Rmu_sc0014401.1_g000001

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014401.1
Physical Location & Seq
Forward (+)
1 .. 903
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014401.1_g000001.1.cds

Sequence Viewer

Length: 525 bp
gactggtctgaccctcgtgttgcttattgtgccttcaagagagttgaaatctccaagttgaaatggttcatgccttttatccaccaaggcaactctgcagcaatccaactgcctttaaatgtgttcgatgatgataattggttgggctttgcagtatatgttcagttgtcccatgaccaatatccaaacattagtcatgggcctcatggcagtaccactatcgattcagaggatgttgtgcttaattttcgtctggactctgatgttgcttggcacgggttatttgatctcaacatgcatttaagttttgagattagagagccatcggtattagatacgacttggttcctttatttaccgcgcactcaagtctgtagtaggatgtggaggcaatgccaattggccaggataactatgtggttctctagaccatgcttagcagtgcatagttgtgcccttcgtctacaatttaaggaggacgttgaacatcttgtagaaacactgaccctcgcggaattaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

20.31

Weight (kDa)

5.52

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 463
AccII CGCG 2 cut(s) 361, 512
AciI CCGC 2 cut(s) 359, 512
AcoI YGGCCR 1 cut(s) 402
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 4 cut(s) 37, 47, 61, 485
AjnI CCWGG 1 cut(s) 404
AoxI GGCC 2 cut(s) 200, 402
ApeKI GCWGC 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 457
BalI TGGCCA 1 cut(s) 404
BauI CACGAG 1 cut(s) 15
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 406
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 2 cut(s) 96, 373
BisI GCNGC 1 cut(s) 99
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 406
Bpu1102I GCTNAGC 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 2 cut(s) 238, 387
BseMI GCAATG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 8
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 2 cut(s) 361, 512
BshFI GGCC 2 cut(s) 202, 404
BshVI ATCGAT 1 cut(s) 222
BslFI GGGAC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 202, 404
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 1 cut(s) 286
Bsp1720I GCTNAGC 1 cut(s) 436
BspACI CCGC 2 cut(s) 359, 512
BspANI GGCC 2 cut(s) 202, 404
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 2 cut(s) 361, 512
BspLI GGNNCC 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 286
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 436
BstF5I GGATG 2 cut(s) 238, 387
BstFNI CGCG 2 cut(s) 361, 512
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 404
BstSFI CTRYAG 2 cut(s) 96, 373
BstSLI GKGCMC 1 cut(s) 457
BstUI CGCG 2 cut(s) 361, 512
BstV1I GCAGC 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 2 cut(s) 202, 404
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 2 cut(s) 238, 387
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 447, 500
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 200
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 1 cut(s) 213
CviAII CATG 6 cut(s) 70, 173, 197, 206, 295, 432
CviJI RGCY 4 cut(s) 147, 202, 322, 404
CviKI_1 RGCY 4 cut(s) 147, 202, 322, 404
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 436
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
DraI TTTAAA 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 6 cut(s) 73, 176, 200, 209, 298, 435
FaqI GGGAC 1 cut(s) 154
FatI CATG 6 cut(s) 69, 172, 196, 205, 294, 431
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 245, 394
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 362
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 2 cut(s) 202, 404
HhaI GCGC 1 cut(s) 363
Hin1II CATG 6 cut(s) 73, 176, 200, 209, 298, 435
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 2 cut(s) 224, 257
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 3 cut(s) 10, 229, 262
Hpy188III TCNNGA 3 cut(s) 37, 254, 426
Hpy8I GTNNAC 1 cut(s) 464
HpyAV CCTTC 2 cut(s) 43, 467
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 4 cut(s) 98, 152, 298, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 436
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 6 cut(s) 73, 176, 200, 209, 298, 435
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 3 cut(s) 239, 391, 418
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 480
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MfeI CAATTG 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 457
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 5 cut(s) 136, 244, 398, 467, 515
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 6 cut(s) 24, 213, 223, 381, 469, 518
Mox20I TGGCCA 1 cut(s) 404
Mph1103I ATGCAT 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 404
MseI TTAA 4 cut(s) 116, 243, 302, 471
MslI CAYNNNNRTG 1 cut(s) 450
Msp20I TGGCCA 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 2 cut(s) 361, 512
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 286
NlaIII CATG 6 cut(s) 73, 176, 200, 209, 298, 435
NlaIV GGNNCC 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 100
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 450
SaqAI TTAA 4 cut(s) 116, 243, 302, 471
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 406
SduI GDGCHC 1 cut(s) 457
SetI ASST 2 cut(s) 483, 523
SfcI CTRYAG 2 cut(s) 96, 373
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 5 cut(s) 136, 244, 398, 467, 515
SsiI CCGC 2 cut(s) 359, 512
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 85
TaiI ACGT 1 cut(s) 483
TaqI TCGA 2 cut(s) 126, 222
TasI AATT 5 cut(s) 136, 244, 398, 467, 515
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 4 cut(s) 116, 243, 302, 471
Tru9I TTAA 4 cut(s) 116, 243, 302, 471
TscAI CASTG 2 cut(s) 447, 507
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 2 cut(s) 447, 507
XbaI TCTAGA 1 cut(s) 425
XceI RCATGY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.