Rmu_co8344485.1_g000001

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8344485.1
OG0000129
Physical Location & Seq
Forward (+)
1 .. 972
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8344485.1_g000001.1.cds

Sequence Viewer

Length: 719 bp
acttagacattgggtgtcctgatgttcgtatcatagggatttgtgggatgggtggtatcggtaagacaactgttgcacaagtggtttttgaaagggtacaagctcagtttgaaggttgcagctttcttgagaatgttagagaggaaacagaaaagcaaggtgcaattcatttacaagagcaacttcttttgaacttgctgaattgtaatgtaaatgtacagaccacaaaaatgggaaaagatataatcaggcatagactatgtactaaaagggttcttctcattcttgatgatgtggatcaagaagaacaattggaagcattgtgtaatcgcacttggtttggtccagggagtaggatcatcctaacatcaagagatgaacaattgctcagtttatttagagtggataaagtatacaaggtgaatccattaactgcttgcgaagctcttgagctctttggtatgaaagcctttaagaaagaccagctggttgggaaagattttctcaagctatccaaggaatttttgaaatatgctaatggtcttccattagctattaaagttttgggttcctctgtttatgcgaattggggatgcatgacttggtacaagaactgggttgggatattgttcgtcaagaaagtcctgaagagcccgaaaatcgtagcaggttgtggcttgccgatgaaatcatctatgttcttggtcgaagtaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

238

Amino Acids

26.79

Weight (kDa)

8.92

Isoelectric Point (pI)

25.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 658
AccI GTMKAC 1 cut(s) 413
AclWI GGATC 2 cut(s) 305, 364
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 667
AfaI GTAC 4 cut(s) 98, 218, 264, 607
AgsI TTSAA 4 cut(s) 91, 112, 192, 528
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 7 cut(s) 103, 122, 445, 453, 486, 510, 553
AluI AGCT 7 cut(s) 103, 122, 445, 453, 486, 510, 553
Alw21I GWGCWC 1 cut(s) 455
AlwI GGATC 2 cut(s) 305, 364
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 520
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 432
AvaII GGWCC 1 cut(s) 343
BanII GRGCYC 2 cut(s) 455, 655
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 658
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 1 cut(s) 347
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 1 cut(s) 583
BmuI ACTGGG 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 535
BpuEI CTTGAG 3 cut(s) 148, 469, 490
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 346, 515
Bse1I ACTGG 1 cut(s) 619
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 346, 515
BseGI GGATG 3 cut(s) 53, 359, 598
BseJI GATNNNNATC 1 cut(s) 296
BseMII CTCAG 2 cut(s) 118, 402
BseNI ACTGG 1 cut(s) 619
BseXI GCAGC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 455, 655
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 2 cut(s) 297, 356
BspCNI CTCAG 2 cut(s) 117, 401
BspLI GGNNCC 1 cut(s) 570
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 2 cut(s) 305, 364
BspQI GCTCTTC 1 cut(s) 643
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 619
BssECI CCNNGG 2 cut(s) 346, 515
BssMI GATC 2 cut(s) 297, 356
BssNAI GTATAC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 515
Bst1107I GTATAC 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 643
BstAUI TGTACA 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 438, 679
BstDEI CTNAG 3 cut(s) 3, 104, 388
BstF5I GGATG 3 cut(s) 53, 359, 598
BstKTI GATC 2 cut(s) 300, 359
BstMBI GATC 2 cut(s) 297, 356
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 535
BstXI CCANNNNNNTGG 2 cut(s) 231, 490
BstZ17I GTATAC 1 cut(s) 414
BtsCI GGATG 3 cut(s) 53, 359, 598
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 2 cut(s) 438, 679
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 4 cut(s) 97, 217, 263, 606
CviAII CATG 1 cut(s) 597
CviQI GTAC 4 cut(s) 97, 217, 263, 606
DdeI CTNAG 3 cut(s) 3, 104, 388
DpnI GATC 2 cut(s) 299, 358
DpnII GATC 2 cut(s) 297, 356
Eam1104I CTCTTC 1 cut(s) 643
EarI CTCTTC 1 cut(s) 643
Ecl136II GAGCTC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 515
Eco24I GRGCYC 2 cut(s) 455, 655
Eco47I GGWCC 1 cut(s) 343
Eco53kI GAGCTC 1 cut(s) 453
Eco57I CTGAAG 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 2 cut(s) 455, 655
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 1 cut(s) 600
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 1 cut(s) 596
FblI GTMKAC 1 cut(s) 413
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 3 cut(s) 60, 346, 605
FriOI GRGCYC 2 cut(s) 455, 655
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 600
HinfI GANTC 1 cut(s) 423
HphI GGTGA 1 cut(s) 432
Hpy166II GTNNAC 1 cut(s) 414
Hpy188III TCNNGA 8 cut(s) 19, 127, 286, 301, 371, 448, 636, 645
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 76, 119, 163, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpyF3I CTNAG 3 cut(s) 3, 104, 388
Hsp92II CATG 1 cut(s) 600
Kzo9I GATC 2 cut(s) 297, 356
LguI GCTCTTC 1 cut(s) 643
LpnPI CCDG 9 cut(s) 32, 234, 332, 359, 472, 496, 600, 653, 658
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 583
MalI GATC 2 cut(s) 299, 358
MboI GATC 2 cut(s) 297, 356
MboII GAAGA 4 cut(s) 268, 316, 535, 660
MfeI CAATTG 2 cut(s) 310, 382
MhlI GDGCHC 2 cut(s) 455, 655
MluCI AATT 6 cut(s) 164, 201, 310, 382, 520, 585
MnlI CCTC 2 cut(s) 135, 582
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 3 cut(s) 430, 473, 557
MslI CAYNNNNRTG 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 486
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 2 cut(s) 310, 382
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 442
NdeII GATC 2 cut(s) 297, 356
NlaIII CATG 1 cut(s) 600
NlaIV GGNNCC 1 cut(s) 570
NsiI ATGCAT 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 643
PfeI GAWTC 1 cut(s) 423
PkrI GCNGC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 486
RsaI GTAC 4 cut(s) 98, 218, 264, 607
RsaNI GTAC 4 cut(s) 97, 217, 263, 606
RseI CAYNNNNRTG 1 cut(s) 229
SacI GAGCTC 1 cut(s) 455
SapI GCTCTTC 1 cut(s) 643
SaqAI TTAA 3 cut(s) 430, 473, 557
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 297, 356
Sau96I GGNCC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 455, 655
SfaNI GCATC 1 cut(s) 583
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 229
SmlI CTYRAG 3 cut(s) 127, 448, 505
SmoI CTYRAG 3 cut(s) 127, 448, 505
Sse9I AATT 6 cut(s) 164, 201, 310, 382, 520, 585
SstI GAGCTC 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 707
TasI AATT 6 cut(s) 164, 201, 310, 382, 520, 585
TatI WGTACW 2 cut(s) 216, 262
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 3 cut(s) 430, 473, 557
Tru9I TTAA 3 cut(s) 430, 473, 557
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 157, 392, 478, 700
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.