Rh2CG282500

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000129
Physical Location & Seq
Forward (+)
31564373 .. 31564945
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG282500.1

Sequence Viewer

Length: 573 bp
ATGAAATGTCTGGAGATGCTTTCCATTGGTGGAACTTCCATAAGGGAGTTATCCTTCATTGAAGGCATGAAGAATCTACGGTATCTATCCTGCCGAGGATGTAAACGTCTAGTTTCAAAATCATGCAAAGTTCTGGCTTCGTTATCGAATTTGATACAGCTAGACTTGAGTTATTGCAATCTGATGGACGGAGCAATTCTCAATGATCTTAGCAGCTCCTTAAGATTGTTAGATTTAAGTGGTAATTGCTTTGTGCGATTATCTGAAAGTATCTCTCAACTCTCAAAGCTCGAGACCCTGACCTTGAGTCATTGCAGACAGCTTCAATTGCTGCCCAACCAGCTTCCATTGCTGCCCAACCAGCTTACATCAAGTCTTCAAGACGTGTATGCACAAGATTGTACTTCACTGACGGATTACCCAAATCAAATCGAAGTATTACATTCTTCGGAGTCAGGAGTGACTTTTGTCAATTCCCTCGATTCTTCAATACTTGGAGCCTCAGAGATTTCCACAATATTCGGTTTTTTTAAGAAATCAGGGAGAATCTATGAACCTGTGTGTGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

190

Amino Acids

20.98

Weight (kDa)

5.69

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 148, 567
AfaI GTAC 1 cut(s) 403
AflII CTTAAG 1 cut(s) 220
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 5 cut(s) 62, 117, 326, 380, 489
AhdI GACNNNNNGTC 1 cut(s) 306
AjiI CACGTC 1 cut(s) 385
AluBI AGCT 6 cut(s) 160, 216, 289, 322, 343, 364
AluI AGCT 6 cut(s) 160, 216, 289, 322, 343, 364
Alw26I GTCTC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 290
ApeKI GCWGC 3 cut(s) 213, 331, 352
ApoI RAATTY 2 cut(s) 148, 567
AvaI CYCGRG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 3 cut(s) 225, 318, 339
BccI CCATC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 2 cut(s) 110, 161
BfrI CTTAAG 1 cut(s) 220
BisI GCNGC 3 cut(s) 214, 332, 353
BlsI GCNGC 3 cut(s) 215, 333, 354
BmeRI GACNNNNNGTC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 499
BmsI GCATC 1 cut(s) 6
BoxI GACNNNNGTC 1 cut(s) 467
BpiI GAAGAC 1 cut(s) 368
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 187, 325
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 94
Bse3DI GCAATG 2 cut(s) 310, 347
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 104
BseMI GCAATG 2 cut(s) 310, 347
BseMII CTCAG 1 cut(s) 516
BseXI GCAGC 3 cut(s) 225, 318, 339
BsiHKCI CYCGRG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 290
Bsp143I GATC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 515
BspLI GGNNCC 1 cut(s) 499
BspTI CTTAAG 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 310, 347
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 209, 502
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 4 cut(s) 328, 340, 349, 361
BstPAI GACNNNNGTC 1 cut(s) 467
BstV1I GCAGC 3 cut(s) 225, 318, 339
BstV2I GAAGAC 1 cut(s) 368
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 407
Csp6I GTAC 1 cut(s) 402
CviAII CATG 2 cut(s) 67, 123
CviJI RGCY 8 cut(s) 137, 160, 216, 289, 322, 343, 364, 500
CviKI_1 RGCY 8 cut(s) 137, 160, 216, 289, 322, 343, 364, 500
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 2 cut(s) 209, 502
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DriI GACNNNNNGTC 1 cut(s) 306
Eam1105I GACNNNNNGTC 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 290
FaeI CATG 2 cut(s) 70, 126
FaiI YATR 5 cut(s) 41, 68, 124, 390, 552
FatI CATG 2 cut(s) 66, 122
Fnu4HI GCNGC 3 cut(s) 214, 332, 353
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 214, 332, 353
FspBI CTAG 2 cut(s) 110, 161
GluI GCNGC 3 cut(s) 214, 332, 353
GsuI CTGGAG 1 cut(s) 32
Hin1II CATG 2 cut(s) 70, 126
HinfI GANTC 5 cut(s) 73, 307, 452, 482, 546
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 183, 265, 451, 505
Hpy188III TCNNGA 4 cut(s) 11, 292, 380, 456
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 56, 64
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 2 cut(s) 106, 384
HpyCH4V TGCA 4 cut(s) 126, 177, 315, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 340, 349, 361
HpyF3I CTNAG 2 cut(s) 209, 502
HpySE526I ACGT 2 cut(s) 106, 384
Hsp92II CATG 2 cut(s) 70, 126
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 3 cut(s) 191, 221, 497
LpnPI CCDG 7 cut(s) 103, 119, 311, 353, 374, 441, 525
Lsp1109I GCAGC 3 cut(s) 225, 318, 339
LweI GCATC 1 cut(s) 6
MaeI CTAG 2 cut(s) 110, 161
MaeII ACGT 2 cut(s) 106, 384
MaeIII GTNAC 1 cut(s) 460
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 4 cut(s) 82, 368, 438, 477
MfeI CAATTG 1 cut(s) 326
MluCI AATT 6 cut(s) 148, 195, 244, 326, 472, 567
MlyI GAGTC 2 cut(s) 316, 461
MnlI CCTC 3 cut(s) 89, 488, 511
MseI TTAA 4 cut(s) 221, 236, 531, 571
MspCI CTTAAG 1 cut(s) 220
MunI CAATTG 1 cut(s) 326
MwoI GCNNNNNNNGC 4 cut(s) 328, 340, 349, 361
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 70, 126
NlaIV GGNNCC 1 cut(s) 499
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 290
PfeI GAWTC 3 cut(s) 73, 482, 546
PkrI GCNGC 3 cut(s) 215, 333, 354
PleI GAGTC 2 cut(s) 315, 460
PpsI GAGTC 2 cut(s) 315, 460
PshAI GACNNNNGTC 1 cut(s) 467
PspN4I GGNNCC 1 cut(s) 499
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SaqAI TTAA 4 cut(s) 221, 236, 531, 571
SatI GCNGC 3 cut(s) 214, 332, 353
Sau3AI GATC 1 cut(s) 205
SchI GAGTC 2 cut(s) 316, 461
SfaNI GCATC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 290
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 4 cut(s) 166, 220, 290, 304
SmoI CTYRAG 4 cut(s) 166, 220, 290, 304
Sse9I AATT 6 cut(s) 148, 195, 244, 326, 472, 567
SspI AATATT 1 cut(s) 519
SspMI CTAG 2 cut(s) 110, 161
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 2 cut(s) 109, 387
TaqI TCGA 4 cut(s) 146, 291, 432, 480
TasI AATT 6 cut(s) 148, 195, 244, 326, 472, 567
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 3 cut(s) 73, 482, 546
Tru1I TTAA 4 cut(s) 221, 236, 531, 571
Tru9I TTAA 4 cut(s) 221, 236, 531, 571
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 3 cut(s) 213, 331, 352
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 4 cut(s) 17, 46, 83, 567
TspGWI ACGGA 2 cut(s) 204, 428
TspRI CASTG 1 cut(s) 414
Vha464I CTTAAG 1 cut(s) 220
XapI RAATTY 2 cut(s) 148, 567
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 2 cut(s) 110, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.