Rmu_co8381261.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8381261.1
OG0000129
Physical Location & Seq
Forward (+)
355 .. 1169
815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8381261.1_g000001.1.cds

Sequence Viewer

Length: 815 bp
atgtcaactccagacttcactgaggttcctgaacttgaagtgttagtgcttcgaaattgctcaagcttggtggaggttcacccgtctcttggatttctgaagaaacttcgctgtttggatatgacaaattgcaagtctattgagagccttccacctttcactagcttggaatcccttgaaaaattatggctttcactctgttcaggattgaagaagtttccagaaattgaaggaaatatgaaaagcttgctggagctttatgtggatgggaccagcattgaggaattgcctccatcaattgaacgcttgactggtcttaccatgttggatatgacagactgtaaaaaccttttgcatcttcccaataacattgggtgcttgacatctttaaaaagtctctatctgacaggttgctcaaaaattgatgagatacccgagaatctgaatggtatgaaatgtctggagaagcttctcattggtcgaacttccataagggagttatctttcattgtaggcatgaaaaatctacagtctctatcctgccgaggatgtaaatgtctagtttcagaatcatgcaaagctctggcttcgttatcgaatttgatagagctagacttgagttattgcaatctgatggatggagcatttctcaatgattttggcagcctaatctccttaacattgttagatttgagtggtaattgctttgcgcgattacctgaaagtatctctcaactctcaaagctcgacactctgcacttgaggaattgcggacagcttcaagtgctgcccaagaagcttccgttaagtcttca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

271

Amino Acids

29.94

Weight (kDa)

5.38

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000129)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_2g02050 FvH4_5g38500 FvH4_5g38520 FvH4_5g38540 FvH4_5g38540 FvH4_5g38540 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38561 FvH4_5g38600 FvH4_5g38620 FvH4_5g38630 FvH4_5g38660 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38680 FvH4_5g38760
malus_domestica MD05G1002100.v1.1 MD05G1002200.v1.1 MD05G1002300.v1.1 MD05G1002400.v1.1 MD07G1123900.v1.1 MD17G1192900.v1.1
prunus_persica Prupe.2G059400_v2.0.a1 Prupe.8G005400_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005500_v2.0.a1 Prupe.8G005600_v2.0.a1 Prupe.8G102900_v2.0.a1
pyrus_communis pycom05g00210 pycom05g00220 pycom05g00230 pycom07g11690
rosa_chinensis RchiOBHm_Chr6g0250791 RchiOBHm_Chr7g0223661 RchiOBHm_Chr7g0240571 RchiOBHm_Chr7g0240581 RchiOBHm_Chr7g0240591 RchiOBHm_Chr7g0240641 RchiOBHm_Chr7g0240681
rosa_laevigata RLG00000000629 RLG00000000630 RLG00000000632 RLG00000000636 RLG00000000637 RLG00000000638 RLG00000000639 RLG00000000640 RLG00000000648 RLG00000000657 RLG00000000661 RLG00000000664 RLG00000000666 RLG00000000669 RLG00000000672 RLG00000000673 RLG00000001954 RLG00000001970 RLG00000007791 RLG00000012997 RLG00000018666
rosa_multiflora Rmu_co8160218.1_g000001 Rmu_co8184794.1_g000001 Rmu_co8275571.1_g000001 Rmu_co8344485.1_g000001 Rmu_co8381261.1_g000001 Rmu_co8395583.1_g000001 Rmu_sc0001070.1_g000010 Rmu_sc0001070.1_g000016 Rmu_sc0001070.1_g000024 Rmu_sc0001070.1_g000025 Rmu_sc0001070.1_g000031 Rmu_sc0001209.1_g000012 Rmu_sc0001483.1_g000003 Rmu_sc0001483.1_g000013 Rmu_sc0001483.1_g000015 Rmu_sc0001921.1_g000013 Rmu_sc0001921.1_g000015 Rmu_sc0001921.1_g000019 Rmu_sc0001921.1_g000027 Rmu_sc0001921.1_g000028 Rmu_sc0001921.1_g000030 Rmu_sc0001924.1_g000001 Rmu_sc0001924.1_g000004 Rmu_sc0002517.1_g000003 Rmu_sc0002517.1_g000014 Rmu_sc0002551.1_g000001 Rmu_sc0002551.1_g000010 Rmu_sc0002551.1_g000031 Rmu_sc0002551.1_g000039 Rmu_sc0002551.1_g000040 Rmu_sc0004799.1_g000007 Rmu_sc0005071.1_g000006 Rmu_sc0005071.1_g000013 Rmu_sc0005071.1_g000019 Rmu_sc0005327.1_g000001 Rmu_sc0005327.1_g000002 Rmu_sc0009028.1_g000001 Rmu_sc0013246.1_g000001 Rmu_sc0014401.1_g000001 Rmu_sc0019569.1_g000001 Rmu_sc0019569.1_g000003 Rmu_sc0019569.1_g000004 Rmu_sc0020672.1_g000001 Rmu_sc0023716.1_g000001 Rmu_sc0037115.1_g000001 Rmu_sc0038364.1_g000001 Rmu_ssc0000011.1_g000037
rosa_roxburghii Rroxscaffold_2G00121840 Rroxscaffold_2G00121850 Rroxscaffold_2G00121870 Rroxscaffold_3G00219670 Rroxscaffold_3G00219690 Rroxscaffold_3G00219710 Rroxscaffold_3G00219770 Rroxscaffold_3G00219810 Rroxscaffold_3G00219820 Rroxscaffold_3G00219850 Rroxscaffold_3G00219870 Rroxscaffold_3G00231380 Rroxscaffold_3G00235440 Rroxscaffold_3G00236130 Rroxscaffold_3G00236140 Rroxscaffold_3G00236270 Rroxscaffold_3G00236280 Rroxscaffold_3G00240810
rosa_rugosa Rorug02G0237100 Rorug07G0218500 Rorug07G0218600 Rorug07G0218600 Rorug07G0218700 Rorug07G0323600 Rorug07G0337100 Rorug07G0337200 Rorug07G0337500 Rorug07G0337700 Rorug07G0337800 Rorug07G0337800 Rorug07G0338000 Rorug07G0338100 Rorug07G0338200 Rorug07G0338300
rosa_samantha Rh1BG151400 Rh2CG282500 Rh2DG318800 Rh2DG318900 Rh2DG319100 Rh5BG508500 Rh6BG254000 Rh6DG245200 Rh7AG361400 Rh7AG491500 Rh7AG492000 Rh7AG492300 Rh7AG492400 Rh7AG492500 Rh7AG492800 Rh7BG464100 Rh7BG464500 Rh7BG464700 Rh7BG464800 Rh7CG379900 Rh7CG507500 Rh7CG508000 Rh7CG508700 Rh7CG508900 Rh7CG509900 Rh7CG510400 Rh7CG510500 Rh7CG510600 Rh7CG510700 Rh7CG511000 Rh7CG511200
rosa_wichuraiana Rw0G005770 Rw7G041180 Rw7G041190 Rw7G041250 Rw7G041270 Rw7G041280 Rw7G041300 Rw7G041330 Rw7G041410 Rw7G041420 Rw7G041440 Rw7G041460 Rw7G041470 Rw7G041480 Rw7G041500 Rw7G041530 Rw7G041540 Rw7G041570 Rw7G041580 Rw7G041600 Rw7G041630 Rw7G041660 Rw7G041680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 712
AciI CCGC 1 cut(s) 771
AcsI RAATTY 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 6 cut(s) 38, 179, 211, 230, 302, 782
Alw26I GTCTC 3 cut(s) 90, 401, 537
Ama87I CYCGRG 1 cut(s) 434
ApeKI GCWGC 2 cut(s) 663, 787
ApoI RAATTY 1 cut(s) 598
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 803
BbvI GCAGC 2 cut(s) 675, 774
BccI CCATC 4 cut(s) 260, 301, 628, 632
BcoDI GTCTC 3 cut(s) 90, 401, 537
BfaI CTAG 3 cut(s) 162, 560, 611
BfmI CTRYAG 1 cut(s) 527
BisI GCNGC 2 cut(s) 664, 788
BlsI GCNGC 2 cut(s) 665, 789
Bme18I GGWCC 1 cut(s) 270
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 27, 271
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 803
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpmI CTGGAG 2 cut(s) 272, 482
Bpu14I TTCGAA 1 cut(s) 52
BpuEI CTTGAG 3 cut(s) 46, 637, 781
BsaJI CCNNGG 1 cut(s) 544
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 3 cut(s) 271, 554, 643
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 316
BseXI GCAGC 2 cut(s) 675, 774
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 1 cut(s) 712
BsiHKCI CYCGRG 1 cut(s) 434
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 3 cut(s) 90, 401, 537
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 434
Bsp119I TTCGAA 1 cut(s) 52
BspACI CCGC 1 cut(s) 771
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 712
BspLI GGNNCC 2 cut(s) 27, 271
BspT104I TTCGAA 1 cut(s) 52
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 544
Bst4CI ACNGT 2 cut(s) 341, 531
BstBI TTCGAA 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 271, 554, 643
BstFNI CGCG 1 cut(s) 712
BstHHI GCGC 1 cut(s) 712
BstMAI GTCTC 3 cut(s) 90, 401, 537
BstMWI GCNNNNNNNGC 2 cut(s) 784, 796
BstSFI CTRYAG 1 cut(s) 527
BstUI CGCG 1 cut(s) 712
BstV1I GCAGC 2 cut(s) 675, 774
BstV2I GAAGAC 1 cut(s) 803
BtsCI GGATG 3 cut(s) 271, 554, 643
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 712
Cfr13I GGNCC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 3 cut(s) 322, 517, 573
DdeI CTNAG 1 cut(s) 21
DraI TTTAAA 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 434
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 3 cut(s) 325, 520, 576
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 321, 516, 572
Fnu4HI GCNGC 2 cut(s) 664, 788
FokI GGATG 3 cut(s) 278, 561, 650
Fsp4HI GCNGC 2 cut(s) 664, 788
FspBI CTAG 3 cut(s) 162, 560, 611
GlaI GCGC 1 cut(s) 711
GluI GCNGC 2 cut(s) 664, 788
GsuI CTGGAG 2 cut(s) 272, 482
HhaI GCGC 1 cut(s) 712
Hin1II CATG 3 cut(s) 325, 520, 576
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 4 cut(s) 64, 244, 467, 797
HinfI GANTC 3 cut(s) 170, 439, 569
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 6, 79
Hpy188I TCNGA 5 cut(s) 99, 405, 444, 568, 633
Hpy188III TCNNGA 5 cut(s) 11, 29, 204, 221, 461
Hpy8I GTNNAC 2 cut(s) 6, 79
HpyAV CCTTC 2 cut(s) 158, 224
HpyCH4III ACNGT 2 cut(s) 341, 531
HpyCH4V TGCA 5 cut(s) 132, 355, 576, 627, 757
HpyF10VI GCNNNNNNNGC 2 cut(s) 784, 796
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 3 cut(s) 325, 520, 576
HspAI GCGC 1 cut(s) 710
LmnI GCTCC 2 cut(s) 253, 641
Lsp1109I GCAGC 2 cut(s) 675, 774
LweI GCATC 1 cut(s) 364
MaeI CTAG 3 cut(s) 162, 560, 611
MboII GAAGA 4 cut(s) 112, 223, 350, 803
MfeI CAATTG 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 6 cut(s) 16, 67, 274, 300, 539, 756
MseI TTAA 3 cut(s) 389, 677, 806
MunI CAATTG 1 cut(s) 297
MvnI CGCG 1 cut(s) 712
MwoI GCNNNNNNNGC 2 cut(s) 784, 796
NlaIII CATG 3 cut(s) 325, 520, 576
NlaIV GGNNCC 2 cut(s) 27, 271
NmeAIII GCCGAG 1 cut(s) 569
NspV TTCGAA 1 cut(s) 52
PfeI GAWTC 3 cut(s) 170, 439, 569
PkrI GCNGC 2 cut(s) 665, 789
PspN4I GGNNCC 2 cut(s) 27, 271
PspPI GGNCC 1 cut(s) 270
SaqAI TTAA 3 cut(s) 389, 677, 806
SatI GCNGC 2 cut(s) 664, 788
Sau96I GGNCC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 527
SfuI TTCGAA 1 cut(s) 52
SinI GGWCC 1 cut(s) 270
SmlI CTYRAG 3 cut(s) 61, 616, 760
SmoI CTYRAG 3 cut(s) 61, 616, 760
SsiI CCGC 1 cut(s) 771
SspMI CTAG 3 cut(s) 162, 560, 611
TaaI ACNGT 2 cut(s) 341, 531
TaqI TCGA 4 cut(s) 52, 481, 596, 747
TfiI GAWTC 3 cut(s) 170, 439, 569
Tru1I TTAA 3 cut(s) 389, 677, 806
Tru9I TTAA 3 cut(s) 389, 677, 806
TscAI CASTG 1 cut(s) 25
TseI GCWGC 2 cut(s) 663, 787
TspDTI ATGAA 4 cut(s) 254, 467, 496, 533
TspGWI ACGGA 1 cut(s) 792
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 1 cut(s) 598
XspI CTAG 3 cut(s) 162, 560, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.