 4123, 5005 |
| BstZ17I | GTATAC | 1 cut(s) | 3699 |
| BstZI | CGGCCG | 1 cut(s) | 4306 |
| Bsu15I | ATCGAT | 2 cut(s) | 386, 2097 |
| BsuRI | GGCC | 3 cut(s) | 5, 1365, 4308 |
| BsuTUI | ATCGAT | 2 cut(s) | 386, 2097 |
| BtgI | CCRYGG | 3 cut(s) | 3606, 4202, 4838 |
| BtrI | CACGTC | 1 cut(s) | 3942 |
| BtsI | GCAGTG | 4 cut(s) | 321, 1800, 3194, 4617 |
| BveI | ACCTGC | 1 cut(s) | 3317 |
| Cac8I | GCNNGC | 6 cut(s) | 2369, 2973, 3770, 4206, 4230, 4364 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1960 |
| CfoI | GCGC | 2 cut(s) | 4052, 4973 |
| Cfr13I | GGNCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| Cfr42I | CCGCGG | 1 cut(s) | 4205 |
| ClaI | ATCGAT | 2 cut(s) | 386, 2097 |
| CseI | GACGC | 4 cut(s) | 2465, 4546, 4686, 5032 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3591, 3626 |
| DraI | TTTAAA | 5 cut(s) | 1350, 1549, 2238, 4096, 4896 |
| DraIII | CACNNNGTG | 1 cut(s) | 123 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4778 |
| DriI | GACNNNNNGTC | 1 cut(s) | 524 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4778 |
| EaeI | YGGCCR | 1 cut(s) | 4306 |
| EagI | CGGCCG | 1 cut(s) | 4306 |
| Eam1104I | CTCTTC | 3 cut(s) | 411, 1275, 1722 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 524 |
| EarI | CTCTTC | 3 cut(s) | 411, 1275, 1722 |
| EciI | GGCGGA | 3 cut(s) | 5, 2262, 2616 |
| EclXI | CGGCCG | 1 cut(s) | 4306 |
| Eco105I | TACGTA | 1 cut(s) | 1085 |
| Eco130I | CCWWGG | 2 cut(s) | 3606, 4838 |
| Eco31I | GGTCTC | 1 cut(s) | 163 |
| Eco32I | GATATC | 2 cut(s) | 3259, 4858 |
| Eco47I | GGWCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| Eco52I | CGGCCG | 1 cut(s) | 4306 |
| Eco88I | CYCGRG | 2 cut(s) | 2897, 4131 |
| Eco91I | GGTNACC | 1 cut(s) | 2012 |
| EcoO65I | GGTNACC | 1 cut(s) | 2012 |
| EcoRII | CCWGG | 9 cut(s) | 631, 1168, 1629, 1732, 2580, 3712, 4279, 4320, 4922 |
| EcoRV | GATATC | 2 cut(s) | 3259, 4858 |
| EcoT14I | CCWWGG | 2 cut(s) | 3606, 4838 |
| EcoT22I | ATGCAT | 3 cut(s) | 506, 1677, 2037 |
| ErhI | CCWWGG | 2 cut(s) | 3606, 4838 |
| Esp3I | CGTCTC | 1 cut(s) | 2483 |
| FaqI | GGGAC | 7 cut(s) | 531, 2278, 2404, 3414, 4114, 4541, 4684 |
| FauI | CCCGC | 2 cut(s) | 302, 4197 |
| FauNDI | CATATG | 1 cut(s) | 556 |
| FbaI | TGATCA | 2 cut(s) | 2439, 3184 |
| FblI | GTMKAC | 2 cut(s) | 2126, 3698 |
| Fnu4HI | GCNGC | 8 cut(s) | 133, 136, 943, 2044, 2815, 3615, 4001, 4306 |
| Fsp4HI | GCNGC | 8 cut(s) | 133, 136, 943, 2044, 2815, 3615, 4001, 4306 |
| GlaI | GCGC | 2 cut(s) | 4051, 4972 |
| GluI | GCNGC | 8 cut(s) | 133, 136, 943, 2044, 2815, 3615, 4001, 4306 |
| GsuI | CTGGAG | 5 cut(s) | 2115, 2393, 2603, 3321, 3817 |
| HaeIII | GGCC | 3 cut(s) | 5, 1365, 4308 |
| HapII | CCGG | 5 cut(s) | 246, 842, 1607, 2009, 2739 |
| HgaI | GACGC | 4 cut(s) | 2465, 4546, 4686, 5032 |
| HhaI | GCGC | 2 cut(s) | 4052, 4973 |
| Hin1I | GRCGYC | 1 cut(s) | 4697 |
| Hin6I | GCGC | 2 cut(s) | 4050, 4971 |
| HinP1I | GCGC | 2 cut(s) | 4050, 4971 |
| HincII | GTYRAC | 2 cut(s) | 2127, 3981 |
| HindII | GTYRAC | 2 cut(s) | 2127, 3981 |
| HindIII | AAGCTT | 3 cut(s) | 2365, 2588, 2945 |
| HpaII | CCGG | 5 cut(s) | 246, 842, 1607, 2009, 2739 |
| HphI | GGTGA | 6 cut(s) | 638, 739, 794, 1255, 2192, 4121 |
| Hpy99I | CGWCG | 2 cut(s) | 1833, 3943 |
| HpyCH4III | ACNGT | 7 cut(s) | 121, 1604, 1956, 3376, 3409, 3841, 4730 |
| HpyCH4IV | ACGT | 5 cut(s) | 257, 1084, 1741, 1828, 3941 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 464, 494, 613, 1802, 4049, 4058 |
| HpySE526I | ACGT | 5 cut(s) | 257, 1084, 1741, 1828, 3941 |
| Hsp92I | GRCGYC | 1 cut(s) | 4697 |
| HspAI | GCGC | 2 cut(s) | 4050, 4971 |
| Kpn2I | TCCGGA | 2 cut(s) | 841, 1606 |
| Ksp22I | TGATCA | 2 cut(s) | 2439, 3184 |
| KspI | CCGCGG | 1 cut(s) | 4205 |
| LguI | GCTCTTC | 2 cut(s) | 1275, 1722 |
| LmnI | GCTCC | 4 cut(s) | 2167, 2374, 2792, 4568 |
| Lsp1109I | GCAGC | 5 cut(s) | 119, 122, 954, 2826, 3987 |
| MaeII | ACGT | 5 cut(s) | 257, 1084, 1741, 1828, 3941 |
| MaeIII | GTNAC | 8 cut(s) | 202, 452, 1645, 1950, 2012, 3192, 4161, 4927 |
| MfeI | CAATTG | 5 cut(s) | 411, 1133, 2917, 3030, 4056 |
| MflI | RGATCY | 3 cut(s) | 3340, 4123, 5005 |
| MhlI | GDGCHC | 3 cut(s) | 1435, 2943, 3464 |
| MmeI | TCCRAC | 2 cut(s) | 1294, 1849 |
| Mph1103I | ATGCAT | 3 cut(s) | 506, 1677, 2037 |
| MroI | TCCGGA | 2 cut(s) | 841, 1606 |
| MroXI | GAANNNNTTC | 6 cut(s) | 816, 1269, 1292, 1323, 3494, 4592 |
| MslI | CAYNNNNRTG | 4 cut(s) | 807, 1052, 2385, 4605 |
| MspA1I | CMGCKG | 2 cut(s) | 1309, 4204 |
| MspCI | CTTAAG | 1 cut(s) | 4954 |
| MspI | CCGG | 5 cut(s) | 246, 842, 1607, 2009, 2739 |
| MunI | CAATTG | 5 cut(s) | 411, 1133, 2917, 3030, 4056 |
| Mva1269I | GAATGC | 4 cut(s) | 2035, 2088, 2268, 2582 |
| MvaI | CCWGG | 9 cut(s) | 633, 1170, 1631, 1734, 2582, 3714, 4281, 4322, 4924 |
| MvnI | CGCG | 1 cut(s) | 4204 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 464, 494, 613, 1802, 4049, 4058 |
| NciI | CCSGG | 1 cut(s) | 2010 |
| NcoI | CCATGG | 2 cut(s) | 3606, 4838 |
| NdeI | CATATG | 1 cut(s) | 556 |
| NlaIV | GGNNCC | 3 cut(s) | 2148, 2794, 2940 |
| NmeAIII | GCCGAG | 1 cut(s) | 2690 |
| NmuCI | GTSAC | 2 cut(s) | 3192, 4161 |
| NsiI | ATGCAT | 3 cut(s) | 506, 1677, 2037 |
| NspI | RCATGY | 2 cut(s) | 1542, 4366 |
| NspV | TTCGAA | 1 cut(s) | 1013 |
| PaeI | GCATGC | 1 cut(s) | 4366 |
| PaeR7I | CTCGAG | 1 cut(s) | 2897 |
| PasI | CCCWGGG | 1 cut(s) | 3713 |
| PciSI | GCTCTTC | 2 cut(s) | 1275, 1722 |
| PctI | GAATGC | 4 cut(s) | 2035, 2088, 2268, 2582 |
| PdmI | GAANNNNTTC | 6 cut(s) | 816, 1269, 1292, 1323, 3494, 4592 |
| Pfl23II | CGTACG | 1 cut(s) | 258 |
| PfoI | TCCNGGA | 1 cut(s) | 1629 |
| PkrI | GCNGC | 8 cut(s) | 134, 137, 944, 2045, 2816, 3616, 4002, 4307 |
| Ppu21I | YACGTR | 1 cut(s) | 1085 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4731 |
| PshBI | ATTAAT | 1 cut(s) | 1473 |
| Psp6I | CCWGG | 9 cut(s) | 631, 1168, 1629, 1732, 2580, 3712, 4279, 4320, 4922 |
| PspEI | GGTNACC | 1 cut(s) | 2012 |
| PspGI | CCWGG | 9 cut(s) | 631, 1168, 1629, 1732, 2580, 3712, 4279, 4320, 4922 |
| PspLI | CGTACG | 1 cut(s) | 258 |
| PspN4I | GGNNCC | 3 cut(s) | 2148, 2794, 2940 |
| PspPI | GGNCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 89, 121, 251, 283 |
| PstI | CTGCAG | 1 cut(s) | 1807 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1960 |
| PsuI | RGATCY | 3 cut(s) | 3340, 4123, 5005 |
| PvuII | CAGCTG | 1 cut(s) | 1309 |
| RseI | CAYNNNNRTG | 4 cut(s) | 807, 1052, 2385, 4605 |
| SacII | CCGCGG | 1 cut(s) | 4205 |
| SalI | GTCGAC | 1 cut(s) | 2125 |
| SapI | GCTCTTC | 2 cut(s) | 1275, 1722 |
| SatI | GCNGC | 8 cut(s) | 133, 136, 943, 2044, 2815, 3615, 4001, 4306 |
| Sau96I | GGNCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| SduI | GDGCHC | 3 cut(s) | 1435, 2943, 3464 |
| SfcI | CTRYAG | 3 cut(s) | 182, 1803, 4963 |
| Sfr274I | CTCGAG | 1 cut(s) | 2897 |
| Sfr303I | CCGCGG | 1 cut(s) | 4205 |
| SfuI | TTCGAA | 1 cut(s) | 1013 |
| SgrBI | CCGCGG | 1 cut(s) | 4205 |
| SinI | GGWCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| SlaI | CTCGAG | 1 cut(s) | 2897 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 807, 1052, 2385, 4605 |
| SmlI | CTYRAG | 9 cut(s) | 950, 2156, 2219, 2330, 2897, 3884, 4139, 4832, 4954 |
| SmoI | CTYRAG | 9 cut(s) | 950, 2156, 2219, 2330, 2897, 3884, 4139, 4832, 4954 |
| SnaBI | TACGTA | 1 cut(s) | 1085 |
| SphI | GCATGC | 1 cut(s) | 4366 |
| SspI | AATATT | 3 cut(s) | 1581, 3791, 4892 |
| StyI | CCWWGG | 2 cut(s) | 3606, 4838 |
| TaaI | ACNGT | 7 cut(s) | 121, 1604, 1956, 3376, 3409, 3841, 4730 |
| TaiI | ACGT | 5 cut(s) | 260, 1087, 1744, 1831, 3944 |
| TatI | WGTACW | 8 cut(s) | 1039, 1618, 1777, 3836, 4143, 4194, 4451, 4753 |
| TauI | GCSGC | 3 cut(s) | 2046, 3617, 4308 |
| TseFI | GTSAC | 2 cut(s) | 3192, 4161 |
| TseI | GCWGC | 5 cut(s) | 132, 135, 942, 2814, 4000 |
| Tsp45I | GTSAC | 2 cut(s) | 3192, 4161 |
| TspGWI | ACGGA | 4 cut(s) | 580, 1700, 2104, 2471 |
| Vha464I | CTTAAG | 1 cut(s) | 4954 |
| VneI | GTGCAC | 2 cut(s) | 1431, 3460 |
| VpaK11BI | GGWCC | 5 cut(s) | 187, 392, 1120, 1166, 3649 |
| VspI | ATTAAT | 1 cut(s) | 1473 |
| XbaI | TCTAGA | 2 cut(s) | 1193, 2905 |
| XceI | RCATGY | 2 cut(s) | 1542, 4366 |
| XhoI | CTCGAG | 1 cut(s) | 2897 |
| XmiI | GTMKAC | 2 cut(s) | 2126, 3698 |
| XmnI | GAANNNNTTC | 6 cut(s) | 816, 1269, 1292, 1323, 3494, 4592 |
| Zsp2I | ATGCAT | 3 cut(s) | 506, 1677, 2037 |