resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 92 - 263 | 2.2e-55 | TIR domain |
| TIR_2 | PF13676 | 94 - 195 | 6e-16 | TIR domain |
| NB-ARC | PF00931 | 274 - 440 | 7.6e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 509 - 577 | 6.8e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 750 - 889 | 9.6e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 768 - 856 | 7.2e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 916 - 991 | 1.2e-06 | Leucine-rich repeat region |
| C-JID | PF20160 | 1097 - 1235 | 9.9e-09 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 4003, 4709 |
| Acc16I | TGCGCA | 1 cut(s) | 4066 |
| AccB1I | GGYRCC | 1 cut(s) | 2953 |
| AccI | GTMKAC | 4 cut(s) | 1431, 2141, 3713, 3995 |
| AccII | CGCG | 1 cut(s) | 4219 |
| AccIII | TCCGGA | 2 cut(s) | 856, 1621 |
| AciI | CCGC | 9 cut(s) | 44, 310, 631, 2616, 3535, 3629, 4217, 4219, 4551 |
| AclWI | GGATC | 8 cut(s) | 181, 560, 603, 1202, 2713, 3245, 3807, 4146 |
| AcoI | YGGCCR | 1 cut(s) | 4321 |
| AcuI | CTGAAG | 9 cut(s) | 183, 1271, 1299, 1364, 1761, 2027, 2930, 3120, 4264 |
| AcyI | GRCGYC | 1 cut(s) | 4628 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1621, 2225, 4855 |
| AflII | CTTAAG | 1 cut(s) | 4885 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 539 |
| AhlI | ACTAGT | 1 cut(s) | 2408 |
| AjnI | CCWGG | 8 cut(s) | 1183, 1644, 1747, 2595, 3727, 4294, 4335, 4853 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1526, 1558, 3638, 3670 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3408, 3440 |
| Alw21I | GWGCWC | 2 cut(s) | 2977, 3479 |
| Alw26I | GTCTC | 7 cut(s) | 163, 366, 2251, 2498, 2537, 3099, 4831 |
| Alw44I | GTGCAC | 1 cut(s) | 3475 |
| AlwI | GGATC | 8 cut(s) | 181, 560, 603, 1202, 2713, 3245, 3807, 4146 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1975 |
| Ama87I | CYCGRG | 3 cut(s) | 386, 2912, 4146 |
| Aor13HI | TCCGGA | 2 cut(s) | 856, 1621 |
| AoxI | GGCC | 2 cut(s) | 1378, 4321 |
| ApaLI | GTGCAC | 1 cut(s) | 3475 |
| ApeKI | GCWGC | 4 cut(s) | 957, 2058, 2829, 4015 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4712, 4744 |
| AseI | ATTAAT | 1 cut(s) | 1488 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1284, 1338, 3509 |
| AspLEI | GCGC | 1 cut(s) | 4067 |
| AspS9I | GGNCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| AsuHPI | GGTGA | 5 cut(s) | 754, 809, 1270, 2207, 4136 |
| AsuII | TTCGAA | 1 cut(s) | 1028 |
| AvaI | CYCGRG | 3 cut(s) | 386, 2912, 4146 |
| AvaII | GGWCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| BaeGI | GKGCMC | 3 cut(s) | 2958, 3479, 4906 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1691, 1724 |
| BanI | GGYRCC | 1 cut(s) | 2953 |
| BauI | CACGAG | 1 cut(s) | 4812 |
| BbsI | GAAGAC | 3 cut(s) | 24, 589, 3849 |
| Bbv12I | GWGCWC | 2 cut(s) | 2977, 3479 |
| BbvI | GCAGC | 4 cut(s) | 969, 2045, 2841, 4002 |
| BceAI | ACGGC | 3 cut(s) | 2120, 4308, 4738 |
| BciT130I | CCWGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| BclI | TGATCA | 2 cut(s) | 1798, 3199 |
| BcoDI | GTCTC | 7 cut(s) | 163, 366, 2251, 2498, 2537, 3099, 4831 |
| BcuI | ACTAGT | 1 cut(s) | 2408 |
| BfmI | CTRYAG | 3 cut(s) | 1818, 2700, 4894 |
| BfrI | CTTAAG | 1 cut(s) | 4885 |
| BglII | AGATCT | 2 cut(s) | 3355, 4936 |
| BisI | GCNGC | 5 cut(s) | 958, 2059, 2830, 3630, 4016 |
| BlsI | GCNGC | 5 cut(s) | 959, 2060, 2831, 3631, 4017 |
| Bme1390I | CCNGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| Bme18I | GGWCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 539 |
| BmeT110I | CYCGRG | 3 cut(s) | 386, 2912, 4146 |
| BmgT120I | GGNCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| BmiI | GGNNCC | 3 cut(s) | 2163, 2809, 2955 |
| BmrFI | CCNGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| BmrI | ACTGGG | 3 cut(s) | 542, 2493, 3261 |
| BmuI | ACTGGG | 3 cut(s) | 542, 2493, 3261 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1989, 4662 |
| BpiI | GAAGAC | 3 cut(s) | 24, 589, 3849 |
| BpmI | CTGGAG | 5 cut(s) | 2130, 2408, 2618, 3336, 3832 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3863 |
| Bpu14I | TTCGAA | 1 cut(s) | 1028 |
| BpuEI | CTTGAG | 7 cut(s) | 986, 2192, 2219, 2330, 3920, 4175, 4748 |
| Bsa29I | ATCGAT | 1 cut(s) | 401 |
| BsaAI | YACGTR | 2 cut(s) | 273, 3126 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2793 |
| BsaHI | GRCGYC | 1 cut(s) | 4628 |
| BsaI | GGTCTC | 1 cut(s) | 163 |
| BsaWI | WCCGGW | 5 cut(s) | 260, 856, 1621, 2023, 4371 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1233, 1263, 1626, 1656 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1621, 2225, 4855 |
| Bse3DI | GCAATG | 2 cut(s) | 1548, 4176 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2793 |
| BseAI | TCCGGA | 2 cut(s) | 856, 1621 |
| BseBI | CCWGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| BseCI | ATCGAT | 1 cut(s) | 401 |
| BseJI | GATNNNNATC | 1 cut(s) | 2793 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1621, 2225, 4855 |
| BseMI | GCAATG | 2 cut(s) | 1548, 4176 |
| BseRI | GAGGAG | 1 cut(s) | 1826 |
| BseSI | GKGCMC | 3 cut(s) | 2958, 3479, 4906 |
| BseXI | GCAGC | 4 cut(s) | 969, 2045, 2841, 4002 |
| BsgI | GTGCAG | 4 cut(s) | 897, 1020, 1251, 4320 |
| Bsh1236I | CGCG | 1 cut(s) | 4219 |
| BshFI | GGCC | 2 cut(s) | 1380, 4323 |
| BshNI | GGYRCC | 1 cut(s) | 2953 |
| BshVI | ATCGAT | 1 cut(s) | 401 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2977, 3479 |
| BsiHKCI | CYCGRG | 3 cut(s) | 386, 2912, 4146 |
| BsiSI | CCGG | 6 cut(s) | 16, 261, 857, 1622, 2024, 4372 |
| BsiWI | CGTACG | 1 cut(s) | 273 |
| BslFI | GGGAC | 7 cut(s) | 546, 1997, 2293, 2419, 3429, 4129, 4615 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1621, 2225, 4855 |
| BsmAI | GTCTC | 7 cut(s) | 163, 366, 2251, 2498, 2537, 3099, 4831 |
| BsmBI | CGTCTC | 2 cut(s) | 366, 2498 |
| BsmFI | GGGAC | 7 cut(s) | 546, 1997, 2293, 2419, 3429, 4129, 4615 |
| BsmI | GAATGC | 4 cut(s) | 2050, 2103, 2283, 2597 |
| BsnI | GGCC | 2 cut(s) | 1380, 4323 |
| Bso31I | GGTCTC | 1 cut(s) | 163 |
| BsoBI | CYCGRG | 3 cut(s) | 386, 2912, 4146 |
| Bsp119I | TTCGAA | 1 cut(s) | 1028 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2958, 2977, 3479, 4906 |
| Bsp13I | TCCGGA | 2 cut(s) | 856, 1621 |
| Bsp1407I | TGTACA | 3 cut(s) | 1054, 1633, 4209 |
| Bsp19I | CCATGG | 2 cut(s) | 528, 4769 |
| BspACI | CCGC | 9 cut(s) | 44, 310, 631, 2616, 3535, 3629, 4217, 4219, 4551 |
| BspANI | GGCC | 2 cut(s) | 1380, 4323 |
| BspDI | ATCGAT | 1 cut(s) | 401 |
| BspEI | TCCGGA | 2 cut(s) | 856, 1621 |
| BspFNI | CGCG | 1 cut(s) | 4219 |
| BspLI | GGNNCC | 3 cut(s) | 2163, 2809, 2955 |
| BspMAI | CTGCAG | 1 cut(s) | 1822 |
| BspPI | GGATC | 8 cut(s) | 181, 560, 603, 1202, 2713, 3245, 3807, 4146 |
| BspQI | GCTCTTC | 2 cut(s) | 1290, 1737 |
| BspT104I | TTCGAA | 1 cut(s) | 1028 |
| BspT107I | GGYRCC | 1 cut(s) | 2953 |
| BspTI | CTTAAG | 1 cut(s) | 4885 |
| BspTNI | GGTCTC | 1 cut(s) | 163 |
| BsrDI | GCAATG | 2 cut(s) | 1548, 4176 |
| BsrGI | TGTACA | 3 cut(s) | 1054, 1633, 4209 |
| BssNAI | GTATAC | 1 cut(s) | 3714 |
| BssNI | GRCGYC | 1 cut(s) | 4628 |
| BssSI | CACGAG | 1 cut(s) | 4812 |
| BssT1I | CCWWGG | 2 cut(s) | 528, 4769 |
| Bst1107I | GTATAC | 1 cut(s) | 3714 |
| Bst2BI | CACGAG | 1 cut(s) | 4812 |
| Bst2UI | CCWGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| Bst6I | CTCTTC | 2 cut(s) | 1290, 1737 |
| BstACI | GRCGYC | 1 cut(s) | 4628 |
| BstAFI | CTTAAG | 1 cut(s) | 4885 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1817, 4073 |
| BstAUI | TGTACA | 3 cut(s) | 1054, 1633, 4209 |
| BstBAI | YACGTR | 2 cut(s) | 273, 3126 |
| BstBI | TTCGAA | 1 cut(s) | 1028 |
| BstC8I | GCNNGC | 7 cut(s) | 44, 2384, 2988, 3785, 4221, 4245, 4379 |
| BstDSI | CCRYGG | 4 cut(s) | 528, 3621, 4217, 4769 |
| BstFNI | CGCG | 1 cut(s) | 4219 |
| BstHHI | GCGC | 1 cut(s) | 4067 |
| BstMAI | GTCTC | 7 cut(s) | 163, 366, 2251, 2498, 2537, 3099, 4831 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 479, 509, 628, 1817, 3404, 4064, 4073 |
| BstNI | CCWGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| BstNSI | RCATGY | 2 cut(s) | 1557, 4381 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1989, 4662 |
| BstSCI | CCNGG | 8 cut(s) | 1183, 1644, 1747, 2595, 3727, 4294, 4335, 4853 |
| BstSFI | CTRYAG | 3 cut(s) | 1818, 2700, 4894 |
| BstSLI | GKGCMC | 3 cut(s) | 2958, 3479, 4906 |
| BstUI | CGCG | 1 cut(s) | 4219 |
| BstV1I | GCAGC | 4 cut(s) | 969, 2045, 2841, 4002 |
| BstV2I | GAAGAC | 3 cut(s) | 24, 589, 3849 |
| BstX2I | RGATCY | 3 cut(s) | 3355, 4138, 4936 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1328, 3674 |
| BstYI | RGATCY | 3 cut(s) | 3355, 4138, 4936 |
| BstZ17I | GTATAC | 1 cut(s) | 3714 |
| Bsu15I | ATCGAT | 1 cut(s) | 401 |
| BsuRI | GGCC | 2 cut(s) | 1380, 4323 |
| BsuTUI | ATCGAT | 1 cut(s) | 401 |
| BtgI | CCRYGG | 4 cut(s) | 528, 3621, 4217, 4769 |
| BtsI | GCAGTG | 3 cut(s) | 1008, 1815, 3209 |
| Cac8I | GCNNGC | 7 cut(s) | 44, 2384, 2988, 3785, 4221, 4245, 4379 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1975 |
| CfoI | GCGC | 1 cut(s) | 4067 |
| Cfr13I | GGNCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| Cfr42I | CCGCGG | 1 cut(s) | 4220 |
| ClaI | ATCGAT | 1 cut(s) | 401 |
| CseI | GACGC | 3 cut(s) | 680, 2480, 4617 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3606, 3641 |
| DraI | TTTAAA | 3 cut(s) | 1564, 2253, 4111 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 4003, 4709 |
| DriI | GACNNNNNGTC | 1 cut(s) | 539 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 4003, 4709 |
| EaeI | YGGCCR | 1 cut(s) | 4321 |
| Eam1104I | CTCTTC | 2 cut(s) | 1290, 1737 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 539 |
| EarI | CTCTTC | 2 cut(s) | 1290, 1737 |
| EciI | GGCGGA | 2 cut(s) | 2631, 3524 |
| Eco130I | CCWWGG | 2 cut(s) | 528, 4769 |
| Eco31I | GGTCTC | 1 cut(s) | 163 |
| Eco32I | GATATC | 2 cut(s) | 3274, 4789 |
| Eco47I | GGWCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| Eco57I | CTGAAG | 9 cut(s) | 183, 1271, 1299, 1364, 1761, 2027, 2930, 3120, 4264 |
| Eco88I | CYCGRG | 3 cut(s) | 386, 2912, 4146 |
| EcoRII | CCWGG | 8 cut(s) | 1183, 1644, 1747, 2595, 3727, 4294, 4335, 4853 |
| EcoRV | GATATC | 2 cut(s) | 3274, 4789 |
| EcoT14I | CCWWGG | 2 cut(s) | 528, 4769 |
| EcoT22I | ATGCAT | 2 cut(s) | 1692, 2052 |
| ErhI | CCWWGG | 2 cut(s) | 528, 4769 |
| Esp3I | CGTCTC | 2 cut(s) | 366, 2498 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1005, 1037, 4380, 4412 |
| FaqI | GGGAC | 7 cut(s) | 546, 1997, 2293, 2419, 3429, 4129, 4615 |
| FauI | CCCGC | 3 cut(s) | 51, 317, 4212 |
| FbaI | TGATCA | 2 cut(s) | 1798, 3199 |
| FblI | GTMKAC | 4 cut(s) | 1431, 2141, 3713, 3995 |
| Fnu4HI | GCNGC | 5 cut(s) | 958, 2059, 2830, 3630, 4016 |
| Fsp4HI | GCNGC | 5 cut(s) | 958, 2059, 2830, 3630, 4016 |
| FspAI | RTGCGCAY | 1 cut(s) | 4066 |
| FspI | TGCGCA | 1 cut(s) | 4066 |
| GlaI | GCGC | 1 cut(s) | 4066 |
| GluI | GCNGC | 5 cut(s) | 958, 2059, 2830, 3630, 4016 |
| GsuI | CTGGAG | 5 cut(s) | 2130, 2408, 2618, 3336, 3832 |
| HaeIII | GGCC | 2 cut(s) | 1380, 4323 |
| HapII | CCGG | 6 cut(s) | 16, 261, 857, 1622, 2024, 4372 |
| HgaI | GACGC | 3 cut(s) | 680, 2480, 4617 |
| HhaI | GCGC | 1 cut(s) | 4067 |
| Hin1I | GRCGYC | 1 cut(s) | 4628 |
| Hin6I | GCGC | 1 cut(s) | 4065 |
| HinP1I | GCGC | 1 cut(s) | 4065 |
| HincII | GTYRAC | 2 cut(s) | 2142, 3996 |
| HindII | GTYRAC | 2 cut(s) | 2142, 3996 |
| HindIII | AAGCTT | 3 cut(s) | 2380, 2603, 2960 |
| HpaII | CCGG | 6 cut(s) | 16, 261, 857, 1622, 2024, 4372 |
| HphI | GGTGA | 5 cut(s) | 754, 809, 1270, 2207, 4136 |
| Hpy99I | CGWCG | 4 cut(s) | 241, 244, 1848, 3958 |
| HpyCH4IV | ACGT | 5 cut(s) | 272, 1756, 1843, 3125, 4929 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 479, 509, 628, 1817, 3404, 4064, 4073 |
| HpySE526I | ACGT | 5 cut(s) | 272, 1756, 1843, 3125, 4929 |
| Hsp92I | GRCGYC | 1 cut(s) | 4628 |
| HspAI | GCGC | 1 cut(s) | 4065 |
| Kpn2I | TCCGGA | 2 cut(s) | 856, 1621 |
| Ksp22I | TGATCA | 2 cut(s) | 1798, 3199 |
| KspI | CCGCGG | 1 cut(s) | 4220 |
| LguI | GCTCTTC | 2 cut(s) | 1290, 1737 |
| LmnI | GCTCC | 1 cut(s) | 2389 |
| Lsp1109I | GCAGC | 4 cut(s) | 969, 2045, 2841, 4002 |
| MaeII | ACGT | 5 cut(s) | 272, 1756, 1843, 3125, 4929 |
| MaeIII | GTNAC | 8 cut(s) | 175, 202, 1965, 2477, 3207, 3385, 4176, 4858 |
| MfeI | CAATTG | 4 cut(s) | 1148, 2932, 3045, 4071 |
| MflI | RGATCY | 3 cut(s) | 3355, 4138, 4936 |
| MhlI | GDGCHC | 4 cut(s) | 2958, 2977, 3479, 4906 |
| MmeI | TCCRAC | 3 cut(s) | 1309, 1864, 4585 |
| Mph1103I | ATGCAT | 2 cut(s) | 1692, 2052 |
| MroI | TCCGGA | 2 cut(s) | 856, 1621 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1284, 1338, 3509 |
| MslI | CAYNNNNRTG | 5 cut(s) | 822, 1067, 1892, 2400, 4477 |
| MspA1I | CMGCKG | 2 cut(s) | 1324, 4219 |
| MspCI | CTTAAG | 1 cut(s) | 4885 |
| MspI | CCGG | 6 cut(s) | 16, 261, 857, 1622, 2024, 4372 |
| MspR9I | CCNGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| MunI | CAATTG | 4 cut(s) | 1148, 2932, 3045, 4071 |
| Mva1269I | GAATGC | 4 cut(s) | 2050, 2103, 2283, 2597 |
| MvaI | CCWGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| MvnI | CGCG | 1 cut(s) | 4219 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 479, 509, 628, 1817, 3404, 4064, 4073 |
| NcoI | CCATGG | 2 cut(s) | 528, 4769 |
| NlaIV | GGNNCC | 3 cut(s) | 2163, 2809, 2955 |
| NmeAIII | GCCGAG | 1 cut(s) | 2705 |
| NmuCI | GTSAC | 2 cut(s) | 3207, 4176 |
| NsbI | TGCGCA | 1 cut(s) | 4066 |
| NsiI | ATGCAT | 2 cut(s) | 1692, 2052 |
| NspI | RCATGY | 2 cut(s) | 1557, 4381 |
| NspV | TTCGAA | 1 cut(s) | 1028 |
| PaeI | GCATGC | 1 cut(s) | 4381 |
| PaeR7I | CTCGAG | 2 cut(s) | 386, 2912 |
| PasI | CCCWGGG | 1 cut(s) | 3728 |
| PciSI | GCTCTTC | 2 cut(s) | 1290, 1737 |
| PctI | GAATGC | 4 cut(s) | 2050, 2103, 2283, 2597 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1284, 1338, 3509 |
| Pfl23II | CGTACG | 1 cut(s) | 273 |
| PfoI | TCCNGGA | 1 cut(s) | 1644 |
| PkrI | GCNGC | 5 cut(s) | 959, 2060, 2831, 3631, 4017 |
| Ppu21I | YACGTR | 2 cut(s) | 273, 3126 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1989, 4662 |
| PshBI | ATTAAT | 1 cut(s) | 1488 |
| Psp6I | CCWGG | 8 cut(s) | 1183, 1644, 1747, 2595, 3727, 4294, 4335, 4853 |
| PspGI | CCWGG | 8 cut(s) | 1183, 1644, 1747, 2595, 3727, 4294, 4335, 4853 |
| PspLI | CGTACG | 1 cut(s) | 273 |
| PspN4I | GGNNCC | 3 cut(s) | 2163, 2809, 2955 |
| PspPI | GGNCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 89, 121, 266, 298 |
| PstI | CTGCAG | 1 cut(s) | 1822 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1975 |
| PsuI | RGATCY | 3 cut(s) | 3355, 4138, 4936 |
| PvuII | CAGCTG | 1 cut(s) | 1324 |
| RseI | CAYNNNNRTG | 5 cut(s) | 822, 1067, 1892, 2400, 4477 |
| SacII | CCGCGG | 1 cut(s) | 4220 |
| SalI | GTCGAC | 2 cut(s) | 2140, 3994 |
| SapI | GCTCTTC | 2 cut(s) | 1290, 1737 |
| SatI | GCNGC | 5 cut(s) | 958, 2059, 2830, 3630, 4016 |
| Sau96I | GGNCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| ScrFI | CCNGG | 8 cut(s) | 1185, 1646, 1749, 2597, 3729, 4296, 4337, 4855 |
| SduI | GDGCHC | 4 cut(s) | 2958, 2977, 3479, 4906 |
| SfcI | CTRYAG | 3 cut(s) | 1818, 2700, 4894 |
| Sfr274I | CTCGAG | 2 cut(s) | 386, 2912 |
| Sfr303I | CCGCGG | 1 cut(s) | 4220 |
| SfuI | TTCGAA | 1 cut(s) | 1028 |
| SgrBI | CCGCGG | 1 cut(s) | 4220 |
| SinI | GGWCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| SlaI | CTCGAG | 2 cut(s) | 386, 2912 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 822, 1067, 1892, 2400, 4477 |
| SpeI | ACTAGT | 1 cut(s) | 2408 |
| SphI | GCATGC | 1 cut(s) | 4381 |
| SsiI | CCGC | 9 cut(s) | 44, 310, 631, 2616, 3535, 3629, 4217, 4219, 4551 |
| SspI | AATATT | 3 cut(s) | 1596, 3806, 4823 |
| StyD4I | CCNGG | 8 cut(s) | 1183, 1644, 1747, 2595, 3727, 4294, 4335, 4853 |
| StyI | CCWWGG | 2 cut(s) | 528, 4769 |
| TaiI | ACGT | 5 cut(s) | 275, 1759, 1846, 3128, 4932 |
| TatI | WGTACW | 9 cut(s) | 1054, 1100, 1633, 2999, 3851, 4158, 4209, 4466, 4684 |
| TauI | GCSGC | 1 cut(s) | 3632 |
| TseFI | GTSAC | 2 cut(s) | 3207, 4176 |
| TseI | GCWGC | 4 cut(s) | 957, 2058, 2829, 4015 |
| Tsp45I | GTSAC | 2 cut(s) | 3207, 4176 |
| TspGWI | ACGGA | 2 cut(s) | 338, 1715 |
| Vha464I | CTTAAG | 1 cut(s) | 4885 |
| VneI | GTGCAC | 1 cut(s) | 3475 |
| VpaK11BI | GGWCC | 5 cut(s) | 325, 407, 1135, 1181, 3664 |
| VspI | ATTAAT | 1 cut(s) | 1488 |
| XbaI | TCTAGA | 1 cut(s) | 1208 |
| XceI | RCATGY | 2 cut(s) | 1557, 4381 |
| XhoI | CTCGAG | 2 cut(s) | 386, 2912 |
| XmiI | GTMKAC | 4 cut(s) | 1431, 2141, 3713, 3995 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1284, 1338, 3509 |
| Zsp2I | ATGCAT | 2 cut(s) | 1692, 2052 |